data_A1B8H # _chem_comp.id A1B8H _chem_comp.name "N-(2,3-dihydro-1H-isoindol-5-yl)-1H-1,3-benzimidazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-11 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B8H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7IA4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B8H N1 N1 N 0 1 N N N N N N -9.187 4.539 -13.248 -0.238 1.199 -0.189 N1 A1B8H 1 A1B8H N3 N2 N 0 1 Y N N N N N -6.702 5.498 -18.515 5.116 -1.355 0.203 N3 A1B8H 2 A1B8H C4 C1 C 0 1 Y N N N N N -9.028 5.750 -9.733 -3.780 1.618 0.700 C4 A1B8H 3 A1B8H C5 C2 C 0 1 Y N N N N N -9.280 4.560 -9.063 -4.292 0.391 0.324 C5 A1B8H 4 A1B8H C6 C3 C 0 1 Y N N N N N -9.527 3.389 -9.765 -3.458 -0.572 -0.222 C6 A1B8H 5 A1B8H C7 C4 C 0 1 Y N N N N N -9.458 3.365 -11.150 -2.115 -0.307 -0.391 C7 A1B8H 6 A1B8H C8 C5 C 0 1 N N N N N N -9.786 2.270 -8.796 -4.289 -1.797 -0.532 C8 A1B8H 7 A1B8H C10 C6 C 0 1 Y N N N N N -8.581 5.048 -15.544 2.112 0.531 -0.103 C10 A1B8H 8 A1B8H C13 C7 C 0 1 Y N N N N N -9.123 4.807 -18.331 4.832 1.135 -0.264 C13 A1B8H 9 A1B8H C15 C8 C 0 1 Y N N N N N -5.798 5.795 -17.571 4.182 -2.322 0.403 C15 A1B8H 10 A1B8H O1 O1 O 0 1 N N N N N N -7.330 5.772 -13.679 0.309 -0.918 0.203 O1 A1B8H 11 A1B8H C1 C9 C 0 1 N N N N N N -8.319 5.164 -14.074 0.674 0.221 -0.019 C1 A1B8H 12 A1B8H C2 C10 C 0 1 Y N N N N N -9.237 4.570 -11.827 -1.598 0.926 -0.013 C2 A1B8H 13 A1B8H C3 C11 C 0 1 Y N N N N N -8.972 5.742 -11.119 -2.437 1.891 0.528 C3 A1B8H 14 A1B8H N2 N3 N 0 1 N N N N N N -9.244 2.832 -7.550 -5.696 -1.336 -0.535 N2 A1B8H 15 A1B8H C9 C12 C 0 1 N N N N N N -9.405 4.295 -7.590 -5.692 -0.177 0.387 C9 A1B8H 16 A1B8H C11 C13 C 0 1 Y N N N N N -9.825 4.668 -16.022 2.536 1.833 -0.357 C11 A1B8H 17 A1B8H C12 C14 C 0 1 Y N N N N N -10.096 4.567 -17.384 3.885 2.126 -0.436 C12 A1B8H 18 A1B8H C14 C15 C 0 1 Y N N N N N -7.868 5.183 -17.864 4.437 -0.171 -0.010 C14 A1B8H 19 A1B8H N4 N4 N 0 1 Y N N N N N -6.249 5.666 -16.345 2.986 -1.811 0.320 N4 A1B8H 20 A1B8H C16 C16 C 0 1 Y N N N N N -7.587 5.311 -16.501 3.071 -0.488 0.074 C16 A1B8H 21 A1B8H H1 H1 H 0 1 N N N N N N -9.886 3.981 -13.695 0.050 2.094 -0.429 H1 A1B8H 22 A1B8H H13 H2 H 0 1 N N N N N N -6.555 5.505 -19.504 6.078 -1.473 0.213 H13 A1B8H 23 A1B8H H3 H3 H 0 1 N N N N N N -8.878 6.668 -9.183 -4.432 2.366 1.125 H3 A1B8H 24 A1B8H H4 H4 H 0 1 N N N N N N -9.572 2.439 -11.693 -1.465 -1.057 -0.816 H4 A1B8H 25 A1B8H H5 H5 H 0 1 N N N N N N -10.861 2.056 -8.706 -4.021 -2.195 -1.511 H5 A1B8H 26 A1B8H H6 H6 H 0 1 N N N N N N -9.253 1.353 -9.089 -4.143 -2.555 0.237 H6 A1B8H 27 A1B8H H12 H7 H 0 1 N N N N N N -9.326 4.708 -19.387 5.882 1.377 -0.328 H12 A1B8H 28 A1B8H H14 H8 H 0 1 N N N N N N -4.791 6.111 -17.798 4.399 -3.361 0.600 H14 A1B8H 29 A1B8H H2 H9 H 0 1 N N N N N N -8.722 6.647 -11.652 -2.041 2.854 0.813 H2 A1B8H 30 A1B8H H7 H10 H 0 1 N N N N N N -9.742 2.459 -6.767 -5.984 -1.060 -1.462 H7 A1B8H 31 A1B8H H8 H12 H 0 1 N N N N N N -10.389 4.603 -7.207 -5.922 -0.502 1.401 H8 A1B8H 32 A1B8H H9 H13 H 0 1 N N N N N N -8.614 4.804 -7.020 -6.416 0.568 0.057 H9 A1B8H 33 A1B8H H10 H14 H 0 1 N N N N N N -10.610 4.443 -15.315 1.807 2.618 -0.494 H10 A1B8H 34 A1B8H H11 H15 H 0 1 N N N N N N -11.090 4.295 -17.706 4.202 3.139 -0.634 H11 A1B8H 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B8H O1 C1 DOUB N N 1 A1B8H C1 N1 SING N N 2 A1B8H N1 C2 SING N N 3 A1B8H C2 C3 DOUB Y N 4 A1B8H C3 C4 SING Y N 5 A1B8H C4 C5 DOUB Y N 6 A1B8H C5 C6 SING Y N 7 A1B8H C6 C7 DOUB Y N 8 A1B8H C6 C8 SING N N 9 A1B8H C8 N2 SING N N 10 A1B8H N2 C9 SING N N 11 A1B8H C1 C10 SING N N 12 A1B8H C10 C11 DOUB Y N 13 A1B8H C11 C12 SING Y N 14 A1B8H C12 C13 DOUB Y N 15 A1B8H C13 C14 SING Y N 16 A1B8H C14 N3 SING Y N 17 A1B8H N3 C15 SING Y N 18 A1B8H C15 N4 DOUB Y N 19 A1B8H N4 C16 SING Y N 20 A1B8H C2 C7 SING Y N 21 A1B8H C10 C16 SING Y N 22 A1B8H C5 C9 SING N N 23 A1B8H C14 C16 DOUB Y N 24 A1B8H N1 H1 SING N N 25 A1B8H N3 H13 SING N N 26 A1B8H C4 H3 SING N N 27 A1B8H C7 H4 SING N N 28 A1B8H C8 H5 SING N N 29 A1B8H C8 H6 SING N N 30 A1B8H C13 H12 SING N N 31 A1B8H C15 H14 SING N N 32 A1B8H C3 H2 SING N N 33 A1B8H N2 H7 SING N N 34 A1B8H C9 H8 SING N N 35 A1B8H C9 H9 SING N N 36 A1B8H C11 H10 SING N N 37 A1B8H C12 H11 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B8H SMILES ACDLabs 14.52 "O=C(Nc1ccc2CNCc2c1)c1cccc2[NH]cnc21" A1B8H InChI InChI 1.06 "InChI=1S/C16H14N4O/c21-16(13-2-1-3-14-15(13)19-9-18-14)20-12-5-4-10-7-17-8-11(10)6-12/h1-6,9,17H,7-8H2,(H,18,19)(H,20,21)" A1B8H InChIKey InChI 1.06 CACCFMCUTIQAGX-UHFFFAOYSA-N A1B8H SMILES_CANONICAL CACTVS 3.385 "O=C(Nc1ccc2CNCc2c1)c3cccc4[nH]cnc34" A1B8H SMILES CACTVS 3.385 "O=C(Nc1ccc2CNCc2c1)c3cccc4[nH]cnc34" A1B8H SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)[nH]cn2)C(=O)Nc3ccc4c(c3)CNC4" A1B8H SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)[nH]cn2)C(=O)Nc3ccc4c(c3)CNC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B8H "SYSTEMATIC NAME" ACDLabs 14.52 "N-(2,3-dihydro-1H-isoindol-5-yl)-1H-1,3-benzimidazole-4-carboxamide" A1B8H "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(2,3-dihydro-1~{H}-isoindol-5-yl)-1~{H}-benzimidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B8H "Create component" 2025-04-11 RCSB A1B8H "Initial release" 2025-04-23 RCSB #