data_A1B93 # _chem_comp.id A1B93 _chem_comp.name "(2S,3R,4R)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N3 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Ertapenem, bound form, post-isomerized, delta-1(R) isomer" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-16 _chem_comp.pdbx_modified_date 2025-12-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.531 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B93 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MTW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B93 C2 C1 C 0 1 N N R N N N 8.145 28.684 10.467 -2.856 -0.379 -0.820 C2 A1B93 1 A1B93 C5 C2 C 0 1 N N S N N N 6.456 28.825 12.218 -5.093 0.419 -0.606 C5 A1B93 2 A1B93 C6 C3 C 0 1 N N S N N N 6.225 27.589 13.065 -5.929 1.207 0.405 C6 A1B93 3 A1B93 C1 C4 C 0 1 N N R N N N 7.932 29.082 11.912 -3.638 0.942 -0.622 C1 A1B93 4 A1B93 C11 C5 C 0 1 N N N N N N 8.900 28.358 12.839 -3.274 1.605 0.708 C11 A1B93 5 A1B93 C3 C6 C 0 1 N N N N N N 6.764 28.483 9.972 -3.803 -1.439 -0.302 C3 A1B93 6 A1B93 C7 C7 C 0 1 N N N N N N 5.033 26.704 12.463 -5.456 0.894 1.801 C7 A1B93 7 A1B93 CD2 C8 C 0 1 Y N N N N N 11.211 25.003 13.603 5.447 1.322 0.376 CD2 A1B93 8 A1B93 CE2 C9 C 0 1 Y N N N N N 9.906 24.952 14.061 6.436 2.249 0.685 CE2 A1B93 9 A1B93 CE3 C10 C 0 1 Y N N N N N 12.258 24.751 14.481 5.767 -0.022 0.264 CE3 A1B93 10 A1B93 CZ2 C11 C 0 1 Y N N N N N 9.644 24.657 15.388 7.740 1.835 0.882 CZ2 A1B93 11 A1B93 CZ3 C12 C 0 1 Y N N N N N 11.993 24.459 15.808 7.083 -0.440 0.464 CZ3 A1B93 12 A1B93 CH2 C13 C 0 1 Y N N N N N 10.686 24.407 16.263 8.070 0.500 0.773 CH2 A1B93 13 A1B93 C1A C14 C 0 1 N N S N N N 10.147 27.166 9.226 -0.311 0.875 -0.710 C1A A1B93 14 A1B93 C2A C15 C 0 1 N N N N N N 10.563 25.786 8.787 0.261 0.305 -2.032 C2A A1B93 15 A1B93 C31 C16 C 0 1 N N N N N N 6.487 28.204 8.566 -3.403 -2.825 0.039 C31 A1B93 16 A1B93 C41 C17 C 0 1 N N N N N N 13.110 24.184 16.761 7.433 -1.870 0.347 C41 A1B93 17 A1B93 C4A C18 C 0 1 N N N N N N 11.361 27.756 9.904 0.985 1.183 0.085 C4A A1B93 18 A1B93 C5A C19 C 0 1 N N S N N N 12.157 26.563 10.400 1.964 1.650 -1.013 C5A A1B93 19 A1B93 C61 C20 C 0 1 N N R N N N 5.788 27.987 14.473 -7.401 0.814 0.265 C61 A1B93 20 A1B93 C62 C21 C 0 1 N N N N N N 5.652 26.746 15.355 -7.882 1.131 -1.152 C62 A1B93 21 A1B93 C6A C22 C 0 1 N N N N N N 11.976 26.433 11.882 3.346 1.125 -0.724 C6A A1B93 22 A1B93 N3A N1 N 0 1 N N N N N N 11.642 25.371 9.700 1.477 1.104 -2.293 N3A A1B93 23 A1B93 N4 N2 N 0 1 N N N N N N 5.905 28.549 10.885 -4.989 -0.986 -0.196 N4 A1B93 24 A1B93 N7A N3 N 0 1 N N N N N N 11.445 25.286 12.308 4.127 1.745 0.183 N7A A1B93 25 A1B93 O31 O1 O 0 1 N N N N N N 5.673 27.314 8.264 -4.296 -3.666 0.596 O31 A1B93 26 A1B93 O32 O2 O 0 1 N N N N N N 7.103 28.859 7.700 -2.271 -3.202 -0.183 O32 A1B93 27 A1B93 O42 O3 O 0 1 N N N N N N 12.824 23.815 17.917 8.705 -2.271 0.540 O42 A1B93 28 A1B93 O43 O4 O 0 1 N N N N N N 14.288 24.330 16.376 6.574 -2.685 0.078 O43 A1B93 29 A1B93 O62 O5 O 0 1 N N N N N N 6.671 28.951 15.061 -7.546 -0.586 0.515 O62 A1B93 30 A1B93 O6A O6 O 0 1 N N N N N N 12.309 27.358 12.603 3.756 0.143 -1.306 O6A A1B93 31 A1B93 O7 O7 O 0 1 N N N N N N 5.482 25.754 11.820 -5.038 1.778 2.509 O7 A1B93 32 A1B93 S21 S1 S 0 1 N N N N N N 8.851 27.076 10.402 -1.322 -0.363 0.148 S21 A1B93 33 A1B93 H1 H1 H 0 1 N N N N N N 8.746 29.398 9.885 -2.640 -0.542 -1.875 H1 A1B93 34 A1B93 H2 H2 H 0 1 N N N N N N 5.991 29.710 12.676 -5.533 0.494 -1.600 H2 A1B93 35 A1B93 H3 H3 H 0 1 N N N N N N 7.140 26.980 13.110 -5.819 2.274 0.215 H3 A1B93 36 A1B93 H4 H4 H 0 1 N N N N N N 8.116 30.163 12.002 -3.474 1.624 -1.457 H4 A1B93 37 A1B93 H5 H5 H 0 1 N N N N N N 8.717 28.671 13.878 -2.248 1.969 0.664 H5 A1B93 38 A1B93 H6 H6 H 0 1 N N N N N N 8.749 27.272 12.751 -3.948 2.441 0.894 H6 A1B93 39 A1B93 H7 H7 H 0 1 N N N N N N 9.934 28.608 12.558 -3.367 0.877 1.514 H7 A1B93 40 A1B93 H8 H8 H 0 1 N Y N N N N 3.982 26.911 12.602 -5.491 -0.121 2.168 H8 A1B93 41 A1B93 H10 H10 H 0 1 N N N N N N 9.089 25.143 13.381 6.184 3.295 0.771 H10 A1B93 42 A1B93 H11 H11 H 0 1 N N N N N N 13.278 24.783 14.128 5.000 -0.743 0.025 H11 A1B93 43 A1B93 H12 H12 H 0 1 N N N N N N 8.624 24.622 15.741 8.504 2.560 1.122 H12 A1B93 44 A1B93 H13 H13 H 0 1 N N N N N N 10.481 24.172 17.297 9.090 0.181 0.927 H13 A1B93 45 A1B93 H14 H14 H 0 1 N N N N N N 9.812 27.782 8.379 -0.883 1.785 -0.892 H14 A1B93 46 A1B93 H15 H15 H 0 1 N N N N N N 9.714 25.091 8.860 0.517 -0.748 -1.912 H15 A1B93 47 A1B93 H16 H16 H 0 1 N N N N N N 10.929 25.810 7.750 -0.457 0.431 -2.842 H16 A1B93 48 A1B93 H17 H17 H 0 1 N N N N N N 11.954 28.345 9.189 0.812 1.978 0.811 H17 A1B93 49 A1B93 H18 H18 H 0 1 N N N N N N 11.060 28.396 10.746 1.357 0.285 0.577 H18 A1B93 50 A1B93 H19 H19 H 0 1 N N N N N N 13.222 26.708 10.166 1.982 2.739 -1.054 H19 A1B93 51 A1B93 H20 H20 H 0 1 N N N N N N 4.788 28.438 14.389 -7.997 1.375 0.985 H20 A1B93 52 A1B93 H21 H21 H 0 1 N N N N N N 5.337 27.046 16.365 -7.286 0.570 -1.872 H21 A1B93 53 A1B93 H22 H22 H 0 1 N N N N N N 4.900 26.070 14.923 -8.931 0.851 -1.251 H22 A1B93 54 A1B93 H23 H23 H 0 1 N N N N N N 6.621 26.229 15.412 -7.772 2.199 -1.342 H23 A1B93 55 A1B93 H24 H24 H 0 1 N N N N N N 11.285 24.717 10.367 2.188 0.545 -2.741 H24 A1B93 56 A1B93 H26 H26 H 0 1 N N N N N N 11.207 24.596 11.625 3.774 2.486 0.701 H26 A1B93 57 A1B93 H27 H27 H 0 1 N N N N N N 5.620 27.240 7.318 -3.989 -4.560 0.801 H27 A1B93 58 A1B93 H28 H28 H 0 1 N N N N N N 13.623 23.677 18.412 8.885 -3.217 0.454 H28 A1B93 59 A1B93 H29 H29 H 0 1 N N N N N N 6.365 29.171 15.933 -8.456 -0.906 0.444 H29 A1B93 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B93 O32 C31 DOUB N N 1 A1B93 O31 C31 SING N N 2 A1B93 C31 C3 SING N N 3 A1B93 C2A C1A SING N N 4 A1B93 C2A N3A SING N N 5 A1B93 C1A C4A SING N N 6 A1B93 C1A S21 SING N N 7 A1B93 N3A C5A SING N N 8 A1B93 C4A C5A SING N N 9 A1B93 C3 C2 SING N N 10 A1B93 C3 N4 DOUB N N 11 A1B93 C5A C6A SING N N 12 A1B93 S21 C2 SING N N 13 A1B93 C2 C1 SING N N 14 A1B93 N4 C5 SING N N 15 A1B93 O7 C7 DOUB N N 16 A1B93 C6A N7A SING N N 17 A1B93 C6A O6A DOUB N N 18 A1B93 C1 C5 SING N N 19 A1B93 C1 C11 SING N N 20 A1B93 C5 C6 SING N N 21 A1B93 N7A CD2 SING N N 22 A1B93 C7 C6 SING N N 23 A1B93 C6 C61 SING N N 24 A1B93 CD2 CE2 DOUB Y N 25 A1B93 CD2 CE3 SING Y N 26 A1B93 CE2 CZ2 SING Y N 27 A1B93 C61 O62 SING N N 28 A1B93 C61 C62 SING N N 29 A1B93 CE3 CZ3 DOUB Y N 30 A1B93 CZ2 CH2 DOUB Y N 31 A1B93 CZ3 CH2 SING Y N 32 A1B93 CZ3 C41 SING N N 33 A1B93 O43 C41 DOUB N N 34 A1B93 C41 O42 SING N N 35 A1B93 C2 H1 SING N N 36 A1B93 C5 H2 SING N N 37 A1B93 C6 H3 SING N N 38 A1B93 C1 H4 SING N N 39 A1B93 C11 H5 SING N N 40 A1B93 C11 H6 SING N N 41 A1B93 C11 H7 SING N N 42 A1B93 C7 H8 SING N N 43 A1B93 CE2 H10 SING N N 44 A1B93 CE3 H11 SING N N 45 A1B93 CZ2 H12 SING N N 46 A1B93 CH2 H13 SING N N 47 A1B93 C1A H14 SING N N 48 A1B93 C2A H15 SING N N 49 A1B93 C2A H16 SING N N 50 A1B93 C4A H17 SING N N 51 A1B93 C4A H18 SING N N 52 A1B93 C5A H19 SING N N 53 A1B93 C61 H20 SING N N 54 A1B93 C62 H21 SING N N 55 A1B93 C62 H22 SING N N 56 A1B93 C62 H23 SING N N 57 A1B93 N3A H24 SING N N 58 A1B93 N7A H26 SING N N 59 A1B93 O31 H27 SING N N 60 A1B93 O42 H28 SING N N 61 A1B93 O62 H29 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B93 SMILES ACDLabs 14.52 "O=C(O)c1cc(ccc1)NC(=O)C1CC(SC2C(C)C(N=C2C(=O)O)C(C=O)C(C)O)CN1" A1B93 InChI InChI 1.06 "InChI=1S/C22H27N3O7S/c1-10-17(15(9-26)11(2)27)25-18(22(31)32)19(10)33-14-7-16(23-8-14)20(28)24-13-5-3-4-12(6-13)21(29)30/h3-6,9-11,14-17,19,23,27H,7-8H2,1-2H3,(H,24,28)(H,29,30)(H,31,32)/t10-,11-,14+,15-,16+,17-,19-/m1/s1" A1B93 InChIKey InChI 1.06 RALHTEQYPKBGFO-RNGRAGBPSA-N A1B93 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C=O)[C@@H]1N=C([C@H](S[C@@H]2CN[C@@H](C2)C(=O)Nc3cccc(c3)C(O)=O)[C@@H]1C)C(O)=O" A1B93 SMILES CACTVS 3.385 "C[CH](O)[CH](C=O)[CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)Nc3cccc(c3)C(O)=O)[CH]1C)C(O)=O" A1B93 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1[C@H](C(=N[C@H]1[C@H](C=O)[C@@H](C)O)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)Nc3cccc(c3)C(=O)O" A1B93 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1C(C(=NC1C(C=O)C(C)O)C(=O)O)SC2CC(NC2)C(=O)Nc3cccc(c3)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B93 "SYSTEMATIC NAME" ACDLabs 14.52 "(2S,3R,4R)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" A1B93 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S},3~{R},4~{R})-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1B93 "ertapenem, bound form, post-isomerized, delta-1(R) isomer" AUTHOR ? 2 A1B93 "(2S,3R,4R)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" PDB IUPAC # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1B93 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B93 "Create component" 2025-04-16 RCSB A1B93 "Modify PCM" 2025-04-17 RCSB A1B93 "Initial release" 2025-04-23 RCSB A1B93 "Modify name" 2025-12-15 PDBE A1B93 "Modify name" 2025-12-17 RCSB #