data_A1B9J # _chem_comp.id A1B9J _chem_comp.name "N-(2,3-dihydro-1H-isoindol-5-yl)-2-oxo-2,3-dihydro-1H-1,3-benzimidazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-11 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B9J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7IAE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B9J N1 N1 N 0 1 N N N N N N -9.078 4.085 -13.221 -0.573 1.362 -0.152 N1 A1B9J 1 A1B9J N3 N2 N 0 1 N N N N N N -6.493 5.135 -18.389 4.953 -0.833 0.077 N3 A1B9J 2 A1B9J C4 C1 C 0 1 Y N N N N N -8.714 5.286 -9.743 -4.126 1.486 0.783 C4 A1B9J 3 A1B9J C5 C2 C 0 1 Y N N N N N -9.111 4.155 -9.041 -4.555 0.244 0.352 C5 A1B9J 4 A1B9J C6 C3 C 0 1 Y N N N N N -9.542 3.019 -9.712 -3.661 -0.630 -0.245 C6 A1B9J 5 A1B9J C7 C4 C 0 1 Y N N N N N -9.541 2.970 -11.099 -2.341 -0.262 -0.412 C7 A1B9J 6 A1B9J C8 C5 C 0 1 N N N N N N -9.984 1.987 -8.716 -4.406 -1.895 -0.608 C8 A1B9J 7 A1B9J C10 C6 C 0 1 Y N N N N N -8.561 4.679 -15.515 1.820 0.859 -0.117 C10 A1B9J 8 A1B9J C13 C7 C 0 1 Y N N N N N -8.905 4.359 -18.322 4.483 1.652 -0.269 C13 A1B9J 9 A1B9J C15 C8 C 0 1 N N N N N N -5.588 5.450 -17.412 4.126 -1.884 0.238 C15 A1B9J 10 A1B9J O1 O1 O 0 1 N N N N N N -7.412 5.573 -13.663 0.126 -0.727 0.133 O1 A1B9J 11 A1B9J C1 C9 C 0 1 N N N N N N -8.317 4.836 -14.049 0.407 0.444 -0.037 C1 A1B9J 12 A1B9J C2 C10 C 0 1 Y N N N N N -9.111 4.103 -11.802 -1.908 0.985 0.020 C2 A1B9J 13 A1B9J C3 C11 C 0 1 Y N N N N N -8.673 5.238 -11.125 -2.808 1.861 0.614 C3 A1B9J 14 A1B9J N2 N3 N 0 1 N N N N N N -9.413 2.507 -7.465 -5.842 -1.535 -0.577 N2 A1B9J 15 A1B9J C9 C12 C 0 1 N N N N N N -9.278 3.964 -7.559 -5.910 -0.424 0.398 C9 A1B9J 16 A1B9J C11 C13 C 0 1 Y N N N N N -9.760 4.238 -16.064 2.148 2.202 -0.312 C11 A1B9J 17 A1B9J C12 C14 C 0 1 Y N N N N N -9.934 4.117 -17.439 3.471 2.588 -0.386 C12 A1B9J 18 A1B9J C14 C15 C 0 1 Y N N N N N -7.698 4.789 -17.794 4.176 0.314 -0.074 C14 A1B9J 19 A1B9J O2 O2 O 0 1 N N N N N N -4.400 5.746 -17.576 4.481 -3.036 0.400 O2 A1B9J 20 A1B9J N4 N4 N 0 1 N N N N N N -6.213 5.324 -16.208 2.848 -1.464 0.191 N4 A1B9J 21 A1B9J C16 C16 C 0 1 Y N N N N N -7.516 4.937 -16.411 2.842 -0.091 0.003 C16 A1B9J 22 A1B9J H1 H1 H 0 1 N N N N N N -9.695 3.435 -13.664 -0.351 2.285 -0.351 H1 A1B9J 23 A1B9J H13 H2 H 0 1 N N N N N N -6.315 5.151 -19.373 5.922 -0.867 0.072 H13 A1B9J 24 A1B9J H3 H3 H 0 1 N N N N N N -8.441 6.189 -9.218 -4.825 2.165 1.248 H3 A1B9J 25 A1B9J H4 H4 H 0 1 N N N N N N -9.863 2.082 -11.623 -1.645 -0.944 -0.878 H4 A1B9J 26 A1B9J H5 H5 H 0 1 N N N N N N -11.081 1.929 -8.661 -4.122 -2.226 -1.606 H5 A1B9J 27 A1B9J H6 H6 H 0 1 N N N N N N -9.576 0.995 -8.960 -4.199 -2.676 0.123 H6 A1B9J 28 A1B9J H12 H7 H 0 1 N N N N N N -9.034 4.219 -19.385 5.515 1.964 -0.328 H12 A1B9J 29 A1B9J H2 H8 H 0 1 N N N N N N -8.299 6.085 -11.681 -2.477 2.835 0.942 H2 A1B9J 30 A1B9J H7 H9 H 0 1 N N N N N N -10.017 2.277 -6.702 -6.160 -1.237 -1.488 H7 A1B9J 31 A1B9J H8 H11 H 0 1 N N N N N N -10.178 4.476 -7.187 -6.105 -0.812 1.398 H8 A1B9J 32 A1B9J H9 H12 H 0 1 N N N N N N -8.397 4.322 -7.006 -6.688 0.283 0.110 H9 A1B9J 33 A1B9J H10 H13 H 0 1 N N N N N N -10.577 3.983 -15.406 1.366 2.941 -0.405 H10 A1B9J 34 A1B9J H11 H14 H 0 1 N N N N N N -10.900 3.826 -17.824 3.718 3.628 -0.537 H11 A1B9J 35 A1B9J H14 H15 H 0 1 N N N N N N -5.790 5.487 -15.317 2.063 -2.027 0.281 H14 A1B9J 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B9J O1 C1 DOUB N N 1 A1B9J C1 N1 SING N N 2 A1B9J N1 C2 SING N N 3 A1B9J C2 C3 DOUB Y N 4 A1B9J C3 C4 SING Y N 5 A1B9J C4 C5 DOUB Y N 6 A1B9J C5 C6 SING Y N 7 A1B9J C6 C7 DOUB Y N 8 A1B9J C6 C8 SING N N 9 A1B9J C8 N2 SING N N 10 A1B9J N2 C9 SING N N 11 A1B9J C1 C10 SING N N 12 A1B9J C10 C11 DOUB Y N 13 A1B9J C11 C12 SING Y N 14 A1B9J C12 C13 DOUB Y N 15 A1B9J C13 C14 SING Y N 16 A1B9J C14 N3 SING N N 17 A1B9J N3 C15 SING N N 18 A1B9J C15 O2 DOUB N N 19 A1B9J C15 N4 SING N N 20 A1B9J N4 C16 SING N N 21 A1B9J C2 C7 SING Y N 22 A1B9J C10 C16 SING Y N 23 A1B9J C5 C9 SING N N 24 A1B9J C14 C16 DOUB Y N 25 A1B9J N1 H1 SING N N 26 A1B9J N3 H13 SING N N 27 A1B9J C4 H3 SING N N 28 A1B9J C7 H4 SING N N 29 A1B9J C8 H5 SING N N 30 A1B9J C8 H6 SING N N 31 A1B9J C13 H12 SING N N 32 A1B9J C3 H2 SING N N 33 A1B9J N2 H7 SING N N 34 A1B9J C9 H8 SING N N 35 A1B9J C9 H9 SING N N 36 A1B9J C11 H10 SING N N 37 A1B9J C12 H11 SING N N 38 A1B9J N4 H14 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B9J SMILES ACDLabs 14.52 "O=C1Nc2cccc(c2N1)C(=O)Nc1ccc2CNCc2c1" A1B9J InChI InChI 1.06 "InChI=1S/C16H14N4O2/c21-15(12-2-1-3-13-14(12)20-16(22)19-13)18-11-5-4-9-7-17-8-10(9)6-11/h1-6,17H,7-8H2,(H,18,21)(H2,19,20,22)" A1B9J InChIKey InChI 1.06 HEIBORWUUKURSH-UHFFFAOYSA-N A1B9J SMILES_CANONICAL CACTVS 3.385 "O=C1Nc2cccc(C(=O)Nc3ccc4CNCc4c3)c2N1" A1B9J SMILES CACTVS 3.385 "O=C1Nc2cccc(C(=O)Nc3ccc4CNCc4c3)c2N1" A1B9J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)NC(=O)N2)C(=O)Nc3ccc4c(c3)CNC4" A1B9J SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)NC(=O)N2)C(=O)Nc3ccc4c(c3)CNC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B9J "SYSTEMATIC NAME" ACDLabs 14.52 "N-(2,3-dihydro-1H-isoindol-5-yl)-2-oxo-2,3-dihydro-1H-1,3-benzimidazole-4-carboxamide" A1B9J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-(2,3-dihydro-1~{H}-isoindol-5-yl)-2-oxidanylidene-1,3-dihydrobenzimidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B9J "Create component" 2025-04-11 RCSB A1B9J "Initial release" 2025-04-23 RCSB #