data_A1B9O # _chem_comp.id A1B9O _chem_comp.name "N-[3-(aminomethyl)phenyl]-2-(propan-2-yl)-1H-1,3-benzimidazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-11 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B9O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I9O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B9O N1 N1 N 0 1 N N N N N N -9.012 4.959 -13.750 1.586 0.778 -0.272 N1 A1B9O 1 A1B9O N3 N2 N 0 1 Y N N N N N -6.865 5.647 -19.258 -4.346 0.582 0.058 N3 A1B9O 2 A1B9O C4 C1 C 0 1 Y N N N N N -7.564 5.528 -17.157 -2.125 0.555 -0.066 C4 A1B9O 3 A1B9O C5 C2 C 0 1 Y N N N N N -8.450 5.257 -16.101 -0.831 1.114 -0.135 C5 A1B9O 4 A1B9O C6 C3 C 0 1 N N N N N N -8.121 5.460 -14.647 0.353 0.239 -0.206 C6 A1B9O 5 A1B9O C7 C4 C 0 1 Y N N N N N -8.956 5.050 -12.332 2.713 -0.049 -0.248 C7 A1B9O 6 A1B9O C8 C5 C 0 1 Y N N N N N -8.548 6.232 -11.724 2.675 -1.296 -0.860 C8 A1B9O 7 A1B9O C10 C6 C 0 1 Y N N N N N -8.906 5.242 -9.564 4.944 -1.686 -0.200 C10 A1B9O 8 A1B9O C13 C7 C 0 1 Y N N N N N -9.342 3.972 -11.542 3.875 0.376 0.383 C13 A1B9O 9 A1B9O C15 C8 C 0 1 Y N N N N N -10.077 4.524 -17.765 -1.792 3.320 -0.070 C15 A1B9O 10 A1B9O C17 C9 C 0 1 Y N N N N N -7.946 5.276 -18.476 -3.240 1.408 0.001 C17 A1B9O 11 A1B9O O O1 O 0 1 N N N N N N -7.099 6.055 -14.311 0.217 -0.970 -0.206 O A1B9O 12 A1B9O C11 C10 C 0 1 Y N N N N N -9.337 4.064 -10.152 4.987 -0.444 0.405 C11 A1B9O 13 A1B9O C12 C11 C 0 1 N N N N N N -9.871 2.950 -9.309 6.246 0.015 1.095 C12 A1B9O 14 A1B9O N2 N3 N 0 1 N N N N N N -8.771 2.375 -8.546 7.099 0.726 0.134 N2 A1B9O 15 A1B9O C9 C12 C 0 1 Y N N N N N -8.521 6.320 -10.342 3.790 -2.110 -0.834 C9 A1B9O 16 A1B9O C14 C13 C 0 1 Y N N N N N -9.707 4.756 -16.444 -0.682 2.499 -0.136 C14 A1B9O 17 A1B9O C16 C14 C 0 1 Y N N N N N -9.197 4.772 -18.806 -3.063 2.784 -0.002 C16 A1B9O 18 A1B9O N N4 N 0 1 Y N N N N N -6.273 6.050 -17.146 -2.591 -0.709 -0.037 N A1B9O 19 A1B9O C3 C15 C 0 1 Y N N N N N -5.907 6.094 -18.410 -3.892 -0.698 0.032 C3 A1B9O 20 A1B9O C1 C16 C 0 1 N N N N N N -4.538 6.564 -18.815 -4.764 -1.926 0.084 C1 A1B9O 21 A1B9O C2 C17 C 0 1 N N N N N N -4.515 7.135 -20.215 -5.085 -2.263 1.542 C2 A1B9O 22 A1B9O C C18 C 0 1 N N N N N N -3.499 5.476 -18.626 -6.065 -1.659 -0.676 C A1B9O 23 A1B9O H8 H1 H 0 1 N N N N N N -9.797 4.470 -14.131 1.692 1.740 -0.340 H8 A1B9O 24 A1B9O H H2 H 0 1 N N N N N N -6.803 5.595 -20.255 -5.273 0.863 0.112 H A1B9O 25 A1B9O H9 H3 H 0 1 N N N N N N -8.253 7.078 -12.327 1.774 -1.628 -1.355 H9 A1B9O 26 A1B9O H11 H4 H 0 1 N N N N N N -8.870 5.320 -8.487 5.814 -2.325 -0.182 H11 A1B9O 27 A1B9O H16 H5 H 0 1 N N N N N N -9.650 3.050 -12.013 3.909 1.346 0.856 H16 A1B9O 28 A1B9O H18 H6 H 0 1 N N N N N N -11.065 4.145 -17.982 -1.664 4.393 -0.071 H18 A1B9O 29 A1B9O H13 H7 H 0 1 N N N N N N -10.635 3.340 -8.621 5.988 0.683 1.916 H13 A1B9O 30 A1B9O H12 H8 H 0 1 N N N N N N -10.318 2.179 -9.954 6.781 -0.851 1.486 H12 A1B9O 31 A1B9O H20 H9 H 0 1 N N N N N N -9.114 1.628 -7.977 7.951 1.043 0.572 H20 A1B9O 32 A1B9O H15 H10 H 0 1 N N N N N N -8.077 2.024 -9.175 7.300 0.148 -0.669 H15 A1B9O 33 A1B9O H10 H12 H 0 1 N N N N N N -8.198 7.235 -9.869 3.761 -3.079 -1.310 H10 A1B9O 34 A1B9O H17 H13 H 0 1 N N N N N N -10.416 4.541 -15.658 0.305 2.933 -0.188 H17 A1B9O 35 A1B9O H19 H14 H 0 1 N N N N N N -9.473 4.581 -19.833 -3.921 3.437 0.049 H19 A1B9O 36 A1B9O H4 H16 H 0 1 N N N N N N -4.267 7.383 -18.133 -4.240 -2.764 -0.376 H4 A1B9O 37 A1B9O H6 H17 H 0 1 N N N N N N -5.283 7.918 -20.305 -5.609 -1.425 2.001 H6 A1B9O 38 A1B9O H5 H18 H 0 1 N N N N N N -3.524 7.568 -20.418 -5.716 -3.151 1.579 H5 A1B9O 39 A1B9O H7 H19 H 0 1 N N N N N N -4.721 6.334 -20.941 -4.158 -2.453 2.083 H7 A1B9O 40 A1B9O H3 H20 H 0 1 N N N N N N -3.553 5.092 -17.597 -5.837 -1.419 -1.714 H3 A1B9O 41 A1B9O H1 H21 H 0 1 N N N N N N -3.693 4.657 -19.334 -6.696 -2.547 -0.638 H1 A1B9O 42 A1B9O H2 H22 H 0 1 N N N N N N -2.497 5.890 -18.811 -6.589 -0.821 -0.216 H2 A1B9O 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B9O C C1 SING N N 1 A1B9O C2 C1 SING N N 2 A1B9O C1 C3 SING N N 3 A1B9O C3 N DOUB Y N 4 A1B9O N C4 SING Y N 5 A1B9O C4 C5 DOUB Y N 6 A1B9O C5 C6 SING N N 7 A1B9O C6 O DOUB N N 8 A1B9O N1 C6 SING N N 9 A1B9O C7 N1 SING N N 10 A1B9O C7 C8 SING Y N 11 A1B9O C8 C9 DOUB Y N 12 A1B9O C9 C10 SING Y N 13 A1B9O C10 C11 DOUB Y N 14 A1B9O C12 C11 SING N N 15 A1B9O N2 C12 SING N N 16 A1B9O C11 C13 SING Y N 17 A1B9O C13 C7 DOUB Y N 18 A1B9O C14 C5 SING Y N 19 A1B9O C15 C14 DOUB Y N 20 A1B9O C16 C15 SING Y N 21 A1B9O C17 C16 DOUB Y N 22 A1B9O C4 C17 SING Y N 23 A1B9O N3 C17 SING Y N 24 A1B9O C3 N3 SING Y N 25 A1B9O N1 H8 SING N N 26 A1B9O N3 H SING N N 27 A1B9O C8 H9 SING N N 28 A1B9O C10 H11 SING N N 29 A1B9O C13 H16 SING N N 30 A1B9O C15 H18 SING N N 31 A1B9O C12 H13 SING N N 32 A1B9O C12 H12 SING N N 33 A1B9O N2 H20 SING N N 34 A1B9O N2 H15 SING N N 35 A1B9O C9 H10 SING N N 36 A1B9O C14 H17 SING N N 37 A1B9O C16 H19 SING N N 38 A1B9O C1 H4 SING N N 39 A1B9O C2 H6 SING N N 40 A1B9O C2 H5 SING N N 41 A1B9O C2 H7 SING N N 42 A1B9O C H3 SING N N 43 A1B9O C H1 SING N N 44 A1B9O C H2 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B9O SMILES ACDLabs 14.52 "NCc1cc(ccc1)NC(=O)c1cccc2[NH]c(nc12)C(C)C" A1B9O InChI InChI 1.06 "InChI=1S/C18H20N4O/c1-11(2)17-21-15-8-4-7-14(16(15)22-17)18(23)20-13-6-3-5-12(9-13)10-19/h3-9,11H,10,19H2,1-2H3,(H,20,23)(H,21,22)" A1B9O InChIKey InChI 1.06 YESKCYOWTDUTOG-UHFFFAOYSA-N A1B9O SMILES_CANONICAL CACTVS 3.385 "CC(C)c1[nH]c2cccc(C(=O)Nc3cccc(CN)c3)c2n1" A1B9O SMILES CACTVS 3.385 "CC(C)c1[nH]c2cccc(C(=O)Nc3cccc(CN)c3)c2n1" A1B9O SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)c1[nH]c2cccc(c2n1)C(=O)Nc3cccc(c3)CN" A1B9O SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)c1[nH]c2cccc(c2n1)C(=O)Nc3cccc(c3)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B9O "SYSTEMATIC NAME" ACDLabs 14.52 "N-[3-(aminomethyl)phenyl]-2-(propan-2-yl)-1H-1,3-benzimidazole-4-carboxamide" A1B9O "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[3-(aminomethyl)phenyl]-2-propan-2-yl-1~{H}-benzimidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B9O "Create component" 2025-04-11 RCSB A1B9O "Initial release" 2025-04-23 RCSB #