data_A1B9V # _chem_comp.id A1B9V _chem_comp.name "3-[(1S,3S)-1-oxo-2,3-dihydro-1H-1lambda~4~-benzothiophen-3-yl]-L-alanine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H13 N O3 S" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-14 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 239.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1B9V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9O6A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1B9V N N1 N 0 1 N N N Y Y N 109.332 144.286 146.430 2.707 1.277 1.453 N A1B9V 1 A1B9V CA C1 C 0 1 N N S N Y N 110.484 144.469 147.263 2.409 0.188 0.513 CA A1B9V 2 A1B9V C C2 C 0 1 N N N N Y Y 110.866 143.153 147.985 3.472 0.141 -0.554 C A1B9V 3 A1B9V O O1 O 0 1 N N N N Y Y 112.010 142.801 148.032 4.163 1.110 -0.762 O A1B9V 4 A1B9V CB C3 C 0 1 N N N N N N 110.255 145.581 148.303 1.045 0.433 -0.135 CB A1B9V 5 A1B9V CG C4 C 0 1 N N S N N N 111.011 145.331 149.652 -0.048 0.357 0.933 CG A1B9V 6 A1B9V CD1 C5 C 0 1 N N N N N N 110.369 145.076 150.797 -0.096 -1.071 1.511 CD1 A1B9V 7 A1B9V CD2 C6 C 0 1 Y N N N N N 112.471 145.430 149.799 -1.376 0.720 0.313 CD2 A1B9V 8 A1B9V CE2 C7 C 0 1 Y N N N N N 112.861 144.937 151.051 -2.185 -0.346 -0.027 CE2 A1B9V 9 A1B9V CE3 C8 C 0 1 Y N N N N N 113.438 145.910 148.927 -1.852 2.010 0.057 CE3 A1B9V 10 A1B9V CZ2 C9 C 0 1 Y N N N N N 114.185 144.908 151.458 -3.421 -0.150 -0.611 CZ2 A1B9V 11 A1B9V CZ3 C10 C 0 1 Y N N N N N 114.776 145.888 149.332 -3.085 2.208 -0.522 CZ3 A1B9V 12 A1B9V CH2 C11 C 0 1 Y N N N N N 115.150 145.392 150.581 -3.879 1.129 -0.862 CH2 A1B9V 13 A1B9V O1 O2 O 0 1 N N N N N N 111.399 145.015 153.340 -0.738 -2.250 -0.794 O1 A1B9V 14 A1B9V S S1 S 0 1 N N S N N N 111.476 144.368 151.997 -1.351 -1.846 0.423 S A1B9V 15 A1B9V H1 H1 H 0 1 N N N N N N 109.107 145.149 145.977 2.730 2.167 0.980 H1 A1B9V 16 A1B9V H2 H2 H 0 1 N N N N N N 109.527 143.588 145.741 2.045 1.289 2.215 H2 A1B9V 17 A1B9V H4 H4 H 0 1 N N N N N N 111.338 144.766 146.637 2.391 -0.761 1.050 H4 A1B9V 18 A1B9V H6 H6 H 0 1 N N N N N N 110.604 146.534 147.878 1.034 1.421 -0.596 H6 A1B9V 19 A1B9V H7 H7 H 0 1 N N N N N N 109.177 145.646 148.513 0.863 -0.325 -0.896 H7 A1B9V 20 A1B9V H8 H8 H 0 1 N N N N N N 111.087 144.256 149.431 0.181 1.061 1.733 H8 A1B9V 21 A1B9V H9 H9 H 0 1 N N N N N N 109.957 146.014 151.196 0.869 -1.567 1.413 H9 A1B9V 22 A1B9V H10 H10 H 0 1 N N N N N N 109.549 144.369 150.601 -0.428 -1.063 2.550 H10 A1B9V 23 A1B9V H11 H11 H 0 1 N N N N N N 113.163 146.293 147.955 -1.243 2.863 0.317 H11 A1B9V 24 A1B9V H12 H12 H 0 1 N N N N N N 114.460 144.521 152.428 -4.033 -1.001 -0.873 H12 A1B9V 25 A1B9V H13 H13 H 0 1 N N N N N N 115.537 146.263 148.663 -3.433 3.213 -0.711 H13 A1B9V 26 A1B9V H14 H14 H 0 1 N N N N N N 116.191 145.384 150.868 -4.845 1.284 -1.319 H14 A1B9V 27 A1B9V OXT OXT O 0 1 N Y N N Y Y 109.871 142.465 148.538 3.650 -0.978 -1.274 OXT A1B9V 28 A1B9V H3 H3 H 0 1 N N N N N N 110.218 141.685 148.954 4.344 -0.960 -1.948 H3 A1B9V 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1B9V N CA SING N N 1 A1B9V CA C SING N N 2 A1B9V CA CB SING N N 3 A1B9V C O DOUB N N 4 A1B9V CB CG SING N N 5 A1B9V CE3 CZ3 DOUB Y N 6 A1B9V CE3 CD2 SING Y N 7 A1B9V CZ3 CH2 SING Y N 8 A1B9V CG CD2 SING N N 9 A1B9V CG CD1 SING N N 10 A1B9V CD2 CE2 DOUB Y N 11 A1B9V CH2 CZ2 DOUB Y N 12 A1B9V CD1 S SING N N 13 A1B9V CE2 CZ2 SING Y N 14 A1B9V CE2 S SING N N 15 A1B9V S O1 DOUB N N 16 A1B9V N H1 SING N N 17 A1B9V N H2 SING N N 18 A1B9V CA H4 SING N N 19 A1B9V CB H6 SING N N 20 A1B9V CB H7 SING N N 21 A1B9V CG H8 SING N N 22 A1B9V CD1 H9 SING N N 23 A1B9V CD1 H10 SING N N 24 A1B9V CE3 H11 SING N N 25 A1B9V CZ2 H12 SING N N 26 A1B9V CZ3 H13 SING N N 27 A1B9V CH2 H14 SING N N 28 A1B9V C OXT SING N N 29 A1B9V OXT H3 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1B9V SMILES ACDLabs 14.52 "O=C(O)C(N)CC1CS(=O)c2ccccc21" A1B9V InChI InChI 1.06 "InChI=1S/C11H13NO3S/c12-9(11(13)14)5-7-6-16(15)10-4-2-1-3-8(7)10/h1-4,7,9H,5-6,12H2,(H,13,14)/t7-,9+,16+/m1/s1" A1B9V InChIKey InChI 1.06 DYLPYZQIFYBGGW-QICQVJHXSA-N A1B9V SMILES_CANONICAL CACTVS 3.385 "N[C@@H](C[C@@H]1C[S@](=O)c2ccccc12)C(O)=O" A1B9V SMILES CACTVS 3.385 "N[CH](C[CH]1C[S](=O)c2ccccc12)C(O)=O" A1B9V SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)C(CS2=O)C[C@@H](C(=O)O)N" A1B9V SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)C(CS2=O)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1B9V "SYSTEMATIC NAME" ACDLabs 14.52 "3-[(1S,3S)-1-oxo-2,3-dihydro-1H-1lambda~4~-benzothiophen-3-yl]-L-alanine" A1B9V "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-azanyl-3-(1-oxidanylidene-2,3-dihydro-1-benzothiophen-3-yl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1B9V "Create component" 2025-04-14 RCSB A1B9V "Modify PCM" 2025-04-14 RCSB A1B9V "Initial release" 2026-04-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1B9V _pdbx_chem_comp_pcm.modified_residue_id TRP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #