data_A1BAP # _chem_comp.id A1BAP _chem_comp.name "[(2S,4R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-2-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-25 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BAP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BAP N2 N1 N 0 1 Y N N N N N 14.741 -0.128 3.796 -0.749 -1.421 -0.981 N2 A1BAP 1 A1BAP C3 C1 C 0 1 N N N N N N 15.793 1.241 -0.572 2.891 0.930 -1.290 C3 A1BAP 2 A1BAP C6 C2 C 0 1 Y N N N N N 14.886 -0.112 5.167 -1.988 -1.841 -1.168 C6 A1BAP 3 A1BAP C9 C3 C 0 1 Y N N N N N 15.367 3.647 3.632 -1.751 1.901 0.515 C9 A1BAP 4 A1BAP C12 C4 C 0 1 N N N N N N 12.333 0.022 1.582 0.705 -0.781 1.989 C12 A1BAP 5 A1BAP C1 C5 C 0 1 N N N N N N 16.021 -1.249 -0.206 5.034 0.701 -0.022 C1 A1BAP 6 A1BAP C10 C6 C 0 1 Y N N N N N 15.602 4.269 4.853 -3.071 2.127 0.619 C10 A1BAP 7 A1BAP C11 C7 C 0 1 N N S N N N 13.474 0.743 0.865 1.507 -0.667 0.691 C11 A1BAP 8 A1BAP C13 C8 C 0 1 N N N N N N 13.755 -0.115 -0.367 2.886 -0.076 0.994 C13 A1BAP 9 A1BAP C2 C9 C 0 1 N N R N N N 15.194 -0.118 -0.833 3.678 0.054 -0.310 C2 A1BAP 10 A1BAP C4 C10 C 0 1 N N N N N N 15.669 1.740 0.868 1.513 0.309 -1.527 C4 A1BAP 11 A1BAP C5 C11 C 0 1 Y N N N N N 14.855 1.046 3.111 -0.503 -0.229 -0.445 C5 A1BAP 12 A1BAP C7 C12 C 0 1 Y N N N N N 15.274 2.099 5.272 -2.896 0.087 -0.299 C7 A1BAP 13 A1BAP C8 C13 C 0 1 Y N N N N N 15.146 2.243 3.854 -1.594 0.575 -0.081 C8 A1BAP 14 A1BAP N1 N2 N 0 1 N N N N N N 14.713 1.005 1.667 0.795 0.206 -0.250 N1 A1BAP 15 A1BAP N3 N3 N 0 1 Y N N N N N 15.148 0.934 5.958 -3.039 -1.121 -0.844 N3 A1BAP 16 A1BAP N4 N4 N 0 1 Y N N N N N 15.546 3.320 5.870 -3.766 1.049 0.134 N4 A1BAP 17 A1BAP O1 O1 O 0 1 N N N N N N 11.178 0.806 1.416 -0.521 -1.469 1.732 O1 A1BAP 18 A1BAP H6 H1 H 0 1 N N N N N N 16.862 1.196 -0.826 2.774 1.929 -0.871 H6 A1BAP 19 A1BAP H7 H2 H 0 1 N N N N N N 15.290 1.967 -1.228 3.430 0.992 -2.235 H7 A1BAP 20 A1BAP H10 H3 H 0 1 N N N N N N 14.774 -1.064 5.665 -2.143 -2.815 -1.607 H10 A1BAP 21 A1BAP H11 H4 H 0 1 N N N N N N 15.353 4.139 2.671 -0.957 2.569 0.815 H11 A1BAP 22 A1BAP H15 H5 H 0 1 N N N N N N 12.180 -0.974 1.140 1.285 -1.335 2.727 H15 A1BAP 23 A1BAP H14 H6 H 0 1 N N N N N N 12.567 -0.083 2.652 0.489 0.216 2.371 H14 A1BAP 24 A1BAP H5 H7 H 0 1 N N N N N N 15.545 -2.216 -0.424 4.881 1.688 0.416 H5 A1BAP 25 A1BAP H4 H8 H 0 1 N N N N N N 17.037 -1.238 -0.628 5.593 0.078 0.676 H4 A1BAP 26 A1BAP H3 H9 H 0 1 N N N N N N 16.075 -1.104 0.883 5.595 0.799 -0.951 H3 A1BAP 27 A1BAP H12 H10 H 0 1 N N N N N N 15.797 5.322 4.991 -3.517 3.023 1.023 H12 A1BAP 28 A1BAP H2 H11 H 0 1 N N N N N N 13.087 1.711 0.514 1.626 -1.657 0.249 H2 A1BAP 29 A1BAP H18 H12 H 0 1 N N N N N N 13.131 0.259 -1.192 2.768 0.907 1.449 H18 A1BAP 30 A1BAP H17 H13 H 0 1 N N N N N N 13.471 -1.151 -0.132 3.420 -0.733 1.681 H17 A1BAP 31 A1BAP H1 H14 H 0 1 N N N N N N 15.191 -0.278 -1.921 3.829 -0.933 -0.744 H1 A1BAP 32 A1BAP H8 H15 H 0 1 N N N N N N 16.655 1.659 1.348 0.945 0.938 -2.213 H8 A1BAP 33 A1BAP H9 H16 H 0 1 N N N N N N 15.359 2.795 0.843 1.631 -0.685 -1.958 H9 A1BAP 34 A1BAP H13 H17 H 0 1 N N N N N N 15.677 3.487 6.847 -4.733 0.979 0.105 H13 A1BAP 35 A1BAP H16 H18 H 0 1 N N N N N N 10.445 0.387 1.851 -1.082 -1.578 2.512 H16 A1BAP 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BAP C2 C3 SING N N 1 A1BAP C2 C13 SING N N 2 A1BAP C2 C1 SING N N 3 A1BAP C3 C4 SING N N 4 A1BAP C13 C11 SING N N 5 A1BAP C11 C12 SING N N 6 A1BAP C11 N1 SING N N 7 A1BAP C4 N1 SING N N 8 A1BAP O1 C12 SING N N 9 A1BAP N1 C5 SING N N 10 A1BAP C5 N2 DOUB Y N 11 A1BAP C5 C8 SING Y N 12 A1BAP C9 C8 SING Y N 13 A1BAP C9 C10 DOUB Y N 14 A1BAP N2 C6 SING Y N 15 A1BAP C8 C7 DOUB Y N 16 A1BAP C10 N4 SING Y N 17 A1BAP C6 N3 DOUB Y N 18 A1BAP C7 N4 SING Y N 19 A1BAP C7 N3 SING Y N 20 A1BAP C3 H6 SING N N 21 A1BAP C3 H7 SING N N 22 A1BAP C6 H10 SING N N 23 A1BAP C9 H11 SING N N 24 A1BAP C12 H15 SING N N 25 A1BAP C12 H14 SING N N 26 A1BAP C1 H5 SING N N 27 A1BAP C1 H4 SING N N 28 A1BAP C1 H3 SING N N 29 A1BAP C10 H12 SING N N 30 A1BAP C11 H2 SING N N 31 A1BAP C13 H18 SING N N 32 A1BAP C13 H17 SING N N 33 A1BAP C2 H1 SING N N 34 A1BAP C4 H8 SING N N 35 A1BAP C4 H9 SING N N 36 A1BAP N4 H13 SING N N 37 A1BAP O1 H16 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BAP SMILES ACDLabs 14.52 "OCC1CC(C)CCN1c1ncnc2[NH]ccc12" A1BAP InChI InChI 1.06 "InChI=1S/C13H18N4O/c1-9-3-5-17(10(6-9)7-18)13-11-2-4-14-12(11)15-8-16-13/h2,4,8-10,18H,3,5-7H2,1H3,(H,14,15,16)/t9-,10+/m1/s1" A1BAP InChIKey InChI 1.06 WWFHMNWJIHDZIZ-ZJUUUORDSA-N A1BAP SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CCN([C@H](CO)C1)c2ncnc3[nH]ccc23" A1BAP SMILES CACTVS 3.385 "C[CH]1CCN([CH](CO)C1)c2ncnc3[nH]ccc23" A1BAP SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CCN([C@@H](C1)CO)c2c3cc[nH]c3ncn2" A1BAP SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCN(C(C1)CO)c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BAP "SYSTEMATIC NAME" ACDLabs 14.52 "[(2S,4R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-2-yl]methanol" A1BAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(2~{S},4~{R})-4-methyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-2-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BAP "Create component" 2024-09-25 RCSB A1BAP "Initial release" 2025-06-11 RCSB #