data_A1BAT # _chem_comp.id A1BAT _chem_comp.name "1-{[(5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-25 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BAT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HF6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BAT N2 N1 N 0 1 Y N N N N N 15.184 1.266 6.394 -3.477 1.717 -0.167 N2 A1BAT 1 A1BAT C3 C1 C 0 1 Y N N N N N 15.484 4.619 5.174 -3.663 -1.837 -0.040 C3 A1BAT 2 A1BAT C6 C2 C 0 1 Y N N N N N 15.132 1.299 3.520 -0.991 0.638 0.031 C6 A1BAT 3 A1BAT C9 C3 C 0 1 N N N N N N 12.462 0.042 1.579 2.955 -0.666 -1.003 C9 A1BAT 4 A1BAT C12 C4 C 0 1 N N N N N N 13.309 1.213 -0.394 3.976 1.080 0.327 C12 A1BAT 5 A1BAT C1 C5 C 0 1 N N N N N N 15.416 4.612 2.596 -1.277 -2.710 0.143 C1 A1BAT 6 A1BAT C10 C6 C 0 1 N N N N N N 11.318 0.882 0.971 4.475 -0.934 -1.014 C10 A1BAT 7 A1BAT C11 C7 C 0 1 N N N N N N 11.810 1.484 -0.357 5.123 0.176 -0.169 C11 A1BAT 8 A1BAT C13 C8 C 0 1 Y N N N N N 15.262 2.543 4.234 -2.117 -0.198 -0.007 C13 A1BAT 9 A1BAT C2 C9 C 0 1 Y N N N N N 15.398 3.962 3.939 -2.336 -1.643 0.036 C2 A1BAT 10 A1BAT C4 C10 C 0 1 Y N N N N N 15.279 2.423 5.674 -3.391 0.389 -0.110 C4 A1BAT 11 A1BAT C5 C11 C 0 1 Y N N N N N 15.061 0.167 5.643 -2.394 2.463 -0.127 C5 A1BAT 12 A1BAT C7 C12 C 0 1 N N N N N N 15.021 0.103 1.223 1.445 0.998 0.171 C7 A1BAT 13 A1BAT C8 C13 C 0 1 N N N N N N 13.595 -0.013 0.511 2.723 0.164 0.284 C8 A1BAT 14 A1BAT N1 N2 N 0 1 Y N N N N N 15.417 3.678 6.156 -4.305 -0.629 -0.128 N1 A1BAT 15 A1BAT N3 N3 N 0 1 Y N N N N N 15.032 0.137 4.254 -1.180 1.953 -0.032 N3 A1BAT 16 A1BAT N4 N4 N 0 1 N N N N N N 15.106 1.285 2.097 0.283 0.108 0.133 N4 A1BAT 17 A1BAT O1 O1 O 0 1 N N N N N N 13.552 -1.205 -0.228 2.673 -0.680 1.436 O1 A1BAT 18 A1BAT H4 H1 H 0 1 N N N N N N 15.586 5.684 5.321 -4.151 -2.800 -0.034 H4 A1BAT 19 A1BAT H11 H2 H 0 1 N N N N N N 12.106 -0.974 1.807 2.662 -0.095 -1.883 H11 A1BAT 20 A1BAT H12 H3 H 0 1 N N N N N N 12.832 0.516 2.500 2.403 -1.604 -0.956 H12 A1BAT 21 A1BAT H17 H4 H 0 1 N N N N N N 13.624 0.998 -1.426 4.168 1.416 1.346 H17 A1BAT 22 A1BAT H18 H5 H 0 1 N N N N N N 13.857 2.090 -0.019 3.847 1.933 -0.339 H18 A1BAT 23 A1BAT H1 H6 H 0 1 N N N N N N 14.388 4.867 2.298 -1.086 -2.927 1.194 H1 A1BAT 24 A1BAT H2 H7 H 0 1 N N N N N N 16.023 5.528 2.640 -1.620 -3.614 -0.358 H2 A1BAT 25 A1BAT H3 H8 H 0 1 N N N N N N 15.850 3.920 1.860 -0.359 -2.359 -0.328 H3 A1BAT 26 A1BAT H13 H9 H 0 1 N N N N N N 11.041 1.689 1.665 4.685 -1.909 -0.575 H13 A1BAT 27 A1BAT H14 H10 H 0 1 N N N N N N 10.444 0.241 0.787 4.853 -0.896 -2.036 H14 A1BAT 28 A1BAT H15 H11 H 0 1 N N N N N N 11.614 2.566 -0.385 5.817 0.754 -0.780 H15 A1BAT 29 A1BAT H16 H12 H 0 1 N N N N N N 11.310 0.999 -1.208 5.648 -0.260 0.681 H16 A1BAT 30 A1BAT H6 H13 H 0 1 N N N N N N 14.977 -0.778 6.160 -2.503 3.536 -0.176 H6 A1BAT 31 A1BAT H9 H14 H 0 1 N N N N N N 15.190 -0.800 1.829 1.367 1.662 1.032 H9 A1BAT 32 A1BAT H8 H15 H 0 1 N N N N N N 15.799 0.177 0.449 1.479 1.592 -0.743 H8 A1BAT 33 A1BAT H5 H16 H 0 1 N N N N N N 15.465 3.893 7.131 -5.266 -0.513 -0.193 H5 A1BAT 34 A1BAT H7 H17 H 0 1 N N N N N N 15.947 1.750 1.820 0.406 -0.853 0.178 H7 A1BAT 35 A1BAT H10 H18 H 0 1 N N N N N N 13.730 -1.941 0.346 1.909 -1.272 1.457 H10 A1BAT 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BAT C12 C11 SING N N 1 A1BAT C12 C8 SING N N 2 A1BAT C11 C10 SING N N 3 A1BAT O1 C8 SING N N 4 A1BAT C8 C7 SING N N 5 A1BAT C8 C9 SING N N 6 A1BAT C10 C9 SING N N 7 A1BAT C7 N4 SING N N 8 A1BAT N4 C6 SING N N 9 A1BAT C1 C2 SING N N 10 A1BAT C6 C13 DOUB Y N 11 A1BAT C6 N3 SING Y N 12 A1BAT C2 C13 SING Y N 13 A1BAT C2 C3 DOUB Y N 14 A1BAT C13 C4 SING Y N 15 A1BAT N3 C5 DOUB Y N 16 A1BAT C3 N1 SING Y N 17 A1BAT C5 N2 SING Y N 18 A1BAT C4 N1 SING Y N 19 A1BAT C4 N2 DOUB Y N 20 A1BAT C3 H4 SING N N 21 A1BAT C9 H11 SING N N 22 A1BAT C9 H12 SING N N 23 A1BAT C12 H17 SING N N 24 A1BAT C12 H18 SING N N 25 A1BAT C1 H1 SING N N 26 A1BAT C1 H2 SING N N 27 A1BAT C1 H3 SING N N 28 A1BAT C10 H13 SING N N 29 A1BAT C10 H14 SING N N 30 A1BAT C11 H15 SING N N 31 A1BAT C11 H16 SING N N 32 A1BAT C5 H6 SING N N 33 A1BAT C7 H9 SING N N 34 A1BAT C7 H8 SING N N 35 A1BAT N1 H5 SING N N 36 A1BAT N4 H7 SING N N 37 A1BAT O1 H10 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BAT SMILES ACDLabs 14.52 "OC1(CCCC1)CNc1ncnc2[NH]cc(C)c21" A1BAT InChI InChI 1.06 "InChI=1S/C13H18N4O/c1-9-6-14-11-10(9)12(17-8-16-11)15-7-13(18)4-2-3-5-13/h6,8,18H,2-5,7H2,1H3,(H2,14,15,16,17)" A1BAT InChIKey InChI 1.06 IDMIYQFXNXRFAV-UHFFFAOYSA-N A1BAT SMILES_CANONICAL CACTVS 3.385 "Cc1c[nH]c2ncnc(NCC3(O)CCCC3)c12" A1BAT SMILES CACTVS 3.385 "Cc1c[nH]c2ncnc(NCC3(O)CCCC3)c12" A1BAT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c[nH]c2c1c(ncn2)NCC3(CCCC3)O" A1BAT SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c[nH]c2c1c(ncn2)NCC3(CCCC3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BAT "SYSTEMATIC NAME" ACDLabs 14.52 "1-{[(5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" A1BAT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[[(5-methyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl]cyclopentan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BAT "Create component" 2024-09-25 RCSB A1BAT "Initial release" 2025-06-11 RCSB #