data_A1BAV # _chem_comp.id A1BAV _chem_comp.name "4-{[(5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}oxan-4-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-25 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 262.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BAV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HF9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BAV N2 N1 N 0 1 Y N N N N N 15.316 1.262 6.332 -3.833 1.641 0.241 N2 A1BAV 1 A1BAV C3 C1 C 0 1 Y N N N N N 15.610 4.532 4.938 -3.884 -1.910 -0.027 C3 A1BAV 2 A1BAV C6 C2 C 0 1 Y N N N N N 15.204 1.143 3.488 -1.308 0.666 -0.008 C6 A1BAV 3 A1BAV C9 C3 C 0 1 N N N N N N 12.765 -0.027 0.616 3.606 1.307 -0.171 C9 A1BAV 4 A1BAV C12 C4 C 0 1 N N N N N N 13.991 -2.094 0.193 2.519 -0.707 0.820 C12 A1BAV 5 A1BAV C1 C5 C 0 1 N N N N N N 15.485 4.314 2.419 -1.467 -2.683 -0.253 C1 A1BAV 6 A1BAV C10 C6 C 0 1 N N N N N N 11.497 -0.740 0.058 4.910 0.508 -0.242 C10 A1BAV 7 A1BAV C11 C7 C 0 1 N N N N N N 12.699 -2.863 0.230 3.865 -1.428 0.710 C11 A1BAV 8 A1BAV C13 C8 C 0 1 Y N N N N N 15.359 2.411 4.127 -2.401 -0.214 0.001 C13 A1BAV 9 A1BAV C2 C9 C 0 1 Y N N N N N 15.496 3.767 3.775 -2.565 -1.663 -0.099 C2 A1BAV 10 A1BAV C4 C10 C 0 1 Y N N N N N 15.407 2.380 5.550 -3.697 0.320 0.131 C4 A1BAV 11 A1BAV C5 C11 C 0 1 Y N N N N N 15.179 0.138 5.613 -2.779 2.428 0.229 C5 A1BAV 12 A1BAV C7 C12 C 0 1 N N N N N N 15.204 -0.253 1.389 1.112 1.125 -0.139 C7 A1BAV 13 A1BAV C8 C13 C 0 1 N N N N N N 13.852 -0.964 1.192 2.420 0.345 -0.288 C8 A1BAV 14 A1BAV N1 N2 N 0 1 Y N N N N N 15.565 3.667 6.041 -4.571 -0.732 0.111 N1 A1BAV 15 A1BAV N3 N3 N 0 1 Y N N N N N 15.118 0.004 4.246 -1.546 1.969 0.108 N3 A1BAV 16 A1BAV N4 N4 N 0 1 N N N N N N 15.146 1.013 2.114 -0.016 0.190 -0.133 N4 A1BAV 17 A1BAV O1 O1 O 0 1 N N N N N N 13.374 -1.415 2.428 2.452 -0.299 -1.564 O1 A1BAV 18 A1BAV O2 O2 O 0 1 N N N N N N 11.656 -2.105 -0.353 4.924 -0.473 0.797 O2 A1BAV 19 A1BAV H4 H1 H 0 1 N N N N N N 15.715 5.606 4.981 -4.335 -2.890 -0.071 H4 A1BAV 20 A1BAV H11 H2 H 0 1 N N N N N N 13.216 0.554 -0.202 3.554 1.835 0.782 H11 A1BAV 21 A1BAV H12 H3 H 0 1 N N N N N N 12.446 0.656 1.417 3.574 2.027 -0.988 H12 A1BAV 22 A1BAV H17 H4 H 0 1 N N N N N N 14.830 -2.748 0.474 1.709 -1.429 0.710 H17 A1BAV 23 A1BAV H18 H5 H 0 1 N N N N N N 14.163 -1.690 -0.815 2.444 -0.220 1.792 H18 A1BAV 24 A1BAV H3 H6 H 0 1 N N N N N N 14.452 4.554 2.128 -1.131 -3.007 0.732 H3 A1BAV 25 A1BAV H1 H7 H 0 1 N N N N N N 16.096 5.228 2.388 -1.844 -3.541 -0.809 H1 A1BAV 26 A1BAV H2 H8 H 0 1 N N N N N N 15.899 3.572 1.721 -0.631 -2.238 -0.793 H2 A1BAV 27 A1BAV H13 H9 H 0 1 N N N N N N 11.149 -0.167 -0.814 4.981 0.014 -1.211 H13 A1BAV 28 A1BAV H14 H10 H 0 1 N N N N N N 10.728 -0.716 0.844 5.757 1.183 -0.116 H14 A1BAV 29 A1BAV H16 H11 H 0 1 N N N N N N 12.442 -3.089 1.275 3.958 -2.149 1.523 H16 A1BAV 30 A1BAV H15 H12 H 0 1 N N N N N N 12.820 -3.802 -0.329 3.921 -1.949 -0.246 H15 A1BAV 31 A1BAV H6 H13 H 0 1 N N N N N N 15.108 -0.778 6.180 -2.928 3.494 0.321 H6 A1BAV 32 A1BAV H8 H14 H 0 1 N N N N N N 15.867 -0.932 1.945 1.127 1.683 0.797 H8 A1BAV 33 A1BAV H9 H15 H 0 1 N N N N N N 15.632 -0.056 0.395 1.005 1.818 -0.974 H9 A1BAV 34 A1BAV H5 H16 H 0 1 N N N N N N 15.634 3.930 7.003 -5.535 -0.655 0.182 H5 A1BAV 35 A1BAV H7 H17 H 0 1 N N N N N N 15.908 1.557 1.762 0.144 -0.763 -0.216 H7 A1BAV 36 A1BAV H10 H18 H 0 1 N N N N N N 13.300 -0.681 3.026 1.728 -0.924 -1.707 H10 A1BAV 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BAV O2 C10 SING N N 1 A1BAV O2 C11 SING N N 2 A1BAV C10 C9 SING N N 3 A1BAV C12 C11 SING N N 4 A1BAV C12 C8 SING N N 5 A1BAV C9 C8 SING N N 6 A1BAV C8 C7 SING N N 7 A1BAV C8 O1 SING N N 8 A1BAV C7 N4 SING N N 9 A1BAV N4 C6 SING N N 10 A1BAV C1 C2 SING N N 11 A1BAV C6 C13 DOUB Y N 12 A1BAV C6 N3 SING Y N 13 A1BAV C2 C13 SING Y N 14 A1BAV C2 C3 DOUB Y N 15 A1BAV C13 C4 SING Y N 16 A1BAV N3 C5 DOUB Y N 17 A1BAV C3 N1 SING Y N 18 A1BAV C4 N1 SING Y N 19 A1BAV C4 N2 DOUB Y N 20 A1BAV C5 N2 SING Y N 21 A1BAV C3 H4 SING N N 22 A1BAV C9 H11 SING N N 23 A1BAV C9 H12 SING N N 24 A1BAV C12 H17 SING N N 25 A1BAV C12 H18 SING N N 26 A1BAV C1 H3 SING N N 27 A1BAV C1 H1 SING N N 28 A1BAV C1 H2 SING N N 29 A1BAV C10 H13 SING N N 30 A1BAV C10 H14 SING N N 31 A1BAV C11 H16 SING N N 32 A1BAV C11 H15 SING N N 33 A1BAV C5 H6 SING N N 34 A1BAV C7 H8 SING N N 35 A1BAV C7 H9 SING N N 36 A1BAV N1 H5 SING N N 37 A1BAV N4 H7 SING N N 38 A1BAV O1 H10 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BAV SMILES ACDLabs 14.52 "OC1(CNc2ncnc3[NH]cc(C)c32)CCOCC1" A1BAV InChI InChI 1.06 "InChI=1S/C13H18N4O2/c1-9-6-14-11-10(9)12(17-8-16-11)15-7-13(18)2-4-19-5-3-13/h6,8,18H,2-5,7H2,1H3,(H2,14,15,16,17)" A1BAV InChIKey InChI 1.06 IBPXIYCBLMCNDD-UHFFFAOYSA-N A1BAV SMILES_CANONICAL CACTVS 3.385 "Cc1c[nH]c2ncnc(NCC3(O)CCOCC3)c12" A1BAV SMILES CACTVS 3.385 "Cc1c[nH]c2ncnc(NCC3(O)CCOCC3)c12" A1BAV SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c[nH]c2c1c(ncn2)NCC3(CCOCC3)O" A1BAV SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c[nH]c2c1c(ncn2)NCC3(CCOCC3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BAV "SYSTEMATIC NAME" ACDLabs 14.52 "4-{[(5-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}oxan-4-ol" A1BAV "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[[(5-methyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl]oxan-4-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BAV "Create component" 2024-09-25 RCSB A1BAV "Initial release" 2025-06-11 RCSB #