data_A1BBA # _chem_comp.id A1BBA _chem_comp.name "(1R)-1-(2-amino-8-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H18 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-29 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BBA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9D5K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BBA C1 C1 C 0 1 Y N N N N N 37.199 35.790 40.112 1.293 -1.390 -0.289 C1 A1BBA 1 A1BBA "C1'" C2 C 0 1 N N R N Y N 37.149 34.685 41.076 -0.054 -2.067 -0.286 "C1'" A1BBA 2 A1BBA C19 C3 C 0 1 N N N N N N 34.468 38.120 39.113 4.829 -2.241 -1.311 C19 A1BBA 3 A1BBA C2 C4 C 0 1 Y N N N N N 38.322 36.108 39.334 1.408 -0.112 0.183 C2 A1BBA 4 A1BBA "C2'" C5 C 0 1 N N N N Y N 36.697 35.168 42.455 -0.388 -2.612 1.126 "C2'" A1BBA 5 A1BBA C21 C6 C 0 1 N N N N N N 37.891 39.304 36.647 5.128 1.665 0.140 C21 A1BBA 6 A1BBA C23 C7 C 0 1 N N N N N N 39.321 37.577 37.499 2.839 1.883 0.674 C23 A1BBA 7 A1BBA C3 C8 C 0 1 Y N N N N N 38.218 37.133 38.402 2.655 0.512 0.180 C3 A1BBA 8 A1BBA "C3'" C9 C 0 1 N N S N Y N 36.096 33.885 43.027 -1.935 -2.660 1.098 "C3'" A1BBA 9 A1BBA C4 C10 C 0 1 Y N N N N N 36.935 37.874 38.274 3.787 -0.179 -0.309 C4 A1BBA 10 A1BBA "C4'" C11 C 0 1 N N R N Y N 35.752 33.016 41.818 -2.322 -1.681 -0.027 "C4'" A1BBA 11 A1BBA C5 C12 C 0 1 Y N N N N N 35.797 37.469 39.114 3.637 -1.485 -0.784 C5 A1BBA 12 A1BBA "C5'" C13 C 0 1 N N N N Y N 34.289 32.772 41.618 -3.226 -0.579 0.531 "C5'" A1BBA 13 A1BBA C6 C14 C 0 1 Y N N N N N 35.986 36.447 39.995 2.404 -2.074 -0.765 C6 A1BBA 14 A1BBA N20 N1 N 0 1 N N N N N N 36.848 38.920 37.426 4.990 0.442 -0.306 N20 A1BBA 15 A1BBA N22 N2 N 0 1 N N N N N N 39.096 38.640 36.677 4.088 2.402 0.629 N22 A1BBA 16 A1BBA N24 N3 N 0 1 N N N N N N 37.715 40.328 35.779 6.376 2.234 0.114 N24 A1BBA 17 A1BBA O25 O1 O 0 1 N N N N N N 40.445 37.058 37.486 1.903 2.529 1.107 O25 A1BBA 18 A1BBA "O3'" O2 O 0 1 N N N N Y N 37.178 33.240 43.701 -2.389 -3.980 0.791 "O3'" A1BBA 19 A1BBA "O4'" O3 O 0 1 N N N N Y N 36.149 33.730 40.651 -1.105 -1.109 -0.534 "O4'" A1BBA 20 A1BBA "O5'" O4 O 0 1 N N N N Y N 33.727 34.041 41.404 -3.674 0.257 -0.538 "O5'" A1BBA 21 A1BBA OP1 O5 O 0 1 N N N N Y N 31.437 32.917 41.101 -4.044 2.434 0.685 OP1 A1BBA 22 A1BBA OP2 O6 O 0 1 N N N N Y N 31.567 35.247 40.477 -4.836 2.304 -1.708 OP2 A1BBA 23 A1BBA P P1 P 0 1 N N N N Y N 32.361 33.968 40.550 -4.645 1.522 -0.314 P A1BBA 24 A1BBA "H1'" H1 H 0 1 N N N N Y N 38.135 34.204 41.160 -0.081 -2.869 -1.023 "H1'" A1BBA 25 A1BBA H5A H2 H 0 1 N N N N N N 33.813 37.617 38.387 5.302 -2.788 -0.495 H5A A1BBA 26 A1BBA H5B H3 H 0 1 N N N N N N 34.024 38.049 40.117 4.504 -2.944 -2.078 H5B A1BBA 27 A1BBA H5C H4 H 0 1 N N N N N N 34.579 39.178 38.835 5.543 -1.539 -1.741 H5C A1BBA 28 A1BBA H2 H5 H 0 1 N N N N N N 39.249 35.567 39.457 0.539 0.411 0.556 H2 A1BBA 29 A1BBA "H2''" H6 H 0 0 N N N N Y N 37.546 35.521 43.058 0.030 -3.610 1.266 "H2''" A1BBA 30 A1BBA "H2'" H7 H 0 1 N N N N Y N 35.945 35.967 42.377 -0.033 -1.932 1.900 "H2'" A1BBA 31 A1BBA "H3'" H8 H 0 1 N N N N Y N 35.222 34.080 43.666 -2.344 -2.329 2.053 "H3'" A1BBA 32 A1BBA "H4'" H9 H 0 1 N N N N Y N 36.285 32.057 41.892 -2.840 -2.216 -0.822 "H4'" A1BBA 33 A1BBA "H5'" H10 H 0 1 N N N N Y N 33.851 32.302 42.511 -4.086 -1.030 1.026 "H5'" A1BBA 34 A1BBA "H5''" H11 H 0 0 N N N N Y N 34.122 32.125 40.744 -2.666 0.020 1.251 "H5''" A1BBA 35 A1BBA H6 H12 H 0 1 N N N N N N 35.163 36.139 40.623 2.291 -3.084 -1.130 H6 A1BBA 36 A1BBA H22 H13 H 0 1 N N N N N N 39.832 38.948 36.074 4.246 3.304 0.947 H22 A1BBA 37 A1BBA H24A H14 H 0 0 N N N N N N 36.828 40.787 35.720 6.504 3.139 0.438 H24A A1BBA 38 A1BBA H24B H15 H 0 0 N N N N N N 38.472 40.625 35.197 7.131 1.730 -0.228 H24B A1BBA 39 A1BBA "HO3'" H16 H 0 0 N Y N N Y N 37.425 33.750 44.464 -2.122 -4.648 1.437 "HO3'" A1BBA 40 A1BBA HOP3 H17 H 0 0 N Y N N Y N 32.499 32.749 38.829 -6.529 0.409 -0.389 HOP3 A1BBA 41 A1BBA HOP2 H18 H 0 0 N N N N Y N 30.684 35.091 40.791 -5.411 3.079 -1.648 HOP2 A1BBA 42 A1BBA OP3 OP3 O 0 1 N Y N N Y N 32.875 33.582 39.088 -6.077 1.012 0.217 OP3 A1BBA 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BBA N24 C21 SING N N 1 A1BBA C21 N22 SING N N 2 A1BBA C21 N20 DOUB N N 3 A1BBA N22 C23 SING N N 4 A1BBA N20 C4 SING N N 5 A1BBA O25 C23 DOUB N N 6 A1BBA C23 C3 SING N N 7 A1BBA C4 C3 DOUB Y N 8 A1BBA C4 C5 SING Y N 9 A1BBA C3 C2 SING Y N 10 A1BBA C19 C5 SING N N 11 A1BBA C5 C6 DOUB Y N 12 A1BBA C2 C1 DOUB Y N 13 A1BBA C6 C1 SING Y N 14 A1BBA C1 "C1'" SING N N 15 A1BBA OP2 P SING N N 16 A1BBA P OP1 DOUB N N 17 A1BBA P "O5'" SING N N 18 A1BBA "O4'" "C1'" SING N N 19 A1BBA "O4'" "C4'" SING N N 20 A1BBA "C1'" "C2'" SING N N 21 A1BBA "O5'" "C5'" SING N N 22 A1BBA "C5'" "C4'" SING N N 23 A1BBA "C4'" "C3'" SING N N 24 A1BBA "C2'" "C3'" SING N N 25 A1BBA "C3'" "O3'" SING N N 26 A1BBA "C1'" "H1'" SING N N 27 A1BBA C19 H5A SING N N 28 A1BBA C19 H5B SING N N 29 A1BBA C19 H5C SING N N 30 A1BBA C2 H2 SING N N 31 A1BBA "C2'" "H2''" SING N N 32 A1BBA "C2'" "H2'" SING N N 33 A1BBA "C3'" "H3'" SING N N 34 A1BBA "C4'" "H4'" SING N N 35 A1BBA "C5'" "H5'" SING N N 36 A1BBA "C5'" "H5''" SING N N 37 A1BBA C6 H6 SING N N 38 A1BBA N22 H22 SING N N 39 A1BBA N24 H24A SING N N 40 A1BBA N24 H24B SING N N 41 A1BBA "O3'" "HO3'" SING N N 42 A1BBA OP2 HOP2 SING N N 43 A1BBA P OP3 SING N N 44 A1BBA OP3 HOP3 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BBA SMILES ACDLabs 14.52 "OP(=O)(O)OCC1OC(CC1O)c1cc(C)c2N=C(N)NC(=O)c2c1" A1BBA InChI InChI 1.06 "InChI=1S/C14H18N3O7P/c1-6-2-7(3-8-12(6)16-14(15)17-13(8)19)10-4-9(18)11(24-10)5-23-25(20,21)22/h2-3,9-11,18H,4-5H2,1H3,(H2,20,21,22)(H3,15,16,17,19)/t9-,10+,11+/m0/s1" A1BBA InChIKey InChI 1.06 QUXDYBVOKGOJDY-HBNTYKKESA-N A1BBA SMILES_CANONICAL CACTVS 3.385 "Cc1cc(cc2C(=O)NC(=Nc12)N)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" A1BBA SMILES CACTVS 3.385 "Cc1cc(cc2C(=O)NC(=Nc12)N)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" A1BBA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc2c1N=C(NC2=O)N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" A1BBA SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc2c1N=C(NC2=O)N)C3CC(C(O3)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BBA "SYSTEMATIC NAME" ACDLabs 14.52 "(1R)-1-(2-amino-8-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol" A1BBA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},5~{R})-5-(2-azanyl-8-methyl-4-oxidanylidene-3~{H}-quinazolin-6-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BBA "Create component" 2024-09-29 RCSB A1BBA "Initial release" 2024-11-06 RCSB #