data_A1BBD # _chem_comp.id A1BBD _chem_comp.name "[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)-6-oxo-1,6-dihydropyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-29 _chem_comp.pdbx_modified_date 2025-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BBD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DA3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BBD C12 C1 C 0 1 N N N N N N -25.682 -12.784 -8.835 0.569 -1.004 -0.210 C12 A1BBD 1 A1BBD C11 C2 C 0 1 N N N N N N -27.292 -15.902 -7.642 3.461 -0.116 0.741 C11 A1BBD 2 A1BBD C10 C3 C 0 1 N N N N N N -26.869 -17.753 -5.909 5.575 -1.429 0.863 C10 A1BBD 3 A1BBD C01 C4 C 0 1 N N R N N N -24.180 -12.896 -9.155 -0.673 -1.541 -0.954 C01 A1BBD 4 A1BBD C02 C5 C 0 1 N N R N N N -24.056 -14.356 -9.758 -1.676 -0.369 -0.958 C02 A1BBD 5 A1BBD C03 C6 C 0 1 N N N N N N -23.431 -15.323 -8.650 -2.955 -0.762 -0.215 C03 A1BBD 6 A1BBD C04 C7 C 0 1 N N N N N N -25.277 -14.795 -10.092 -0.956 0.777 -0.216 C04 A1BBD 7 A1BBD C05 C8 C 0 1 N N N N N N -27.671 -14.038 -9.360 1.285 1.154 0.665 C05 A1BBD 8 A1BBD C06 C9 C 0 1 N N N N N N -27.735 -14.594 -7.909 2.751 1.025 0.340 C06 A1BBD 9 A1BBD C07 C10 C 0 1 N N N N N N -28.250 -13.802 -6.882 3.384 2.010 -0.339 C07 A1BBD 10 A1BBD C08 C11 C 0 1 N N N N N N -27.866 -15.486 -5.377 5.411 0.823 -0.272 C08 A1BBD 11 A1BBD C09 C12 C 0 1 N N N N N N -27.351 -16.348 -6.333 4.787 -0.216 0.439 C09 A1BBD 12 A1BBD N01 N1 N 0 1 N N N N N N -26.304 -13.578 -9.737 0.493 0.472 -0.367 N01 A1BBD 13 A1BBD N02 N2 N 0 1 N N N N N N -28.298 -14.259 -5.635 4.704 1.909 -0.638 N02 A1BBD 14 A1BBD O01 O1 O 0 1 N N N N N N -23.733 -11.972 -10.046 -0.330 -1.908 -2.292 O01 A1BBD 15 A1BBD O02 O2 O 0 1 N N N N N N -23.432 -16.614 -9.233 -3.914 0.291 -0.329 O02 A1BBD 16 A1BBD O03 O3 O 0 1 N N N N N N -22.959 -19.037 -9.275 -6.069 -1.008 -0.128 O03 A1BBD 17 A1BBD O04 O4 O 0 1 N N N N N N -21.483 -17.555 -7.896 -5.242 0.183 1.937 O04 A1BBD 18 A1BBD O05 O5 O 0 1 N N N N N N -23.825 -17.940 -7.139 -6.232 1.511 -0.104 O05 A1BBD 19 A1BBD O06 O6 O 0 1 N N N N N N -27.934 -15.921 -4.051 6.598 0.746 -0.549 O06 A1BBD 20 A1BBD O07 O7 O 0 1 N N N N N N -26.317 -18.455 -7.007 4.718 -2.332 1.564 O07 A1BBD 21 A1BBD P01 P1 P 0 1 N N N N N N -22.904 -17.864 -8.336 -5.379 0.217 0.334 P01 A1BBD 22 A1BBD H1 H1 H 0 1 N N N N N N -26.021 -11.743 -8.941 0.528 -1.277 0.844 H1 A1BBD 23 A1BBD H2 H2 H 0 1 N N N N N N -25.884 -13.133 -7.812 1.481 -1.388 -0.666 H2 A1BBD 24 A1BBD H3 H3 H 0 1 N N N N N N -26.918 -16.537 -8.432 2.964 -0.904 1.286 H3 A1BBD 25 A1BBD H4 H4 H 0 1 N N N N N N -27.723 -18.321 -5.512 5.981 -1.925 -0.019 H4 A1BBD 26 A1BBD H5 H5 H 0 1 N N N N N N -26.102 -17.649 -5.127 6.391 -1.122 1.516 H5 A1BBD 27 A1BBD H6 H6 H 0 1 N N N N N N -23.611 -12.859 -8.214 -1.091 -2.396 -0.423 H6 A1BBD 28 A1BBD H7 H7 H 0 1 N N N N N N -23.374 -14.325 -10.620 -1.908 -0.073 -1.981 H7 A1BBD 29 A1BBD H8 H8 H 0 1 N N N N N N -22.405 -15.013 -8.403 -3.362 -1.674 -0.651 H8 A1BBD 30 A1BBD H9 H9 H 0 1 N N N N N N -24.046 -15.312 -7.738 -2.726 -0.933 0.837 H9 A1BBD 31 A1BBD H10 H10 H 0 1 N N N N N N -25.319 -15.029 -11.166 -1.192 1.736 -0.678 H10 A1BBD 32 A1BBD H11 H11 H 0 1 N N N N N N -25.533 -15.693 -9.511 -1.235 0.783 0.837 H11 A1BBD 33 A1BBD H12 H12 H 0 1 N N N N N N -28.364 -13.188 -9.443 1.087 0.700 1.635 H12 A1BBD 34 A1BBD H13 H13 H 0 1 N N N N N N -27.980 -14.832 -10.056 1.011 2.209 0.695 H13 A1BBD 35 A1BBD H14 H14 H 0 1 N N N N N N -28.656 -13.684 -4.899 5.142 2.624 -1.126 H14 A1BBD 36 A1BBD H15 H15 H 0 1 N N N N N N -28.613 -12.809 -7.102 2.832 2.887 -0.646 H15 A1BBD 37 A1BBD H17 H17 H 0 1 N N N N N N -23.814 -11.103 -9.670 0.332 -2.611 -2.349 H17 A1BBD 38 A1BBD H18 H18 H 0 1 N N N N N N -20.884 -18.170 -8.303 -4.798 0.957 2.311 H18 A1BBD 39 A1BBD H19 H19 H 0 1 N N N N N N -24.316 -18.753 -7.168 -7.128 1.533 0.259 H19 A1BBD 40 A1BBD H20 H20 H 0 1 N N N N N N -26.029 -19.314 -6.722 5.159 -3.137 1.868 H20 A1BBD 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BBD C04 C02 SING N N 1 A1BBD C04 N01 SING N N 2 A1BBD O01 C01 SING N N 3 A1BBD C02 C01 SING N N 4 A1BBD C02 C03 SING N N 5 A1BBD N01 C05 SING N N 6 A1BBD N01 C12 SING N N 7 A1BBD C05 C06 SING N N 8 A1BBD O03 P01 DOUB N N 9 A1BBD O02 C03 SING N N 10 A1BBD O02 P01 SING N N 11 A1BBD C01 C12 SING N N 12 A1BBD P01 O04 SING N N 13 A1BBD P01 O05 SING N N 14 A1BBD C06 C11 SING N N 15 A1BBD C06 C07 DOUB N N 16 A1BBD C11 C09 DOUB N N 17 A1BBD O07 C10 SING N N 18 A1BBD C07 N02 SING N N 19 A1BBD C09 C10 SING N N 20 A1BBD C09 C08 SING N N 21 A1BBD N02 C08 SING N N 22 A1BBD C08 O06 DOUB N N 23 A1BBD C12 H1 SING N N 24 A1BBD C12 H2 SING N N 25 A1BBD C11 H3 SING N N 26 A1BBD C10 H4 SING N N 27 A1BBD C10 H5 SING N N 28 A1BBD C01 H6 SING N N 29 A1BBD C02 H7 SING N N 30 A1BBD C03 H8 SING N N 31 A1BBD C03 H9 SING N N 32 A1BBD C04 H10 SING N N 33 A1BBD C04 H11 SING N N 34 A1BBD C05 H12 SING N N 35 A1BBD C05 H13 SING N N 36 A1BBD C07 H15 SING N N 37 A1BBD O01 H17 SING N N 38 A1BBD O04 H18 SING N N 39 A1BBD O05 H19 SING N N 40 A1BBD O07 H20 SING N N 41 A1BBD N02 H14 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BBD SMILES ACDLabs 14.52 "O=P(O)(O)OCC1CN(CC2=CNC(=O)C(CO)=C2)CC1O" A1BBD InChI InChI 1.06 "InChI=1S/C12H19N2O7P/c15-6-9-1-8(2-13-12(9)17)3-14-4-10(11(16)5-14)7-21-22(18,19)20/h1-2,10-11,15-16H,3-7H2,(H,13,17)(H2,18,19,20)/t10-,11+/m1/s1" A1BBD InChIKey InChI 1.06 SCJDKIAFOJPYRJ-MNOVXSKESA-N A1BBD SMILES_CANONICAL CACTVS 3.385 "OCC1=CC(=CNC1=O)CN2C[C@H](O)[C@@H](CO[P](O)(O)=O)C2" A1BBD SMILES CACTVS 3.385 "OCC1=CC(=CNC1=O)CN2C[CH](O)[CH](CO[P](O)(O)=O)C2" A1BBD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1[C@@H]([C@H](CN1CC2=CNC(=O)C(=C2)CO)O)COP(=O)(O)O" A1BBD SMILES "OpenEye OEToolkits" 3.1.0.0 "C1C(C(CN1CC2=CNC(=O)C(=C2)CO)O)COP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BBD "SYSTEMATIC NAME" ACDLabs 14.52 "[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)-6-oxo-1,6-dihydropyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate" A1BBD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(3~{R},4~{R})-1-[[5-(hydroxymethyl)-6-oxidanylidene-1~{H}-pyridin-3-yl]methyl]-4-oxidanyl-pyrrolidin-3-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BBD "Create component" 2024-09-29 RCSB A1BBD "Other modification" 2024-10-09 RCSB A1BBD "Initial release" 2025-02-05 RCSB #