data_A1BBF # _chem_comp.id A1BBF _chem_comp.name "[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)pyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-29 _chem_comp.pdbx_modified_date 2025-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.263 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BBF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DA5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BBF C11 C1 C 0 1 Y N N N N N -27.843 -14.153 -6.423 -3.224 2.103 -0.171 C11 A1BBF 1 A1BBF C10 C2 C 0 1 Y N N N N N -27.710 -15.993 -5.000 -5.278 1.350 -0.893 C10 A1BBF 2 A1BBF C01 C3 C 0 1 N N R N N N -23.972 -13.229 -8.892 0.421 -1.803 -0.568 C01 A1BBF 3 A1BBF C02 C4 C 0 1 N N R N N N -23.885 -14.499 -9.489 1.435 -1.086 0.353 C02 A1BBF 4 A1BBF C03 C5 C 0 1 N N N N N N -23.045 -15.488 -8.571 2.671 -0.664 -0.444 C03 A1BBF 5 A1BBF C04 C6 C 0 1 N N N N N N -25.267 -15.084 -9.595 0.690 0.155 0.881 C04 A1BBF 6 A1BBF C05 C7 C 0 1 N N N N N N -27.258 -14.321 -8.870 -1.659 0.692 1.189 C05 A1BBF 7 A1BBF C06 C8 C 0 1 Y N N N N N -27.446 -14.956 -7.488 -2.958 0.899 0.453 C06 A1BBF 8 A1BBF C07 C9 C 0 1 Y N N N N N -27.169 -16.279 -7.282 -3.901 -0.115 0.394 C07 A1BBF 9 A1BBF C08 C10 C 0 1 Y N N N N N -27.297 -16.808 -6.041 -5.082 0.121 -0.294 C08 A1BBF 10 A1BBF C09 C11 C 0 1 N N N N N N -26.991 -18.286 -5.775 -6.139 -0.950 -0.385 C09 A1BBF 11 A1BBF C12 C12 C 0 1 N N N N N N -25.443 -12.890 -8.719 -0.943 -1.271 -0.063 C12 A1BBF 12 A1BBF N01 N1 N 0 1 N N N N N N -26.081 -14.200 -8.819 -0.654 0.149 0.265 N01 A1BBF 13 A1BBF N02 N2 N 0 1 Y N N N N N -27.979 -14.680 -5.181 -4.358 2.292 -0.817 N02 A1BBF 14 A1BBF O01 O1 O 0 1 N N N N N N -23.348 -12.273 -9.805 0.502 -3.221 -0.407 O01 A1BBF 15 A1BBF O02 O2 O 0 1 N N N N N N -23.216 -16.784 -9.050 3.643 -0.109 0.444 O02 A1BBF 16 A1BBF O03 O3 O 0 1 N N N N N N -21.254 -17.738 -7.650 4.852 1.719 -1.009 O03 A1BBF 17 A1BBF O04 O4 O 0 1 N N N N N N -23.365 -18.232 -6.878 5.956 0.870 1.221 O04 A1BBF 18 A1BBF O05 O5 O 0 1 N N N N N N -22.524 -19.278 -8.822 5.775 -0.622 -0.807 O05 A1BBF 19 A1BBF O06 O6 O 0 1 N N N N N N -25.892 -18.731 -6.527 -7.039 -0.826 0.717 O06 A1BBF 20 A1BBF P01 P1 P 0 1 N N N N N N -22.614 -18.002 -8.114 5.072 0.441 -0.054 P01 A1BBF 21 A1BBF H1 H1 H 0 1 N N N N N N -28.044 -13.105 -6.587 -2.496 2.900 -0.127 H1 A1BBF 22 A1BBF H2 H2 H 0 1 N N N N N N -27.821 -16.419 -4.014 -6.194 1.542 -1.431 H2 A1BBF 23 A1BBF H3 H3 H 0 1 N N N N N N -23.470 -13.211 -7.913 0.582 -1.525 -1.609 H3 A1BBF 24 A1BBF H4 H4 H 0 1 N N N N N N -23.418 -14.448 -10.483 1.722 -1.736 1.179 H4 A1BBF 25 A1BBF H5 H5 H 0 1 N N N N N N -21.980 -15.215 -8.609 3.093 -1.534 -0.947 H5 A1BBF 26 A1BBF H6 H6 H 0 1 N N N N N N -23.403 -15.425 -7.533 2.387 0.083 -1.186 H6 A1BBF 27 A1BBF H7 H7 H 0 1 N N N N N N -25.603 -15.105 -10.642 0.602 0.101 1.966 H7 A1BBF 28 A1BBF H8 H8 H 0 1 N N N N N N -25.293 -16.103 -9.181 1.226 1.060 0.594 H8 A1BBF 29 A1BBF H9 H9 H 0 1 N N N N N N -27.776 -13.355 -8.962 -1.310 1.645 1.586 H9 A1BBF 30 A1BBF H10 H10 H 0 1 N N N N N N -27.577 -14.987 -9.685 -1.814 -0.009 2.009 H10 A1BBF 31 A1BBF H11 H11 H 0 1 N N N N N N -26.849 -16.900 -8.106 -3.721 -1.066 0.873 H11 A1BBF 32 A1BBF H12 H12 H 0 1 N N N N N N -27.873 -18.887 -6.042 -6.690 -0.837 -1.319 H12 A1BBF 33 A1BBF H13 H13 H 0 1 N N N N N N -26.768 -18.417 -4.706 -5.665 -1.931 -0.359 H13 A1BBF 34 A1BBF H14 H14 H 0 1 N N N N N N -25.632 -12.429 -7.738 -1.697 -1.339 -0.847 H14 A1BBF 35 A1BBF H15 H15 H 0 1 N N N N N N -25.792 -12.216 -9.515 -1.264 -1.815 0.826 H15 A1BBF 36 A1BBF H17 H17 H 0 1 N N N N N N -23.391 -11.402 -9.429 -0.165 -3.712 -0.907 H17 A1BBF 37 A1BBF H18 H18 H 0 1 N N N N N N -20.683 -18.446 -7.923 4.397 2.456 -0.581 H18 A1BBF 38 A1BBF H19 H19 H 0 1 N N N N N N -23.616 -19.147 -6.825 6.832 1.211 0.995 H19 A1BBF 39 A1BBF H20 H20 H 0 1 N N N N N N -25.730 -19.648 -6.339 -7.747 -1.484 0.723 H20 A1BBF 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BBF O01 C01 SING N N 1 A1BBF C04 C02 SING N N 2 A1BBF C04 N01 SING N N 3 A1BBF C02 C01 SING N N 4 A1BBF C02 C03 SING N N 5 A1BBF O02 C03 SING N N 6 A1BBF O02 P01 SING N N 7 A1BBF C01 C12 SING N N 8 A1BBF C05 N01 SING N N 9 A1BBF C05 C06 SING N N 10 A1BBF O05 P01 DOUB N N 11 A1BBF N01 C12 SING N N 12 A1BBF P01 O03 SING N N 13 A1BBF P01 O04 SING N N 14 A1BBF C06 C07 DOUB Y N 15 A1BBF C06 C11 SING Y N 16 A1BBF C07 C08 SING Y N 17 A1BBF O06 C09 SING N N 18 A1BBF C11 N02 DOUB Y N 19 A1BBF C08 C09 SING N N 20 A1BBF C08 C10 DOUB Y N 21 A1BBF N02 C10 SING Y N 22 A1BBF C11 H1 SING N N 23 A1BBF C10 H2 SING N N 24 A1BBF C01 H3 SING N N 25 A1BBF C02 H4 SING N N 26 A1BBF C03 H5 SING N N 27 A1BBF C03 H6 SING N N 28 A1BBF C04 H7 SING N N 29 A1BBF C04 H8 SING N N 30 A1BBF C05 H9 SING N N 31 A1BBF C05 H10 SING N N 32 A1BBF C07 H11 SING N N 33 A1BBF C09 H12 SING N N 34 A1BBF C09 H13 SING N N 35 A1BBF C12 H14 SING N N 36 A1BBF C12 H15 SING N N 37 A1BBF O01 H17 SING N N 38 A1BBF O03 H18 SING N N 39 A1BBF O04 H19 SING N N 40 A1BBF O06 H20 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BBF SMILES ACDLabs 14.52 "O=P(O)(O)OCC1CN(Cc2cncc(CO)c2)CC1O" A1BBF InChI InChI 1.06 "InChI=1S/C12H19N2O6P/c15-7-10-1-9(2-13-3-10)4-14-5-11(12(16)6-14)8-20-21(17,18)19/h1-3,11-12,15-16H,4-8H2,(H2,17,18,19)/t11-,12+/m1/s1" A1BBF InChIKey InChI 1.06 SZNYLPNTDKRZQR-NEPJUHHUSA-N A1BBF SMILES_CANONICAL CACTVS 3.385 "OCc1cncc(CN2C[C@H](O)[C@@H](CO[P](O)(O)=O)C2)c1" A1BBF SMILES CACTVS 3.385 "OCc1cncc(CN2C[CH](O)[CH](CO[P](O)(O)=O)C2)c1" A1BBF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cncc1CO)CN2C[C@@H]([C@H](C2)O)COP(=O)(O)O" A1BBF SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cncc1CO)CN2CC(C(C2)O)COP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BBF "SYSTEMATIC NAME" ACDLabs 14.52 "[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)pyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate" A1BBF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R},4~{R})-1-[[5-(hydroxymethyl)pyridin-3-yl]methyl]-4-oxidanyl-pyrrolidin-3-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BBF "Create component" 2024-09-29 RCSB A1BBF "Initial release" 2025-02-05 RCSB #