data_A1BBK # _chem_comp.id A1BBK _chem_comp.name "(1R,4S,5R)-4-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}-2-oxabicyclo[3.1.1]heptan-4-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-30 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BBK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HFJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BBK N2 N1 N 0 1 Y N N N N N 15.566 3.630 5.911 -4.842 0.888 -0.177 N2 A1BBK 1 A1BBK C3 C1 C 0 1 Y N N N N N 15.112 1.265 3.171 -1.560 -0.444 0.083 C3 A1BBK 2 A1BBK C6 C2 C 0 1 Y N N N N N 15.730 4.526 4.825 -4.181 2.083 -0.058 C6 A1BBK 3 A1BBK C9 C3 C 0 1 N N N N N N 13.004 -1.431 -0.320 2.260 0.999 -0.687 C9 A1BBK 4 A1BBK C12 C4 C 0 1 N N N N N N 12.478 0.732 0.908 3.376 -0.976 0.318 C12 A1BBK 5 A1BBK C1 C5 C 0 1 N N S N N N 13.349 -0.539 0.958 2.154 -0.043 0.438 C1 A1BBK 6 A1BBK C10 C6 C 0 1 N N N N N N 11.398 0.266 -0.891 4.574 0.386 -0.724 C10 A1BBK 7 A1BBK C11 C7 C 0 1 N N N N N N 11.048 0.218 0.621 4.668 -0.230 0.709 C11 A1BBK 8 A1BBK C13 C8 C 0 1 N N N N N N 12.558 1.284 -0.564 3.920 -0.952 -1.128 C13 A1BBK 9 A1BBK C2 C9 C 0 1 N N N N N N 14.841 -0.022 1.009 0.865 -0.851 0.279 C2 A1BBK 10 A1BBK C4 C10 C 0 1 Y N N N N N 15.346 2.489 3.890 -2.668 0.415 0.011 C4 A1BBK 11 A1BBK C5 C11 C 0 1 Y N N N N N 15.611 3.861 3.615 -2.861 1.863 0.060 C5 A1BBK 12 A1BBK C7 C12 C 0 1 Y N N N N N 15.325 2.386 5.302 -3.950 -0.148 -0.133 C7 A1BBK 13 A1BBK C8 C13 C 0 1 Y N N N N N 14.911 0.184 5.240 -2.992 -2.240 -0.142 C8 A1BBK 14 A1BBK N1 N2 N 0 1 N N N N N N 15.100 1.205 1.774 -0.280 0.061 0.225 N1 A1BBK 15 A1BBK N3 N3 N 0 1 Y N N N N N 15.103 1.250 6.024 -4.059 -1.474 -0.205 N3 A1BBK 16 A1BBK N4 N4 N 0 1 Y N N N N N 14.894 0.119 3.869 -1.771 -1.754 -0.006 N4 A1BBK 17 A1BBK O1 O1 O 0 1 N N N N N N 13.056 -1.202 2.180 2.165 0.611 1.708 O1 A1BBK 18 A1BBK O2 O2 O 0 1 N N N N N N 11.999 -0.954 -1.202 3.616 1.458 -0.760 O2 A1BBK 19 A1BBK H7 H1 H 0 1 N N N N N N 15.611 3.836 6.889 -5.802 0.791 -0.275 H7 A1BBK 20 A1BBK H6 H2 H 0 1 N N N N N N 15.922 5.584 4.927 -4.651 3.055 -0.058 H6 A1BBK 21 A1BBK H10 H3 H 0 1 N N N N N N 12.681 -2.417 0.044 1.976 0.543 -1.636 H10 A1BBK 22 A1BBK H9 H4 H 0 1 N N N N N N 13.930 -1.541 -0.904 1.598 1.838 -0.472 H9 A1BBK 23 A1BBK H14 H5 H 0 1 N N N N N N 12.600 1.463 1.721 3.242 -1.962 0.761 H14 A1BBK 24 A1BBK H11 H6 H 0 1 N N N N N N 10.607 0.652 -1.551 5.525 0.608 -1.206 H11 A1BBK 25 A1BBK H13 H7 H 0 1 N N N N N N 10.245 0.905 0.927 4.540 0.498 1.511 H13 A1BBK 26 A1BBK H12 H8 H 0 1 N N N N N N 10.837 -0.789 1.010 5.530 -0.880 0.854 H12 A1BBK 27 A1BBK H15 H9 H 0 1 N N N N N N 13.508 1.088 -1.083 4.636 -1.746 -1.341 H15 A1BBK 28 A1BBK H16 H10 H 0 1 N N N N N N 12.291 2.345 -0.677 3.149 -0.854 -1.892 H16 A1BBK 29 A1BBK H2 H11 H 0 1 N N N N N N 15.454 -0.822 1.450 0.911 -1.431 -0.643 H2 A1BBK 30 A1BBK H3 H12 H 0 1 N N N N N N 15.164 0.159 -0.027 0.752 -1.526 1.127 H3 A1BBK 31 A1BBK H5 H13 H 0 1 N N N N N N 15.703 4.305 2.635 -2.090 2.612 0.165 H5 A1BBK 32 A1BBK H8 H14 H 0 1 N N N N N N 14.747 -0.751 5.754 -3.119 -3.310 -0.203 H8 A1BBK 33 A1BBK H4 H15 H 0 1 N N N N N N 16.002 1.523 1.481 -0.141 1.018 0.289 H4 A1BBK 34 A1BBK H1 H16 H 0 1 N N N N N N 13.277 -0.635 2.909 1.439 1.237 1.835 H1 A1BBK 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BBK O2 C10 SING N N 1 A1BBK O2 C9 SING N N 2 A1BBK C10 C13 SING N N 3 A1BBK C10 C11 SING N N 4 A1BBK C13 C12 SING N N 5 A1BBK C9 C1 SING N N 6 A1BBK C11 C12 SING N N 7 A1BBK C12 C1 SING N N 8 A1BBK C1 C2 SING N N 9 A1BBK C1 O1 SING N N 10 A1BBK C2 N1 SING N N 11 A1BBK N1 C3 SING N N 12 A1BBK C3 N4 DOUB Y N 13 A1BBK C3 C4 SING Y N 14 A1BBK C5 C4 SING Y N 15 A1BBK C5 C6 DOUB Y N 16 A1BBK N4 C8 SING Y N 17 A1BBK C4 C7 DOUB Y N 18 A1BBK C6 N2 SING Y N 19 A1BBK C8 N3 DOUB Y N 20 A1BBK C7 N2 SING Y N 21 A1BBK C7 N3 SING Y N 22 A1BBK N2 H7 SING N N 23 A1BBK C6 H6 SING N N 24 A1BBK C9 H10 SING N N 25 A1BBK C9 H9 SING N N 26 A1BBK C12 H14 SING N N 27 A1BBK C10 H11 SING N N 28 A1BBK C11 H13 SING N N 29 A1BBK C11 H12 SING N N 30 A1BBK C13 H15 SING N N 31 A1BBK C13 H16 SING N N 32 A1BBK C2 H2 SING N N 33 A1BBK C2 H3 SING N N 34 A1BBK C5 H5 SING N N 35 A1BBK C8 H8 SING N N 36 A1BBK N1 H4 SING N N 37 A1BBK O1 H1 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BBK SMILES ACDLabs 14.52 "OC1(CNc2ncnc3[NH]ccc32)COC2CC1C2" A1BBK InChI InChI 1.06 "InChI=1S/C13H16N4O2/c18-13(6-19-9-3-8(13)4-9)5-15-12-10-1-2-14-11(10)16-7-17-12/h1-2,7-9,18H,3-6H2,(H2,14,15,16,17)/t8-,9+,13-/m0/s1" A1BBK InChIKey InChI 1.06 GFKKKQMMGGHAGZ-RWEMILLDSA-N A1BBK SMILES_CANONICAL CACTVS 3.385 "O[C@@]1(CNc2ncnc3[nH]ccc23)COC4CC1C4" A1BBK SMILES CACTVS 3.385 "O[C]1(CNc2ncnc3[nH]ccc23)COC4CC1C4" A1BBK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC[C@@]3(COC4CC3C4)O" A1BBK SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NCC3(COC4CC3C4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BBK "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,4S,5R)-4-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}-2-oxabicyclo[3.1.1]heptan-4-ol" A1BBK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(4~{S})-4-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]-2-oxabicyclo[3.1.1]heptan-4-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BBK "Create component" 2024-09-30 RCSB A1BBK "Initial release" 2025-06-11 RCSB #