data_A1BC6
#
_chem_comp.id A1BC6
_chem_comp.name "{[(3E)-4-{10-[(2S,3S,4R)-5-{[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-2,3,4-trihydroxypentyl]-7,8-dimethyl-2,4-dioxo-2,3,4,10-tetrahydrobenzo[g]pteridin-5(1H)-yl}but-3-en-2-ylidene]amino}acetic acid (non-preferred name)"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H42 N10 O17 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-10-14
_chem_comp.pdbx_modified_date 2025-01-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 912.691
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1BC6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9D7L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1BC6 PA P1 P 0 1 N N N N N N 16.809 28.058 44.093 -5.144 3.431 0.640 PA A1BC6 1
A1BC6 O1A O1 O 0 1 N N N N N N 16.574 29.442 44.750 -5.389 3.139 2.205 O1A A1BC6 2
A1BC6 O2A O2 O 0 1 N N N N N N 17.857 27.882 43.140 -5.583 4.807 0.321 O2A A1BC6 3
A1BC6 O5B O3 O 0 1 N N N N N N 15.641 27.397 43.459 -5.988 2.380 -0.240 O5B A1BC6 4
A1BC6 C5B C1 C 0 1 N N N N N N 15.681 26.331 42.525 -7.417 2.340 -0.246 C5B A1BC6 5
A1BC6 C4B C2 C 0 1 N N R N N N 14.273 25.775 42.379 -7.892 1.229 -1.185 C4B A1BC6 6
A1BC6 O4B O4 O 0 1 N N N N N N 13.418 26.621 41.629 -7.517 -0.053 -0.654 O4B A1BC6 7
A1BC6 C3B C3 C 0 1 N N S N N N 14.183 24.476 41.631 -9.429 1.254 -1.290 C3B A1BC6 8
A1BC6 O3B O5 O 0 1 N N N N N N 14.577 23.399 42.390 -9.834 1.472 -2.643 O3B A1BC6 9
A1BC6 C2B C4 C 0 1 N N R N N N 12.751 24.421 41.269 -9.865 -0.154 -0.815 C2B A1BC6 10
A1BC6 O2B O6 O 0 1 N N N N N N 11.975 24.036 42.347 -10.923 -0.662 -1.629 O2B A1BC6 11
A1BC6 C1B C5 C 0 1 N N R N N N 12.441 25.845 41.005 -8.564 -0.980 -1.013 C1B A1BC6 12
A1BC6 N9A N1 N 0 1 Y N N N N N 12.475 26.172 39.592 -8.552 -2.145 -0.124 N9A A1BC6 13
A1BC6 C8A C6 C 0 1 Y N N N N N 13.533 26.163 38.721 -7.963 -2.216 1.103 C8A A1BC6 14
A1BC6 N7A N2 N 0 1 Y N N N N N 13.110 26.559 37.506 -8.146 -3.398 1.615 N7A A1BC6 15
A1BC6 C5A C7 C 0 1 Y N N N N N 11.758 26.859 37.577 -8.861 -4.159 0.752 C5A A1BC6 16
A1BC6 C6A C8 C 0 1 Y N N N N N 10.804 27.325 36.667 -9.346 -5.478 0.764 C6A A1BC6 17
A1BC6 N6A N3 N 0 1 N N N N N N 11.181 27.589 35.305 -9.113 -6.308 1.846 N6A A1BC6 18
A1BC6 N1A N4 N 0 1 Y N N N N N 9.540 27.509 37.067 -10.034 -5.909 -0.288 N1A A1BC6 19
A1BC6 C2A C9 C 0 1 Y N N N N N 9.148 27.280 38.345 -10.261 -5.124 -1.326 C2A A1BC6 20
A1BC6 N3A N5 N 0 1 Y N N N N N 10.055 26.829 39.260 -9.827 -3.883 -1.381 N3A A1BC6 21
A1BC6 C4A C10 C 0 1 Y N N N N N 11.332 26.630 38.917 -9.135 -3.362 -0.372 C4A A1BC6 22
A1BC6 N1 N6 N 0 1 N N N N N N 12.347 18.398 46.729 6.884 2.746 -1.517 N1 A1BC6 23
A1BC6 C2 C11 C 0 1 N N N N N N 11.057 17.843 46.668 7.563 2.783 -2.679 C2 A1BC6 24
A1BC6 O2 O7 O 0 1 N N N N N N 10.291 18.118 45.604 7.548 3.801 -3.345 O2 A1BC6 25
A1BC6 N3 N7 N 0 1 N N N N N N 10.537 16.995 47.641 8.257 1.719 -3.118 N3 A1BC6 26
A1BC6 C4 C12 C 0 1 N N N N N N 11.292 16.668 48.747 8.295 0.576 -2.403 C4 A1BC6 27
A1BC6 O4 O8 O 0 1 N N N N N N 10.716 15.845 49.639 8.927 -0.385 -2.808 O4 A1BC6 28
A1BC6 C4X C13 C 0 1 N N N N N N 12.658 17.220 48.851 7.598 0.506 -1.185 C4X A1BC6 29
A1BC6 N5 N8 N 0 1 N N N N N N 13.567 16.797 49.897 7.616 -0.673 -0.408 N5 A1BC6 30
A1BC6 C5X C14 C 0 1 Y N N N N N 14.500 17.830 50.245 7.153 -0.613 0.916 C5X A1BC6 31
A1BC6 C6 C15 C 0 1 Y N N N N N 14.963 17.922 51.646 7.398 -1.651 1.798 C6 A1BC6 32
A1BC6 C7 C16 C 0 1 Y N N N N N 15.834 18.965 52.001 6.932 -1.571 3.099 C7 A1BC6 33
A1BC6 C7M C17 C 0 1 N N N N N N 16.320 19.063 53.420 7.197 -2.700 4.062 C7M A1BC6 34
A1BC6 C8 C18 C 0 1 Y N N N N N 16.261 19.914 51.031 6.226 -0.460 3.519 C8 A1BC6 35
A1BC6 C8M C19 C 0 1 N N N N N N 17.199 21.031 51.361 5.724 -0.382 4.938 C8M A1BC6 36
A1BC6 C9 C20 C 0 1 Y N N N N N 15.814 19.824 49.688 5.979 0.582 2.642 C9 A1BC6 37
A1BC6 C9A C21 C 0 1 Y N N N N N 14.897 18.735 49.332 6.439 0.510 1.338 C9A A1BC6 38
A1BC6 N10 N9 N 0 1 N N N N N N 14.376 18.671 47.988 6.197 1.557 0.437 N10 A1BC6 39
A1BC6 C10 C22 C 0 1 N N N N N N 13.128 18.049 47.873 6.889 1.606 -0.750 C10 A1BC6 40
A1BC6 "C1'" C23 C 0 1 N N N N N N 14.979 19.384 46.882 5.213 2.593 0.759 "C1'" A1BC6 41
A1BC6 "C2'" C24 C 0 1 N N S N N N 14.473 20.802 46.807 3.817 2.113 0.356 "C2'" A1BC6 42
A1BC6 "O2'" O9 O 0 1 N N N N N N 13.225 20.870 46.198 3.792 1.847 -1.048 "O2'" A1BC6 43
A1BC6 "C3'" C25 C 0 1 N N S N N N 15.483 21.616 46.041 2.789 3.196 0.688 "C3'" A1BC6 44
A1BC6 "O3'" O10 O 0 1 N N N N N N 16.696 21.542 46.725 2.814 3.462 2.092 "O3'" A1BC6 45
A1BC6 "C4'" C26 C 0 1 N N R N N N 14.997 23.045 45.947 1.394 2.716 0.284 "C4'" A1BC6 46
A1BC6 "O4'" O11 O 0 1 N N N N N N 14.067 23.127 44.907 1.369 2.450 -1.120 "O4'" A1BC6 47
A1BC6 "C5'" C27 C 0 1 N N N N N N 16.124 24.026 45.733 0.366 3.800 0.617 "C5'" A1BC6 48
A1BC6 "O5'" O12 O 0 1 N N N N N N 15.637 25.321 45.977 -0.949 3.308 0.348 "O5'" A1BC6 49
A1BC6 P P2 P 0 1 N N N N N N 16.715 26.348 46.421 -2.278 4.185 0.584 P A1BC6 50
A1BC6 O1P O13 O 0 1 N N N N N N 17.894 25.695 47.225 -2.277 5.443 -0.421 O1P A1BC6 51
A1BC6 O2P O14 O 0 1 N N N N N N 15.856 27.444 47.154 -2.307 4.670 1.982 O2P A1BC6 52
A1BC6 O3P O15 O 0 1 N N N N N N 17.289 26.993 45.042 -3.577 3.276 0.304 O3P A1BC6 53
A1BC6 C01 C28 C 0 1 N N N N N N 15.521 12.837 48.912 9.369 -4.217 -1.840 C01 A1BC6 54
A1BC6 C02 C29 C 0 1 N N N N N N 14.031 13.142 48.821 8.184 -4.239 -0.909 C02 A1BC6 55
A1BC6 C04 C30 C 0 1 N N N N N N 13.484 14.531 48.945 7.623 -3.026 -0.452 C04 A1BC6 56
A1BC6 C05 C31 C 0 1 N N N N N N 14.081 15.479 49.710 8.076 -1.848 -0.934 C05 A1BC6 57
A1BC6 H1 H1 H 0 1 N N N N N N 17.208 30.064 44.414 -5.123 2.253 2.486 H1 A1BC6 58
A1BC6 H2 H2 H 0 1 N N N N N N 16.357 25.543 42.888 -7.779 2.143 0.763 H2 A1BC6 59
A1BC6 H3 H3 H 0 1 N N N N N N 16.038 26.701 41.553 -7.805 3.298 -0.591 H3 A1BC6 60
A1BC6 H4 H4 H 0 1 N N N N N N 13.855 25.627 43.386 -7.451 1.364 -2.172 H4 A1BC6 61
A1BC6 H5 H5 H 0 1 N N N N N N 14.787 24.549 40.714 -9.844 2.024 -0.639 H5 A1BC6 62
A1BC6 H6 H6 H 0 1 N N N N N N 15.501 23.478 42.597 -10.793 1.497 -2.767 H6 A1BC6 63
A1BC6 H7 H7 H 0 1 N N N N N N 12.585 23.801 40.376 -10.158 -0.136 0.235 H7 A1BC6 64
A1BC6 H8 H8 H 0 1 N N N N N N 12.145 23.124 42.550 -11.727 -0.127 -1.608 H8 A1BC6 65
A1BC6 H9 H9 H 0 1 N N N N N N 11.447 26.080 41.413 -8.461 -1.289 -2.054 H9 A1BC6 66
A1BC6 H10 H10 H 0 1 N N N N N N 14.546 25.883 38.970 -7.425 -1.411 1.580 H10 A1BC6 67
A1BC6 H11 H11 H 0 1 N N N N N N 10.382 27.902 34.792 -9.453 -7.216 1.843 H11 A1BC6 68
A1BC6 H12 H12 H 0 1 N N N N N N 11.887 28.297 35.286 -8.610 -5.981 2.609 H12 A1BC6 69
A1BC6 H13 H13 H 0 1 N N N N N N 8.123 27.454 38.637 -10.824 -5.515 -2.160 H13 A1BC6 70
A1BC6 H14 H14 H 0 1 N N N N N N 12.698 19.002 46.013 6.393 3.527 -1.219 H14 A1BC6 71
A1BC6 H15 H15 H 0 1 N N N N N N 9.615 16.622 47.538 8.737 1.774 -3.960 H15 A1BC6 72
A1BC6 H16 H16 H 0 1 N N N N N N 14.638 17.201 52.382 7.949 -2.520 1.472 H16 A1BC6 73
A1BC6 H17 H17 H 0 1 N N N N N N 15.628 19.688 54.003 8.139 -2.522 4.580 H17 A1BC6 74
A1BC6 H18 H18 H 0 1 N N N N N N 16.366 18.057 53.862 6.387 -2.755 4.789 H18 A1BC6 75
A1BC6 H19 H19 H 0 1 N N N N N N 17.323 19.515 53.434 7.257 -3.640 3.512 H19 A1BC6 76
A1BC6 H20 H20 H 0 1 N N N N N N 16.623 21.914 51.675 6.482 0.087 5.566 H20 A1BC6 77
A1BC6 H21 H21 H 0 1 N N N N N N 17.866 20.720 52.178 4.810 0.211 4.967 H21 A1BC6 78
A1BC6 H22 H22 H 0 1 N N N N N N 17.798 21.281 50.473 5.518 -1.386 5.306 H22 A1BC6 79
A1BC6 H23 H23 H 0 1 N N N N N N 16.140 20.538 48.947 5.426 1.449 2.973 H23 A1BC6 80
A1BC6 H24 H24 H 0 1 N N N N N N 14.733 18.865 45.944 5.233 2.792 1.830 H24 A1BC6 81
A1BC6 H25 H25 H 0 1 N N N N N N 16.071 19.399 47.017 5.455 3.506 0.215 H25 A1BC6 82
A1BC6 H26 H26 H 0 1 N N N N N N 14.412 21.201 47.830 3.574 1.202 0.902 H26 A1BC6 83
A1BC6 H27 H27 H 0 1 N N N N N N 12.602 20.352 46.694 3.925 2.630 -1.599 H27 A1BC6 84
A1BC6 H28 H28 H 0 1 N N N N N N 15.583 21.204 45.026 3.032 4.107 0.141 H28 A1BC6 85
A1BC6 H29 H29 H 0 1 N N N N N N 16.980 20.636 46.771 2.607 2.694 2.641 H29 A1BC6 86
A1BC6 H30 H30 H 0 1 N N N N N N 14.505 23.297 46.898 1.151 1.805 0.831 H30 A1BC6 87
A1BC6 H31 H31 H 0 1 N N N N N N 13.366 22.504 45.058 1.576 3.218 -1.669 H31 A1BC6 88
A1BC6 H32 H32 H 0 1 N N N N N N 16.948 23.802 46.426 0.446 4.066 1.670 H32 A1BC6 89
A1BC6 H33 H33 H 0 1 N N N N N N 16.487 23.955 44.697 0.556 4.681 0.004 H33 A1BC6 90
A1BC6 H34 H34 H 0 1 N N N N N N 17.931 26.072 48.096 -2.258 5.199 -1.356 H34 A1BC6 91
A1BC6 H35 H35 H 0 1 N N N N N N 15.682 11.755 48.793 10.290 -4.222 -1.257 H35 A1BC6 92
A1BC6 H36 H36 H 0 1 N N N N N N 16.055 13.377 48.116 9.342 -5.096 -2.484 H36 A1BC6 93
A1BC6 H37 H37 H 0 1 N N N N N N 15.902 13.158 49.893 9.333 -3.316 -2.453 H37 A1BC6 94
A1BC6 H40 H40 H 0 1 N N N N N N 12.583 14.787 48.407 6.832 -3.041 0.283 H40 A1BC6 95
A1BC6 H41 H41 H 0 1 N N N N N N 15.003 15.220 50.209 8.800 -1.835 -1.735 H41 A1BC6 96
A1BC6 N N N 0 1 N Y N N N N ? ? ? 7.678 -5.376 -0.526 N A1BC6 97
A1BC6 CA CA C 0 1 N Y N N N N ? ? ? 6.438 -5.401 0.253 CA A1BC6 98
A1BC6 C C C 0 1 N Y N N N N ? ? ? 5.377 -6.148 -0.514 C A1BC6 99
A1BC6 O O O 0 1 N Y N N N N ? ? ? 5.631 -6.612 -1.600 O A1BC6 100
A1BC6 OXT OXT O 0 1 N Y N N N N ? ? ? 4.150 -6.297 0.009 OXT A1BC6 101
A1BC6 HA2 HA2 H 0 1 N Y N N N N ? ? ? 6.617 -5.900 1.205 HA2 A1BC6 102
A1BC6 HA3 HA3 H 0 1 N Y N N N N ? ? ? 6.103 -4.379 0.435 HA3 A1BC6 103
A1BC6 HXT HXT H 0 1 N Y N N N N ? ? ? 3.503 -6.784 -0.520 HXT A1BC6 104
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1BC6 N6A C6A SING N N 1
A1BC6 C6A N1A DOUB Y N 2
A1BC6 C6A C5A SING Y N 3
A1BC6 N1A C2A SING Y N 4
A1BC6 N7A C5A SING Y N 5
A1BC6 N7A C8A DOUB Y N 6
A1BC6 C5A C4A DOUB Y N 7
A1BC6 C2A N3A DOUB Y N 8
A1BC6 C8A N9A SING Y N 9
A1BC6 C4A N3A SING Y N 10
A1BC6 C4A N9A SING Y N 11
A1BC6 N9A C1B SING N N 12
A1BC6 C1B C2B SING N N 13
A1BC6 C1B O4B SING N N 14
A1BC6 C2B C3B SING N N 15
A1BC6 C2B O2B SING N N 16
A1BC6 O4B C4B SING N N 17
A1BC6 C3B C4B SING N N 18
A1BC6 C3B O3B SING N N 19
A1BC6 C4B C5B SING N N 20
A1BC6 C5B O5B SING N N 21
A1BC6 O2A PA DOUB N N 22
A1BC6 O5B PA SING N N 23
A1BC6 PA O1A SING N N 24
A1BC6 PA O3P SING N N 25
A1BC6 "O4'" "C4'" SING N N 26
A1BC6 O3P P SING N N 27
A1BC6 O2 C2 DOUB N N 28
A1BC6 "C5'" "C4'" SING N N 29
A1BC6 "C5'" "O5'" SING N N 30
A1BC6 "C4'" "C3'" SING N N 31
A1BC6 "O5'" P SING N N 32
A1BC6 "C3'" "O3'" SING N N 33
A1BC6 "C3'" "C2'" SING N N 34
A1BC6 "O2'" "C2'" SING N N 35
A1BC6 P O2P DOUB N N 36
A1BC6 P O1P SING N N 37
A1BC6 C2 N1 SING N N 38
A1BC6 C2 N3 SING N N 39
A1BC6 N1 C10 SING N N 40
A1BC6 "C2'" "C1'" SING N N 41
A1BC6 "C1'" N10 SING N N 42
A1BC6 N3 C4 SING N N 43
A1BC6 C10 N10 SING N N 44
A1BC6 C10 C4X DOUB N N 45
A1BC6 N10 C9A SING N N 46
A1BC6 C4 C4X SING N N 47
A1BC6 C4 O4 DOUB N N 48
A1BC6 C02 C01 SING N N 49
A1BC6 C02 C04 SING N N 50
A1BC6 C4X N5 SING N N 51
A1BC6 C04 C05 DOUB N E 52
A1BC6 C9A C9 DOUB Y N 53
A1BC6 C9A C5X SING Y N 54
A1BC6 C9 C8 SING Y N 55
A1BC6 C05 N5 SING N N 56
A1BC6 N5 C5X SING N N 57
A1BC6 C5X C6 DOUB Y N 58
A1BC6 C8 C8M SING N N 59
A1BC6 C8 C7 DOUB Y N 60
A1BC6 C6 C7 SING Y N 61
A1BC6 C7 C7M SING N N 62
A1BC6 O1A H1 SING N N 63
A1BC6 C5B H2 SING N N 64
A1BC6 C5B H3 SING N N 65
A1BC6 C4B H4 SING N N 66
A1BC6 C3B H5 SING N N 67
A1BC6 O3B H6 SING N N 68
A1BC6 C2B H7 SING N N 69
A1BC6 O2B H8 SING N N 70
A1BC6 C1B H9 SING N N 71
A1BC6 C8A H10 SING N N 72
A1BC6 N6A H11 SING N N 73
A1BC6 N6A H12 SING N N 74
A1BC6 C2A H13 SING N N 75
A1BC6 N1 H14 SING N N 76
A1BC6 N3 H15 SING N N 77
A1BC6 C6 H16 SING N N 78
A1BC6 C7M H17 SING N N 79
A1BC6 C7M H18 SING N N 80
A1BC6 C7M H19 SING N N 81
A1BC6 C8M H20 SING N N 82
A1BC6 C8M H21 SING N N 83
A1BC6 C8M H22 SING N N 84
A1BC6 C9 H23 SING N N 85
A1BC6 "C1'" H24 SING N N 86
A1BC6 "C1'" H25 SING N N 87
A1BC6 "C2'" H26 SING N N 88
A1BC6 "O2'" H27 SING N N 89
A1BC6 "C3'" H28 SING N N 90
A1BC6 "O3'" H29 SING N N 91
A1BC6 "C4'" H30 SING N N 92
A1BC6 "O4'" H31 SING N N 93
A1BC6 "C5'" H32 SING N N 94
A1BC6 "C5'" H33 SING N N 95
A1BC6 O1P H34 SING N N 96
A1BC6 C01 H35 SING N N 97
A1BC6 C01 H36 SING N N 98
A1BC6 C01 H37 SING N N 99
A1BC6 C04 H40 SING N N 100
A1BC6 C05 H41 SING N N 101
A1BC6 C02 N DOUB N N 102
A1BC6 N CA SING N N 103
A1BC6 CA C SING N N 104
A1BC6 C O DOUB N N 105
A1BC6 C OXT SING N N 106
A1BC6 CA HA2 SING N N 107
A1BC6 CA HA3 SING N N 108
A1BC6 OXT HXT SING N N 109
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1BC6 SMILES ACDLabs 14.52 "O=C(O)C\N=C(\C)/C=C/N1c2cc(C)c(C)cc2N(CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C=2NC(=O)NC(=O)C1=2"
A1BC6 InChI InChI 1.06 "InChI=1S/C33H42N10O17P2/c1-14-6-17-18(7-15(14)2)42(30-24(31(51)40-33(52)39-30)41(17)5-4-16(3)35-8-22(46)47)9-19(44)25(48)20(45)10-57-61(53,54)60-62(55,56)58-11-21-26(49)27(50)32(59-21)43-13-38-23-28(34)36-12-37-29(23)43/h4-7,12-13,19-21,25-27,32,44-45,48-50H,8-11H2,1-3H3,(H,46,47)(H,53,54)(H,55,56)(H2,34,36,37)(H2,39,40,51,52)/b5-4+,35-16?/t19-,20+,21+,25-,26+,27+,32+/m0/s1"
A1BC6 InChIKey InChI 1.06 HREBZDJNCRSKBG-LHFUTWENSA-N
A1BC6 SMILES_CANONICAL CACTVS 3.385 "CC(\C=C\N1c2cc(C)c(C)cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=C1C(=O)NC(=O)N6)=NCC(O)=O"
A1BC6 SMILES CACTVS 3.385 "CC(C=CN1c2cc(C)c(C)cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=C1C(=O)NC(=O)N6)=NCC(O)=O"
A1BC6 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cc2c(cc1C)N(C3=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O)NC(=O)NC3=O)/C=C/C(=NCC(=O)O)C"
A1BC6 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cc2c(cc1C)N(C3=C(N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O)NC(=O)NC3=O)C=CC(=NCC(=O)O)C"
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loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1BC6 "SYSTEMATIC NAME" ACDLabs 14.52 "{[(3E)-4-{10-[(2S,3S,4R)-5-{[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-2,3,4-trihydroxypentyl]-7,8-dimethyl-2,4-dioxo-2,3,4,10-tetrahydrobenzo[g]pteridin-5(1H)-yl}but-3-en-2-ylidene]amino}acetic acid (non-preferred name)"
A1BC6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[[(~{E})-4-[10-[(2~{S},3~{S},4~{R})-5-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2,3,4-tris(oxidanyl)pentyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-5-yl]but-3-en-2-ylidene]amino]ethanoic acid"
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_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id A1BC6
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C02
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
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loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1BC6 "Create component" 2024-10-24 RCSB
A1BC6 "Modify PCM" 2024-10-24 RCSB
A1BC6 "Other modification" 2025-01-29 RCSB
A1BC6 "Initial release" 2025-02-05 RCSB
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