data_A1BCY # _chem_comp.id A1BCY _chem_comp.name "N-[(2S)-3-cyclopropyl-1-{[(1Z,2S)-1-imino-4-(methanesulfonyl)butan-2-yl]amino}-1-oxopropan-2-yl]-4-methoxy-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H28 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-07 _chem_comp.pdbx_modified_date 2025-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.536 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BCY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DU2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BCY C4 C1 C 0 1 Y N N N N N -23.529 -11.335 -3.475 7.494 -1.256 -0.756 C4 A1BCY 1 A1BCY C5 C2 C 0 1 Y N N N N N -22.872 -10.153 -3.144 7.025 -1.156 -2.058 C5 A1BCY 2 A1BCY C6 C3 C 0 1 Y N N N N N -22.204 -10.014 -1.932 5.710 -0.831 -2.309 C6 A1BCY 3 A1BCY C7 C4 C 0 1 Y N N N N N -22.209 -11.094 -1.050 4.835 -0.597 -1.253 C7 A1BCY 4 A1BCY C10 C5 C 0 1 Y N N N N N -22.621 -13.199 -0.269 4.208 -0.409 0.920 C10 A1BCY 5 A1BCY C15 C6 C 0 1 N N S N N N -20.975 -14.712 3.532 -0.547 0.773 0.216 C15 A1BCY 6 A1BCY C17 C7 C 0 1 N N N N N N -21.704 -15.984 3.967 -0.623 2.278 0.482 C17 A1BCY 7 A1BCY C21 C8 C 0 1 N N N N N N -19.455 -14.827 3.485 -1.566 0.395 -0.827 C21 A1BCY 8 A1BCY C24 C9 C 0 1 N N S N N N -17.350 -14.574 4.715 -3.868 0.252 -1.616 C24 A1BCY 9 A1BCY C26 C10 C 0 1 N N N N N N -16.865 -15.312 5.924 -3.997 1.369 -2.619 C26 A1BCY 10 A1BCY C1 C11 C 0 1 N N N N N N -24.771 -13.786 -4.089 8.485 -1.481 1.748 C1 A1BCY 11 A1BCY C11 C12 C 0 1 Y N N N N N -22.867 -12.303 -1.356 5.303 -0.696 0.072 C11 A1BCY 12 A1BCY C12 C13 C 0 1 N N N N N N -21.243 -12.976 1.902 1.786 0.194 0.616 C12 A1BCY 13 A1BCY C3 C14 C 0 1 Y N N N N N -23.530 -12.409 -2.589 6.647 -1.029 0.311 C3 A1BCY 14 A1BCY C34 C15 C 0 1 N N N N N N -16.914 -13.111 4.676 -5.220 0.011 -0.943 C34 A1BCY 15 A1BCY C36 C16 C 0 1 N N N N N N -15.484 -12.952 4.171 -5.120 -1.202 -0.016 C36 A1BCY 16 A1BCY C40 C17 C 0 1 N N N N N N -15.579 -11.107 2.068 -6.378 -2.941 1.811 C40 A1BCY 17 A1BCY C42 C18 C 0 1 N N N N N N -23.191 -15.749 4.207 0.323 2.642 1.628 C42 A1BCY 18 A1BCY C43 C19 C 0 1 N N N N N N -23.605 -14.852 5.310 0.305 4.088 2.127 C43 A1BCY 19 A1BCY C44 C20 C 0 1 N N N N N N -23.845 -16.317 5.407 1.492 3.575 1.309 C44 A1BCY 20 A1BCY C9 C21 C 0 1 Y N N N N N -21.840 -12.530 0.646 3.131 -0.150 0.134 C9 A1BCY 21 A1BCY N14 N1 N 0 1 N N N N N N -21.523 -14.231 2.272 0.794 0.430 -0.265 N14 A1BCY 22 A1BCY N23 N2 N 0 1 N N N N N N -18.811 -14.614 4.641 -2.876 0.619 -0.602 N23 A1BCY 23 A1BCY N38 N3 N 0 1 N N N N N N -15.740 -15.936 6.154 -3.291 2.428 -2.493 N38 A1BCY 24 A1BCY N8 N4 N 0 1 Y N N N N N -21.587 -11.255 0.183 3.502 -0.262 -1.194 N8 A1BCY 25 A1BCY O13 O1 O 0 1 N N N N N N -20.485 -12.239 2.557 1.568 0.265 1.811 O13 A1BCY 26 A1BCY O2 O2 O 0 1 N N N N N N -24.142 -13.606 -2.821 7.109 -1.133 1.584 O2 A1BCY 27 A1BCY O22 O3 O 0 1 N N N N N N -18.881 -15.099 2.431 -1.209 -0.111 -1.870 O22 A1BCY 28 A1BCY O39 O4 O 0 1 N N N N N N -13.673 -11.096 3.841 -7.008 -0.387 1.634 O39 A1BCY 29 A1BCY O41 O5 O 0 1 N N N N N N -15.925 -10.402 4.552 -7.667 -1.854 -0.216 O41 A1BCY 30 A1BCY S37 S1 S 0 1 N N N N N N -15.099 -11.267 3.750 -6.724 -1.487 0.782 S37 A1BCY 31 A1BCY H4 H1 H 0 1 N N N N N N -24.040 -11.419 -4.423 8.526 -1.516 -0.576 H4 A1BCY 32 A1BCY H5 H2 H 0 1 N N N N N N -22.881 -9.328 -3.841 7.698 -1.336 -2.883 H5 A1BCY 33 A1BCY H6 H3 H 0 1 N N N N N N -21.695 -9.095 -1.681 5.358 -0.756 -3.328 H6 A1BCY 34 A1BCY H8 H4 H 0 1 N N N N N N -22.981 -14.213 -0.182 4.225 -0.399 2.000 H8 A1BCY 35 A1BCY H10 H5 H 0 1 N N N N N N -21.203 -13.952 4.294 -0.752 0.230 1.138 H10 A1BCY 36 A1BCY H17 H6 H 0 1 N N N N N N -21.589 -16.744 3.180 -0.332 2.821 -0.416 H17 A1BCY 37 A1BCY H170 H7 H 0 0 N N N N N N -21.249 -16.350 4.899 -1.644 2.547 0.755 H170 A1BCY 38 A1BCY H21 H8 H 0 1 N N N N N N -16.940 -15.071 3.823 -3.548 -0.658 -2.124 H21 A1BCY 39 A1BCY H23 H9 H 0 1 N N N N N N -17.564 -15.332 6.747 -4.687 1.275 -3.445 H23 A1BCY 40 A1BCY H3 H10 H 0 1 N N N N N N -25.220 -14.789 -4.137 8.723 -1.530 2.811 H3 A1BCY 41 A1BCY H1 H11 H 0 1 N N N N N N -25.556 -13.026 -4.220 8.672 -2.452 1.289 H1 A1BCY 42 A1BCY H2 H12 H 0 1 N N N N N N -24.022 -13.681 -4.888 9.110 -0.727 1.270 H2 A1BCY 43 A1BCY H34 H13 H 0 1 N N N N N N -17.590 -12.557 4.008 -5.498 0.890 -0.361 H34 A1BCY 44 A1BCY H340 H14 H 0 0 N N N N N N -16.980 -12.694 5.692 -5.977 -0.175 -1.705 H340 A1BCY 45 A1BCY H33 H15 H 0 1 N N N N N N -14.792 -13.287 4.958 -4.842 -2.081 -0.597 H33 A1BCY 46 A1BCY H32 H16 H 0 1 N N N N N N -15.353 -13.579 3.276 -4.363 -1.016 0.746 H32 A1BCY 47 A1BCY H40B H17 H 0 0 N N N N N N -15.373 -10.083 1.723 -5.584 -2.703 2.519 H40B A1BCY 48 A1BCY H40A H18 H 0 0 N N N N N N -15.010 -11.822 1.455 -7.278 -3.223 2.356 H40A A1BCY 49 A1BCY H40C H19 H 0 0 N N N N N N -16.655 -11.317 1.972 -6.062 -3.769 1.176 H40C A1BCY 50 A1BCY H42 H20 H 0 1 N N N N N N -23.809 -15.708 3.298 0.492 1.857 2.366 H42 A1BCY 51 A1BCY H43B H21 H 0 0 N N N N N N -22.845 -14.375 5.947 -0.381 4.780 1.639 H43B A1BCY 52 A1BCY H43A H22 H 0 0 N N N N N N -24.452 -14.163 5.171 0.463 4.255 3.193 H43A A1BCY 53 A1BCY H44B H23 H 0 0 N N N N N N -23.263 -16.924 6.116 2.431 3.405 1.837 H44B A1BCY 54 A1BCY H44A H24 H 0 0 N N N N N N -24.869 -16.713 5.340 1.587 3.931 0.283 H44A A1BCY 55 A1BCY H9 H25 H 0 1 N N N N N N -22.092 -14.821 1.700 0.968 0.373 -1.218 H9 A1BCY 56 A1BCY H20 H26 H 0 1 N N N N N N -19.344 -14.479 5.476 -3.162 1.024 0.232 H20 A1BCY 57 A1BCY H38 H27 H 0 1 N N N N N N -15.714 -16.336 7.070 -3.375 3.147 -3.139 H38 A1BCY 58 A1BCY H7 H28 H 0 1 N N N N N N -21.045 -10.561 0.657 2.920 -0.126 -1.957 H7 A1BCY 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BCY C1 O2 SING N N 1 A1BCY O2 C3 SING N N 2 A1BCY C3 C11 DOUB Y N 3 A1BCY C11 C10 SING Y N 4 A1BCY C10 C9 DOUB Y N 5 A1BCY C9 C12 SING N N 6 A1BCY C12 N14 SING N N 7 A1BCY N14 C15 SING N N 8 A1BCY C15 C21 SING N N 9 A1BCY C21 N23 SING N N 10 A1BCY N23 C24 SING N N 11 A1BCY C24 C26 SING N N 12 A1BCY C26 N38 DOUB N N 13 A1BCY C24 C34 SING N N 14 A1BCY C34 C36 SING N N 15 A1BCY S37 C36 SING N N 16 A1BCY S37 O39 DOUB N N 17 A1BCY S37 C40 SING N N 18 A1BCY S37 O41 DOUB N N 19 A1BCY C21 O22 DOUB N N 20 A1BCY C15 C17 SING N N 21 A1BCY C17 C42 SING N N 22 A1BCY C42 C43 SING N N 23 A1BCY C43 C44 SING N N 24 A1BCY C12 O13 DOUB N N 25 A1BCY C9 N8 SING Y N 26 A1BCY N8 C7 SING Y N 27 A1BCY C7 C6 DOUB Y N 28 A1BCY C6 C5 SING Y N 29 A1BCY C5 C4 DOUB Y N 30 A1BCY C4 C3 SING Y N 31 A1BCY C7 C11 SING Y N 32 A1BCY C44 C42 SING N N 33 A1BCY C4 H4 SING N N 34 A1BCY C5 H5 SING N N 35 A1BCY C6 H6 SING N N 36 A1BCY C10 H8 SING N N 37 A1BCY C15 H10 SING N N 38 A1BCY C17 H17 SING N N 39 A1BCY C17 H170 SING N N 40 A1BCY C24 H21 SING N N 41 A1BCY C26 H23 SING N N 42 A1BCY C1 H3 SING N N 43 A1BCY C1 H1 SING N N 44 A1BCY C1 H2 SING N N 45 A1BCY C34 H34 SING N N 46 A1BCY C34 H340 SING N N 47 A1BCY C36 H33 SING N N 48 A1BCY C36 H32 SING N N 49 A1BCY C40 H40B SING N N 50 A1BCY C40 H40A SING N N 51 A1BCY C40 H40C SING N N 52 A1BCY C42 H42 SING N N 53 A1BCY C43 H43B SING N N 54 A1BCY C43 H43A SING N N 55 A1BCY C44 H44B SING N N 56 A1BCY C44 H44A SING N N 57 A1BCY N14 H9 SING N N 58 A1BCY N23 H20 SING N N 59 A1BCY N38 H38 SING N N 60 A1BCY N8 H7 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BCY SMILES ACDLabs 14.52 "CS(=O)(=O)CCC(C=N)NC(=O)C(CC1CC1)NC(=O)c1cc2c(cccc2OC)[NH]1" A1BCY InChI InChI 1.06 "InChI=1S/C21H28N4O5S/c1-30-19-5-3-4-16-15(19)11-18(24-16)21(27)25-17(10-13-6-7-13)20(26)23-14(12-22)8-9-31(2,28)29/h3-5,11-14,17,22,24H,6-10H2,1-2H3,(H,23,26)(H,25,27)/b22-12+/t14-,17-/m0/s1" A1BCY InChIKey InChI 1.06 ULZDIEQSFFSWTK-RWPQHDDLSA-N A1BCY SMILES_CANONICAL CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC3CC3)C(=O)N[C@@H](CC[S](C)(=O)=O)C=N" A1BCY SMILES CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC3CC3)C(=O)N[CH](CC[S](C)(=O)=O)C=N" A1BCY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1cccc2c1cc([nH]2)C(=O)N[C@@H](CC3CC3)C(=O)N[C@@H](CCS(=O)(=O)C)C=N" A1BCY SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1cccc2c1cc([nH]2)C(=O)NC(CC3CC3)C(=O)NC(CCS(=O)(=O)C)C=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BCY "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2S)-3-cyclopropyl-1-{[(1Z,2S)-1-imino-4-(methanesulfonyl)butan-2-yl]amino}-1-oxopropan-2-yl]-4-methoxy-1H-indole-2-carboxamide" A1BCY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-4-methylsulfonyl-butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-4-methoxy-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BCY "Create component" 2024-10-07 RCSB A1BCY "Modify PCM" 2024-10-07 RCSB A1BCY "Initial release" 2025-04-30 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BCY _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C26 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #