data_A1BD2 # _chem_comp.id A1BD2 _chem_comp.name dyphylline _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-22 _chem_comp.pdbx_modified_date 2024-10-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 254.243 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BD2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9E1A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BD2 N1 N1 N 0 1 N N N N N N 175.832 227.601 247.809 2.553 -0.820 -0.252 N1 A1BD2 1 A1BD2 N3 N2 N 0 1 Y N N N N N 173.370 229.781 249.016 -0.846 -0.959 0.666 N3 A1BD2 2 A1BD2 C4 C1 C 0 1 N N N N N N 175.576 229.190 250.172 0.684 1.092 0.373 C4 A1BD2 3 A1BD2 C5 C2 C 0 1 N N N N N N 176.839 227.582 248.740 2.861 0.491 -0.256 C5 A1BD2 4 A1BD2 C6 C3 C 0 1 N N N N N N 177.749 228.346 250.888 2.336 2.843 0.029 C6 A1BD2 5 A1BD2 C7 C4 C 0 1 Y N N N N N 172.867 229.355 247.821 -0.576 -2.270 0.513 C7 A1BD2 6 A1BD2 C8 C5 C 0 1 N N N N N N 172.761 230.707 249.964 -2.133 -0.374 1.051 C8 A1BD2 7 A1BD2 C10 C6 C 0 1 N N N N N N 174.433 232.538 250.195 -4.194 0.751 0.197 C10 A1BD2 8 A1BD2 C1 C7 C 0 1 N N N N N N 175.973 226.774 246.610 3.578 -1.813 -0.584 C1 A1BD2 9 A1BD2 C2 C8 C 0 1 Y N N N N N 174.725 228.379 248.020 1.271 -1.232 0.073 C2 A1BD2 10 A1BD2 C3 C9 C 0 1 Y N N N N N 174.595 229.143 249.149 0.318 -0.271 0.390 C3 A1BD2 11 A1BD2 O1 O1 O 0 1 N N N N N N 175.532 229.849 251.203 -0.133 1.952 0.648 O1 A1BD2 12 A1BD2 N2 N3 N 0 1 N N N N N N 176.673 228.369 249.885 1.949 1.430 0.049 N2 A1BD2 13 A1BD2 O2 O2 O 0 1 N N N N N N 177.826 226.895 248.565 3.992 0.833 -0.544 O2 A1BD2 14 A1BD2 N4 N4 N 0 1 Y N N N N N 173.663 228.496 247.187 0.676 -2.424 0.163 N4 A1BD2 15 A1BD2 C9 C10 C 0 1 N N R N N N 173.097 232.130 249.617 -2.908 0.028 -0.206 C9 A1BD2 16 A1BD2 O3 O3 O 0 1 N N N N N N 174.609 233.945 250.100 -4.860 1.228 -0.974 O3 A1BD2 17 A1BD2 O4 O4 O 0 1 N N N N N N 172.080 232.968 250.142 -3.234 -1.143 -0.958 O4 A1BD2 18 A1BD2 H1 H1 H 0 1 N N N N N N 177.483 229.006 251.727 3.385 2.929 -0.252 H1 A1BD2 19 A1BD2 H2 H2 H 0 1 N N N N N N 177.883 227.319 251.258 1.721 3.378 -0.695 H2 A1BD2 20 A1BD2 H3 H3 H 0 1 N N N N N N 178.686 228.695 250.429 2.188 3.274 1.019 H3 A1BD2 21 A1BD2 H4 H4 H 0 1 N N N N N N 171.916 229.683 247.428 -1.284 -3.072 0.658 H4 A1BD2 22 A1BD2 H5 H5 H 0 1 N N N N N N 171.669 230.579 249.941 -2.711 -1.106 1.615 H5 A1BD2 23 A1BD2 H6 H6 H 0 1 N N N N N N 173.135 230.485 250.974 -1.961 0.507 1.669 H6 A1BD2 24 A1BD2 H7 H7 H 0 1 N N N N N N 174.476 232.239 251.253 -4.848 0.060 0.730 H7 A1BD2 25 A1BD2 H8 H8 H 0 1 N N N N N N 175.237 232.034 249.638 -3.951 1.592 0.845 H8 A1BD2 26 A1BD2 H9 H9 H 0 1 N N N N N N 176.932 226.236 246.646 3.564 -2.004 -1.657 H9 A1BD2 27 A1BD2 H10 H10 H 0 1 N N N N N N 175.147 226.049 246.566 4.558 -1.434 -0.296 H10 A1BD2 28 A1BD2 H11 H11 H 0 1 N N N N N N 175.946 227.416 245.717 3.374 -2.740 -0.047 H11 A1BD2 29 A1BD2 H12 H12 H 0 1 N N N N N N 173.140 232.229 248.522 -2.293 0.691 -0.814 H12 A1BD2 30 A1BD2 H13 H13 H 0 1 N N N N N N 175.452 234.185 250.467 -5.685 1.697 -0.794 H13 A1BD2 31 A1BD2 H14 H14 H 0 1 N N N N N N 172.276 233.874 249.932 -3.781 -1.779 -0.478 H14 A1BD2 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BD2 C1 N1 SING N N 1 A1BD2 N4 C7 DOUB Y N 2 A1BD2 N4 C2 SING Y N 3 A1BD2 N1 C2 SING N N 4 A1BD2 N1 C5 SING N N 5 A1BD2 C7 N3 SING Y N 6 A1BD2 C2 C3 DOUB Y N 7 A1BD2 O2 C5 DOUB N N 8 A1BD2 C5 N2 SING N N 9 A1BD2 N3 C3 SING Y N 10 A1BD2 N3 C8 SING N N 11 A1BD2 C3 C4 SING N N 12 A1BD2 C9 C8 SING N N 13 A1BD2 C9 O4 SING N N 14 A1BD2 C9 C10 SING N N 15 A1BD2 N2 C4 SING N N 16 A1BD2 N2 C6 SING N N 17 A1BD2 O3 C10 SING N N 18 A1BD2 C4 O1 DOUB N N 19 A1BD2 C6 H1 SING N N 20 A1BD2 C6 H2 SING N N 21 A1BD2 C6 H3 SING N N 22 A1BD2 C7 H4 SING N N 23 A1BD2 C8 H5 SING N N 24 A1BD2 C8 H6 SING N N 25 A1BD2 C10 H7 SING N N 26 A1BD2 C10 H8 SING N N 27 A1BD2 C1 H9 SING N N 28 A1BD2 C1 H10 SING N N 29 A1BD2 C1 H11 SING N N 30 A1BD2 C9 H12 SING N N 31 A1BD2 O3 H13 SING N N 32 A1BD2 O4 H14 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BD2 SMILES ACDLabs 14.52 "OCC(O)Cn1cnc2c1C(=O)N(C)C(=O)N2C" A1BD2 InChI InChI 1.06 "InChI=1S/C10H14N4O4/c1-12-8-7(9(17)13(2)10(12)18)14(5-11-8)3-6(16)4-15/h5-6,15-16H,3-4H2,1-2H3/t6-/m1/s1" A1BD2 InChIKey InChI 1.06 KSCFJBIXMNOVSH-ZCFIWIBFSA-N A1BD2 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2ncn(C[C@@H](O)CO)c2C1=O" A1BD2 SMILES CACTVS 3.385 "CN1C(=O)N(C)c2ncn(C[CH](O)CO)c2C1=O" A1BD2 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN1c2c(n(cn2)C[C@H](CO)O)C(=O)N(C1=O)C" A1BD2 SMILES "OpenEye OEToolkits" 3.1.0.0 "CN1c2c(n(cn2)CC(CO)O)C(=O)N(C1=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BD2 "SYSTEMATIC NAME" ACDLabs 14.52 "7-[(2R)-2,3-dihydroxypropyl]-1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione" A1BD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "7-[(2~{R})-2,3-bis(oxidanyl)propyl]-1,3-dimethyl-purine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BD2 "Create component" 2024-10-22 RCSB A1BD2 "Initial release" 2024-10-30 RCSB #