data_A1BDB # _chem_comp.id A1BDB _chem_comp.name "(3S)-piperidine-3-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-14 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BDB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DL6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BDB C02 C1 C 0 1 N N N N N N -21.800 74.454 100.314 1.718 -0.084 -0.040 C02 A1BDB 1 A1BDB C04 C2 C 0 1 N N S N N N -21.492 74.561 101.837 0.265 0.012 -0.431 C04 A1BDB 2 A1BDB C05 C3 C 0 1 N N N N N N -21.244 75.995 102.141 -0.454 -1.283 -0.046 C05 A1BDB 3 A1BDB C06 C4 C 0 1 N N N N N N -20.986 76.254 103.591 -1.941 -1.154 -0.391 C06 A1BDB 4 A1BDB C07 C5 C 0 1 N N N N N N -21.393 75.072 104.477 -2.526 0.055 0.341 C07 A1BDB 5 A1BDB C09 C6 C 0 1 N N N N N N -22.666 73.982 102.646 -0.384 1.188 0.303 C09 A1BDB 6 A1BDB N08 N1 N 0 1 N N N N N N -22.700 74.507 104.042 -1.804 1.269 -0.061 N08 A1BDB 7 A1BDB O01 O1 O 0 1 N N N N N N -22.684 75.198 99.805 2.547 0.943 -0.282 O01 A1BDB 8 A1BDB O03 O2 O 0 1 N N N N N N -21.162 73.633 99.605 2.134 -1.084 0.496 O03 A1BDB 9 A1BDB H1 H1 H 0 1 N N N N N N -20.586 73.976 102.055 0.187 0.167 -1.507 H1 A1BDB 10 A1BDB H2 H2 H 0 1 N N N N N N -20.368 76.328 101.565 -0.023 -2.117 -0.600 H2 A1BDB 11 A1BDB H3 H3 H 0 1 N N N N N N -22.127 76.575 101.834 -0.343 -1.458 1.024 H3 A1BDB 12 A1BDB H4 H4 H 0 1 N N N N N N -19.912 76.446 103.730 -2.054 -1.018 -1.467 H4 A1BDB 13 A1BDB H5 H5 H 0 1 N N N N N N -21.560 77.140 103.899 -2.466 -2.057 -0.081 H5 A1BDB 14 A1BDB H6 H6 H 0 1 N N N N N N -20.622 74.290 104.410 -3.581 0.159 0.087 H6 A1BDB 15 A1BDB H7 H7 H 0 1 N N N N N N -21.478 75.415 105.519 -2.425 -0.088 1.417 H7 A1BDB 16 A1BDB H8 H8 H 0 1 N N N N N N -23.608 74.248 102.144 -0.293 1.039 1.379 H8 A1BDB 17 A1BDB H9 H9 H 0 1 N N N N N N -22.566 72.887 102.681 0.117 2.114 0.021 H9 A1BDB 18 A1BDB H10 H10 H 0 1 N N N N N N -23.393 75.226 104.096 -2.233 2.092 0.336 H10 A1BDB 19 A1BDB H12 H12 H 0 1 N N N N N N -22.751 75.019 98.874 3.470 0.835 -0.014 H12 A1BDB 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BDB O03 C02 DOUB N N 1 A1BDB O01 C02 SING N N 2 A1BDB C02 C04 SING N N 3 A1BDB C04 C05 SING N N 4 A1BDB C04 C09 SING N N 5 A1BDB C05 C06 SING N N 6 A1BDB C09 N08 SING N N 7 A1BDB C06 C07 SING N N 8 A1BDB N08 C07 SING N N 9 A1BDB C04 H1 SING N N 10 A1BDB C05 H2 SING N N 11 A1BDB C05 H3 SING N N 12 A1BDB C06 H4 SING N N 13 A1BDB C06 H5 SING N N 14 A1BDB C07 H6 SING N N 15 A1BDB C07 H7 SING N N 16 A1BDB C09 H8 SING N N 17 A1BDB C09 H9 SING N N 18 A1BDB N08 H10 SING N N 19 A1BDB O01 H12 SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BDB SMILES ACDLabs 14.52 "O=C(O)C1CCCNC1" A1BDB InChI InChI 1.06 "InChI=1S/C6H11NO2/c8-6(9)5-2-1-3-7-4-5/h5,7H,1-4H2,(H,8,9)/t5-/m0/s1" A1BDB InChIKey InChI 1.06 XJLSEXAGTJCILF-YFKPBYRVSA-N A1BDB SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H]1CCCNC1" A1BDB SMILES CACTVS 3.385 "OC(=O)[CH]1CCCNC1" A1BDB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1C[C@@H](CNC1)C(=O)O" A1BDB SMILES "OpenEye OEToolkits" 3.1.0.0 "C1CC(CNC1)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BDB "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-piperidine-3-carboxylic acid" A1BDB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-piperidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BDB "Create component" 2024-10-14 RCSB A1BDB "Initial release" 2024-11-27 RCSB #