data_A1BDF # _chem_comp.id A1BDF _chem_comp.name "(5R,8R)-6,7,8,9-tetrahydro-5H-5,8-epiminocyclohepta[d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-15 _chem_comp.pdbx_modified_date 2024-10-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 161.204 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BDF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HKR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BDF N1 N1 N 0 1 Y N N N N N -27.221 -27.506 -41.532 -1.714 -1.299 0.184 N1 A1BDF 1 A1BDF C4 C1 C 0 1 N N N N N N -28.185 -29.743 -41.441 0.684 -1.695 -0.131 C4 A1BDF 2 A1BDF C5 C2 C 0 1 Y N N N N N -27.955 -28.382 -40.833 -0.514 -0.788 -0.055 C5 A1BDF 3 A1BDF C6 C3 C 0 1 Y N N N N N -27.080 -26.303 -40.969 -2.776 -0.522 0.244 C6 A1BDF 4 A1BDF C7 C4 C 0 1 Y N N N N N -28.280 -26.798 -39.119 -1.534 1.365 -0.168 C7 A1BDF 5 A1BDF C8 C5 C 0 1 Y N N N N N -28.522 -28.080 -39.591 -0.400 0.577 -0.231 C8 A1BDF 6 A1BDF N N2 N 0 1 N N N N N N -28.786 -30.383 -39.183 1.760 0.202 -1.229 N A1BDF 7 A1BDF C C6 C 0 1 N N N N N N -30.582 -30.078 -40.689 2.255 -0.153 1.092 C A1BDF 8 A1BDF C1 C7 C 0 1 N N N N N N -30.755 -29.093 -39.512 1.652 1.257 0.913 C1 A1BDF 9 A1BDF C2 C8 C 0 1 N N R N N N -29.372 -29.084 -38.836 0.956 1.202 -0.473 C2 A1BDF 10 A1BDF C3 C9 C 0 1 N N S N N N -29.133 -30.585 -40.599 1.974 -0.882 -0.235 C3 A1BDF 11 A1BDF N2 N3 N 0 1 Y N N N N N -27.571 -25.889 -39.801 -2.700 0.782 0.070 N2 A1BDF 12 A1BDF H8 H1 H 0 1 N N N N N N -27.220 -30.265 -41.521 0.722 -2.315 0.765 H8 A1BDF 13 A1BDF H7 H2 H 0 1 N N N N N N -28.617 -29.616 -42.445 0.594 -2.336 -1.008 H7 A1BDF 14 A1BDF H9 H3 H 0 1 N N N N N N -26.500 -25.581 -41.525 -3.740 -0.967 0.442 H9 A1BDF 15 A1BDF H10 H4 H 0 1 N N N N N N -28.682 -26.520 -38.156 -1.470 2.434 -0.310 H10 A1BDF 16 A1BDF H11 H5 H 0 1 N N N N N N -27.793 -30.365 -39.062 1.251 -0.139 -2.031 H11 A1BDF 17 A1BDF H H7 H 0 1 N N N N N N -31.288 -30.916 -40.594 3.328 -0.085 1.267 H A1BDF 18 A1BDF H1 H8 H 0 1 N N N N N N -30.749 -29.564 -41.647 1.767 -0.670 1.918 H1 A1BDF 19 A1BDF H3 H9 H 0 1 N N N N N N -31.020 -28.089 -39.876 0.924 1.463 1.697 H3 A1BDF 20 A1BDF H2 H10 H 0 1 N N N N N N -31.530 -29.447 -38.816 2.439 2.011 0.915 H2 A1BDF 21 A1BDF H4 H11 H 0 1 N N N N N N -29.423 -28.887 -37.755 0.896 2.175 -0.960 H4 A1BDF 22 A1BDF H6 H12 H 0 1 N N N N N N -29.074 -31.646 -40.884 2.818 -1.510 -0.519 H6 A1BDF 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BDF C C1 SING N N 1 A1BDF C1 C2 SING N N 2 A1BDF C2 N SING N N 3 A1BDF N C3 SING N N 4 A1BDF C C3 SING N N 5 A1BDF C3 C4 SING N N 6 A1BDF C4 C5 SING N N 7 A1BDF C5 N1 DOUB Y N 8 A1BDF N1 C6 SING Y N 9 A1BDF C6 N2 DOUB Y N 10 A1BDF N2 C7 SING Y N 11 A1BDF C8 C7 DOUB Y N 12 A1BDF C2 C8 SING N N 13 A1BDF C5 C8 SING Y N 14 A1BDF C4 H8 SING N N 15 A1BDF C4 H7 SING N N 16 A1BDF C6 H9 SING N N 17 A1BDF C7 H10 SING N N 18 A1BDF N H11 SING N N 19 A1BDF C H SING N N 20 A1BDF C H1 SING N N 21 A1BDF C1 H3 SING N N 22 A1BDF C1 H2 SING N N 23 A1BDF C2 H4 SING N N 24 A1BDF C3 H6 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BDF SMILES ACDLabs 14.52 "c1nc2CC3CCC(N3)c2cn1" A1BDF InChI InChI 1.06 "InChI=1S/C9H11N3/c1-2-8-7-4-10-5-11-9(7)3-6(1)12-8/h4-6,8,12H,1-3H2" A1BDF InChIKey InChI 1.06 OTYQMHKAYHPBDY-UHFFFAOYSA-N A1BDF SMILES_CANONICAL CACTVS 3.385 "C1C[C@H]2N[C@@H]1Cc3ncncc23" A1BDF SMILES CACTVS 3.385 "C1C[CH]2N[CH]1Cc3ncncc23" A1BDF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c2c(ncn1)C[C@@H]3CC[C@H]2N3" A1BDF SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c2c(ncn1)CC3CCC2N3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BDF "SYSTEMATIC NAME" ACDLabs 14.52 "(5R,8R)-6,7,8,9-tetrahydro-5H-5,8-epiminocyclohepta[d]pyrimidine" A1BDF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},9~{S})-4,6,12-triazatricyclo[7.2.1.0^{2,7}]dodeca-2,4,6-triene" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BDF "Create component" 2024-10-15 RCSB A1BDF "Initial release" 2024-10-30 RCSB #