data_A1BDR # _chem_comp.id A1BDR _chem_comp.name "N-{7-[(4-aminobutyl)amino]heptyl}-Nalpha-butanoyl-D-tyrosinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H42 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-15 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.615 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BDR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DXQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BDR C7 C1 C 0 1 Y N N N N N 151.436 150.612 118.691 5.421 -1.663 -0.482 C7 A1BDR 1 A1BDR C11 C2 C 0 1 Y N N N N N 151.661 153.012 118.499 7.795 -1.970 -0.475 C11 A1BDR 2 A1BDR C13 C3 C 0 1 N N N N N N 149.347 149.561 116.574 2.586 0.719 0.397 C13 A1BDR 3 A1BDR C18 C4 C 0 1 N N N N N N 149.333 150.259 109.117 -4.827 0.575 0.060 C18 A1BDR 4 A1BDR C14 C5 C 0 1 N N N N N N 149.337 150.014 114.166 0.158 0.859 0.255 C14 A1BDR 5 A1BDR C15 C6 C 0 1 N N N N N N 150.084 149.611 112.911 -1.045 -0.082 0.356 C15 A1BDR 6 A1BDR C17 C7 C 0 1 N N N N N N 150.072 149.705 110.326 -3.537 -0.223 0.258 C17 A1BDR 7 A1BDR O1 O1 O 0 1 N N N N N N 148.792 146.527 118.963 4.728 1.989 -0.916 O1 A1BDR 8 A1BDR C1 C8 C 0 1 N N N N N N 149.890 147.758 122.146 7.756 4.764 -0.181 C1 A1BDR 9 A1BDR C10 C9 C 0 1 Y N N N N N 151.563 153.143 119.872 7.623 -3.287 -0.074 C10 A1BDR 10 A1BDR C12 C10 C 0 1 Y N N N N N 151.600 151.756 117.919 6.694 -1.161 -0.677 C12 A1BDR 11 A1BDR C16 C11 C 0 1 N N N N N N 149.320 149.926 111.631 -2.335 0.717 0.157 C16 A1BDR 12 A1BDR C19 C12 C 0 1 N N N N N N 150.224 150.433 107.895 -6.030 -0.365 0.160 C19 A1BDR 13 A1BDR C2 C13 C 0 1 N N N N N N 148.501 147.210 121.916 6.623 3.814 -0.576 C2 A1BDR 14 A1BDR C20 C14 C 0 1 N N N N N N 150.354 149.238 106.971 -7.320 0.433 -0.038 C20 A1BDR 15 A1BDR C21 C15 C 0 1 N N N N N N 149.057 150.285 105.153 -9.733 0.264 -0.127 C21 A1BDR 16 A1BDR C22 C16 C 0 1 N N N N N N 150.233 150.437 104.208 -10.910 -0.708 -0.020 C22 A1BDR 17 A1BDR C23 C17 C 0 1 N N N N N N 150.097 151.640 103.287 -12.222 0.056 -0.214 C23 A1BDR 18 A1BDR C24 C18 C 0 1 N N N N N N 151.239 151.819 102.310 -13.399 -0.915 -0.106 C24 A1BDR 19 A1BDR C3 C19 C 0 1 N N N N N N 147.829 147.838 120.726 6.417 2.778 0.532 C3 A1BDR 20 A1BDR C4 C20 C 0 1 N N N N N N 148.615 147.644 119.452 5.302 1.842 0.143 C4 A1BDR 21 A1BDR C5 C21 C 0 1 N N R N N N 149.960 148.746 117.712 3.857 -0.068 0.593 C5 A1BDR 22 A1BDR C6 C22 C 0 1 N N N N N N 151.374 149.245 118.052 4.221 -0.781 -0.711 C6 A1BDR 23 A1BDR C8 C23 C 0 1 Y N N N N N 151.348 150.767 120.071 5.246 -2.976 -0.083 C8 A1BDR 24 A1BDR C9 C24 C 0 1 Y N N N N N 151.405 152.018 120.662 6.344 -3.789 0.122 C9 A1BDR 25 A1BDR N1 N1 N 0 1 N N N N N N 149.118 148.759 118.896 4.941 0.842 0.971 N1 A1BDR 26 A1BDR N2 N2 N 0 1 N N N N N N 149.872 149.377 115.359 1.393 0.094 0.445 N2 A1BDR 27 A1BDR N3 N3 N 0 1 N N N N N N 149.214 149.135 106.053 -8.474 -0.470 0.059 N3 A1BDR 28 A1BDR N4 N4 N 0 1 N N N N N N 151.083 152.958 101.398 -14.658 -0.182 -0.292 N4 A1BDR 29 A1BDR O2 O2 O 0 1 N N N N N N 151.624 154.379 120.443 8.705 -4.085 0.127 O2 A1BDR 30 A1BDR O3 O3 O 0 1 N N N N N N 148.410 150.334 116.788 2.638 1.914 0.197 O3 A1BDR 31 A1BDR H1 H1 H 0 1 N N N N N N 151.785 153.888 117.880 8.790 -1.578 -0.627 H1 A1BDR 32 A1BDR H2 H2 H 0 1 N N N N N N 148.912 151.239 109.384 -4.901 1.343 0.829 H2 A1BDR 33 A1BDR H3 H3 H 0 1 N N N N N N 148.518 149.567 108.859 -4.815 1.046 -0.924 H3 A1BDR 34 A1BDR H4 H4 H 0 1 N N N N N N 149.410 151.105 114.285 0.170 1.330 -0.728 H4 A1BDR 35 A1BDR H5 H5 H 0 1 N N N N N N 148.281 149.727 114.056 0.084 1.627 1.025 H5 A1BDR 36 A1BDR H6 H6 H 0 1 N N N N N N 150.272 148.528 112.949 -0.971 -0.850 -0.414 H6 A1BDR 37 A1BDR H7 H7 H 0 1 N N N N N N 151.043 150.149 112.887 -1.056 -0.552 1.339 H7 A1BDR 38 A1BDR H8 H8 H 0 1 N N N N N N 150.218 148.624 110.183 -3.549 -0.694 1.241 H8 A1BDR 39 A1BDR H9 H9 H 0 1 N N N N N N 151.051 150.201 110.397 -3.463 -0.992 -0.512 H9 A1BDR 40 A1BDR H10 H10 H 0 1 N N N N N N 150.337 147.269 123.024 8.675 4.195 -0.039 H10 A1BDR 41 A1BDR H11 H11 H 0 1 N N N N N N 150.513 147.562 121.261 7.903 5.502 -0.969 H11 A1BDR 42 A1BDR H12 H12 H 0 1 N N N N N N 149.832 148.842 122.321 7.496 5.272 0.748 H12 A1BDR 43 A1BDR H13 H13 H 0 1 N N N N N N 151.681 151.664 116.846 6.828 -0.136 -0.989 H13 A1BDR 44 A1BDR H14 H14 H 0 1 N N N N N N 149.021 150.984 111.671 -2.408 1.485 0.927 H14 A1BDR 45 A1BDR H15 H15 H 0 1 N N N N N N 148.422 149.291 111.612 -2.323 1.188 -0.826 H15 A1BDR 46 A1BDR H16 H16 H 0 1 N N N N N N 151.232 150.690 108.252 -5.956 -1.134 -0.609 H16 A1BDR 47 A1BDR H17 H17 H 0 1 N N N N N N 149.820 151.269 107.304 -6.041 -0.836 1.143 H17 A1BDR 48 A1BDR H18 H18 H 0 1 N N N N N N 147.891 147.405 122.810 5.704 4.383 -0.717 H18 A1BDR 49 A1BDR H19 H19 H 0 1 N N N N N N 148.572 146.125 121.750 6.883 3.306 -1.504 H19 A1BDR 50 A1BDR H20 H20 H 0 1 N N N N N N 150.407 148.322 107.578 -7.393 1.201 0.732 H20 A1BDR 51 A1BDR H21 H21 H 0 1 N N N N N N 151.277 149.341 106.382 -7.308 0.904 -1.021 H21 A1BDR 52 A1BDR H22 H22 H 0 1 N N N N N N 148.968 151.199 105.758 -9.738 0.733 -1.111 H22 A1BDR 53 A1BDR H23 H23 H 0 1 N N N N N N 148.141 150.148 104.560 -9.824 1.031 0.642 H23 A1BDR 54 A1BDR H24 H24 H 0 1 N N N N N N 150.308 149.529 103.592 -10.820 -1.475 -0.789 H24 A1BDR 55 A1BDR H25 H25 H 0 1 N N N N N N 151.150 150.553 104.804 -10.905 -1.177 0.964 H25 A1BDR 56 A1BDR H26 H26 H 0 1 N N N N N N 150.034 152.544 103.911 -12.312 0.823 0.555 H26 A1BDR 57 A1BDR H27 H27 H 0 1 N N N N N N 149.167 151.527 102.710 -12.227 0.526 -1.197 H27 A1BDR 58 A1BDR H28 H28 H 0 1 N N N N N N 151.322 150.903 101.706 -13.308 -1.682 -0.875 H28 A1BDR 59 A1BDR H29 H29 H 0 1 N N N N N N 152.165 151.964 102.886 -13.394 -1.385 0.877 H29 A1BDR 60 A1BDR H30 H30 H 0 1 N N N N N N 147.718 148.917 120.912 7.336 2.209 0.673 H30 A1BDR 61 A1BDR H31 H31 H 0 1 N N N N N N 146.835 147.383 120.601 6.157 3.286 1.461 H31 A1BDR 62 A1BDR H32 H32 H 0 1 N N N N N N 150.053 147.707 117.362 3.710 -0.805 1.382 H32 A1BDR 63 A1BDR H33 H33 H 0 1 N N N N N N 151.832 148.524 118.745 4.455 -0.041 -1.477 H33 A1BDR 64 A1BDR H34 H34 H 0 1 N N N N N N 151.957 149.278 117.120 3.379 -1.390 -1.039 H34 A1BDR 65 A1BDR H35 H35 H 0 1 N N N N N N 151.233 149.893 120.695 4.251 -3.365 0.069 H35 A1BDR 66 A1BDR H36 H36 H 0 1 N N N N N N 151.326 152.115 121.735 6.207 -4.814 0.433 H36 A1BDR 67 A1BDR H37 H37 H 0 1 N N N N N N 148.903 149.640 119.317 5.400 0.725 1.818 H37 A1BDR 68 A1BDR H38 H38 H 0 1 N N N N N N 150.666 148.776 115.266 1.352 -0.861 0.605 H38 A1BDR 69 A1BDR H39 H39 H 0 1 N N N N N N 148.380 149.048 106.598 -8.472 -0.967 0.937 H39 A1BDR 70 A1BDR H41 H41 H 0 1 N N N N N N 151.874 153.008 100.788 -14.660 0.316 -1.170 H41 A1BDR 71 A1BDR H42 H42 H 0 1 N N N N N N 150.251 152.839 100.856 -15.451 -0.802 -0.226 H42 A1BDR 72 A1BDR H44 H44 H 0 1 N N N N N N 151.542 154.297 121.386 9.048 -4.062 1.031 H44 A1BDR 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BDR N4 C24 SING N N 1 A1BDR C24 C23 SING N N 2 A1BDR C23 C22 SING N N 3 A1BDR C22 C21 SING N N 4 A1BDR C21 N3 SING N N 5 A1BDR N3 C20 SING N N 6 A1BDR C20 C19 SING N N 7 A1BDR C19 C18 SING N N 8 A1BDR C18 C17 SING N N 9 A1BDR C17 C16 SING N N 10 A1BDR C16 C15 SING N N 11 A1BDR C15 C14 SING N N 12 A1BDR C14 N2 SING N N 13 A1BDR N2 C13 SING N N 14 A1BDR C13 O3 DOUB N N 15 A1BDR C13 C5 SING N N 16 A1BDR C5 C6 SING N N 17 A1BDR C5 N1 SING N N 18 A1BDR C12 C11 DOUB Y N 19 A1BDR C12 C7 SING Y N 20 A1BDR C6 C7 SING N N 21 A1BDR C11 C10 SING Y N 22 A1BDR C7 C8 DOUB Y N 23 A1BDR N1 C4 SING N N 24 A1BDR O1 C4 DOUB N N 25 A1BDR C4 C3 SING N N 26 A1BDR C10 O2 SING N N 27 A1BDR C10 C9 DOUB Y N 28 A1BDR C8 C9 SING Y N 29 A1BDR C3 C2 SING N N 30 A1BDR C2 C1 SING N N 31 A1BDR C11 H1 SING N N 32 A1BDR C18 H2 SING N N 33 A1BDR C18 H3 SING N N 34 A1BDR C14 H4 SING N N 35 A1BDR C14 H5 SING N N 36 A1BDR C15 H6 SING N N 37 A1BDR C15 H7 SING N N 38 A1BDR C17 H8 SING N N 39 A1BDR C17 H9 SING N N 40 A1BDR C1 H10 SING N N 41 A1BDR C1 H11 SING N N 42 A1BDR C1 H12 SING N N 43 A1BDR C12 H13 SING N N 44 A1BDR C16 H14 SING N N 45 A1BDR C16 H15 SING N N 46 A1BDR C19 H16 SING N N 47 A1BDR C19 H17 SING N N 48 A1BDR C2 H18 SING N N 49 A1BDR C2 H19 SING N N 50 A1BDR C20 H20 SING N N 51 A1BDR C20 H21 SING N N 52 A1BDR C21 H22 SING N N 53 A1BDR C21 H23 SING N N 54 A1BDR C22 H24 SING N N 55 A1BDR C22 H25 SING N N 56 A1BDR C23 H26 SING N N 57 A1BDR C23 H27 SING N N 58 A1BDR C24 H28 SING N N 59 A1BDR C24 H29 SING N N 60 A1BDR C3 H30 SING N N 61 A1BDR C3 H31 SING N N 62 A1BDR C5 H32 SING N N 63 A1BDR C6 H33 SING N N 64 A1BDR C6 H34 SING N N 65 A1BDR C8 H35 SING N N 66 A1BDR C9 H36 SING N N 67 A1BDR N1 H37 SING N N 68 A1BDR N2 H38 SING N N 69 A1BDR N3 H39 SING N N 70 A1BDR N4 H41 SING N N 71 A1BDR N4 H42 SING N N 72 A1BDR O2 H44 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BDR SMILES ACDLabs 14.52 "Oc1ccc(CC(NC(=O)CCC)C(=O)NCCCCCCCNCCCCN)cc1" A1BDR InChI InChI 1.06 "InChI=1S/C24H42N4O3/c1-2-10-23(30)28-22(19-20-11-13-21(29)14-12-20)24(31)27-18-8-5-3-4-7-16-26-17-9-6-15-25/h11-14,22,26,29H,2-10,15-19,25H2,1H3,(H,27,31)(H,28,30)/t22-/m1/s1" A1BDR InChIKey InChI 1.06 YKCMCIWNASWOOP-JOCHJYFZSA-N A1BDR SMILES_CANONICAL CACTVS 3.385 "CCCC(=O)N[C@H](Cc1ccc(O)cc1)C(=O)NCCCCCCCNCCCCN" A1BDR SMILES CACTVS 3.385 "CCCC(=O)N[CH](Cc1ccc(O)cc1)C(=O)NCCCCCCCNCCCCN" A1BDR SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCC(=O)N[C@H](Cc1ccc(cc1)O)C(=O)NCCCCCCCNCCCCN" A1BDR SMILES "OpenEye OEToolkits" 3.1.0.0 "CCCC(=O)NC(Cc1ccc(cc1)O)C(=O)NCCCCCCCNCCCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BDR "SYSTEMATIC NAME" ACDLabs 14.52 "N-{7-[(4-aminobutyl)amino]heptyl}-Nalpha-butanoyl-D-tyrosinamide" A1BDR "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(2~{R})-1-[7-(4-azanylbutylamino)heptylamino]-3-(4-hydroxyphenyl)-1-oxidanylidene-propan-2-yl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BDR "Create component" 2024-10-15 RCSB A1BDR "Initial release" 2024-12-11 RCSB #