data_A1BDS # _chem_comp.id A1BDS _chem_comp.name "N~1~-{5-[(N-{4-[(3-aminopropyl)amino]butyl}-beta-alanyl)amino]pentyl}-N~2~-[(1H-indol-3-yl)acetyl]-D-aspartamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H48 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-15 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 572.743 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BDS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DXR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BDS N1 N1 N 0 1 N N N N N N 188.519 194.419 140.583 19.899 -0.093 0.191 N1 A1BDS 1 A1BDS N3 N2 N 0 1 N N N N N N 190.653 189.233 149.254 8.821 -0.014 0.493 N3 A1BDS 2 A1BDS C4 C1 C 0 1 N N N N N N 188.607 192.249 145.920 13.758 0.035 0.807 C4 A1BDS 3 A1BDS C5 C2 C 0 1 N N N N N N 189.566 191.100 146.152 12.561 -0.139 -0.130 C5 A1BDS 4 A1BDS C6 C3 C 0 1 N N N N N N 189.414 190.472 147.527 11.264 0.013 0.666 C6 A1BDS 5 A1BDS C7 C4 C 0 1 N N N N N N 190.506 189.461 147.813 10.067 -0.161 -0.271 C7 A1BDS 6 A1BDS C8 C5 C 0 1 N N N N N N 190.953 190.478 149.968 7.648 -0.176 -0.376 C8 A1BDS 7 A1BDS C10 C6 C 0 1 N N N N N N 189.493 189.636 151.719 5.169 -0.182 -0.438 C10 A1BDS 8 A1BDS C13 C7 C 0 1 N N N N N N 189.797 190.598 156.510 0.261 -0.253 -0.864 C13 A1BDS 9 A1BDS C15 C8 C 0 1 N N N N N N 190.554 189.284 158.427 -2.236 -0.262 -0.939 C15 A1BDS 10 A1BDS C17 C9 C 0 1 N N R N N N 188.835 190.797 161.444 -5.920 -0.063 0.082 C17 A1BDS 11 A1BDS C20 C10 C 0 1 N N N N N N 188.954 192.502 163.291 -8.277 -0.581 -0.256 C20 A1BDS 12 A1BDS C21 C11 C 0 1 N N N N N N 189.616 192.760 164.636 -9.451 -0.859 -1.159 C21 A1BDS 13 A1BDS C22 C12 C 0 1 Y N N N N N 190.700 191.745 164.835 -10.649 -1.236 -0.324 C22 A1BDS 14 A1BDS C24 C13 C 0 1 Y N N N N N 191.807 189.789 165.257 -12.537 -1.118 0.973 C24 A1BDS 15 A1BDS C26 C14 C 0 1 Y N N N N N 190.884 187.721 165.924 -13.675 0.860 1.700 C26 A1BDS 16 A1BDS C28 C15 C 0 1 Y N N N N N 189.413 189.598 165.566 -11.716 1.077 0.345 C28 A1BDS 17 A1BDS O1 O1 O 0 1 N N N N N N 188.746 189.335 150.787 5.317 -0.405 -1.621 O1 A1BDS 18 A1BDS C23 C16 C 0 1 Y N N N N N 192.040 191.916 164.634 -11.044 -2.479 -0.010 C23 A1BDS 19 A1BDS C25 C17 C 0 1 Y N N N N N 192.000 188.458 165.609 -13.577 -0.514 1.672 C25 A1BDS 20 A1BDS N4 N3 N 0 1 N N N N N N 189.173 189.375 152.989 3.928 -0.083 0.079 N4 A1BDS 21 A1BDS C27 C18 C 0 1 Y N N N N N 189.607 188.279 165.907 -12.745 1.650 1.038 C27 A1BDS 22 A1BDS O2 O2 O 0 1 N N N N N N 191.069 190.915 160.586 -4.738 -0.443 -1.926 O2 A1BDS 23 A1BDS C9 C19 C 0 1 N N N N N N 190.815 190.316 151.461 6.372 -0.017 0.454 C9 A1BDS 24 A1BDS C18 C20 C 0 1 N N N N N N 188.180 189.469 161.844 -5.945 1.328 0.719 C18 A1BDS 25 A1BDS N2 N4 N 0 1 N N N N N N 188.835 192.883 144.616 15.004 -0.111 0.043 N2 A1BDS 26 A1BDS C19 C21 C 0 1 N N N N N N 189.106 188.274 161.981 -5.987 2.375 -0.364 C19 A1BDS 27 A1BDS C3 C22 C 0 1 N N N N N N 188.738 191.944 143.492 16.177 0.050 0.912 C3 A1BDS 28 A1BDS C2 C23 C 0 1 N N N N N N 189.073 192.611 142.177 17.453 -0.108 0.082 C2 A1BDS 29 A1BDS C1 C24 C 0 1 N N N N N N 188.189 193.796 141.868 18.674 0.059 0.988 C1 A1BDS 30 A1BDS O3 O3 O 0 1 N N N N N N 188.811 187.202 161.444 -5.948 2.044 -1.530 O3 A1BDS 31 A1BDS C11 C25 C 0 1 N N N N N N 189.979 189.715 154.151 2.758 -0.244 -0.788 C11 A1BDS 32 A1BDS C16 C26 C 0 1 N N N N N N 189.906 190.556 160.384 -4.664 -0.219 -0.736 C16 A1BDS 33 A1BDS C29 C27 C 0 1 Y N N N N N 190.526 190.381 165.241 -11.598 -0.313 0.303 C29 A1BDS 34 A1BDS N5 N5 N 0 1 N N N N N N 189.549 189.840 159.316 -3.458 -0.111 -0.145 N5 A1BDS 35 A1BDS N6 N6 N 0 1 N N N N N N 190.220 188.427 162.682 -6.069 3.680 -0.036 N6 A1BDS 36 A1BDS C14 C28 C 0 1 N N N N N N 190.059 189.186 157.012 -1.014 -0.094 -0.034 C14 A1BDS 37 A1BDS C12 C29 C 0 1 N N N N N N 189.223 190.617 155.100 1.483 -0.085 0.042 C12 A1BDS 38 A1BDS N7 N7 N 0 1 N N N N N N 189.408 191.441 162.613 -7.090 -0.224 -0.785 N7 A1BDS 39 A1BDS N8 N8 N 0 1 Y N N N N N 192.711 190.752 164.894 -12.172 -2.429 0.763 N8 A1BDS 40 A1BDS O4 O4 O 0 1 N N N N N N 188.006 193.188 162.901 -8.400 -0.679 0.946 O4 A1BDS 41 A1BDS H1 H1 H 0 1 N N N N N N 187.910 195.196 140.422 20.721 0.014 0.767 H1 A1BDS 42 A1BDS H2 H2 H 0 1 N N N N N N 189.467 194.737 140.601 19.908 -0.979 -0.292 H2 A1BDS 43 A1BDS H4 H4 H 0 1 N N N N N N 189.801 188.851 149.611 8.792 -0.665 1.264 H4 A1BDS 44 A1BDS H6 H6 H 0 1 N N N N N N 188.749 192.999 146.712 13.724 1.026 1.260 H6 A1BDS 45 A1BDS H7 H7 H 0 1 N N N N N N 187.576 191.867 145.957 13.720 -0.724 1.589 H7 A1BDS 46 A1BDS H8 H8 H 0 1 N N N N N N 189.380 190.328 145.391 12.599 0.620 -0.912 H8 A1BDS 47 A1BDS H9 H9 H 0 1 N N N N N N 190.595 191.475 146.049 12.595 -1.130 -0.583 H9 A1BDS 48 A1BDS H10 H10 H 0 1 N N N N N N 189.457 191.266 148.287 11.226 -0.745 1.448 H10 A1BDS 49 A1BDS H11 H11 H 0 1 N N N N N N 188.439 189.966 147.581 11.229 1.004 1.119 H11 A1BDS 50 A1BDS H12 H12 H 0 1 N N N N N N 190.251 188.510 147.323 10.101 -1.151 -0.724 H12 A1BDS 51 A1BDS H13 H13 H 0 1 N N N N N N 191.458 189.837 147.410 10.104 0.598 -1.053 H13 A1BDS 52 A1BDS H14 H14 H 0 1 N N N N N N 191.985 190.781 149.737 7.669 0.583 -1.159 H14 A1BDS 53 A1BDS H15 H15 H 0 1 N N N N N N 190.257 191.259 149.629 7.665 -1.166 -0.830 H15 A1BDS 54 A1BDS H16 H16 H 0 1 N N N N N N 190.745 191.155 156.513 0.278 -1.244 -1.318 H16 A1BDS 55 A1BDS H17 H17 H 0 1 N N N N N N 189.083 191.087 157.189 0.282 0.506 -1.646 H17 A1BDS 56 A1BDS H18 H18 H 0 1 N N N N N N 190.823 188.278 158.780 -2.219 -1.253 -1.393 H18 A1BDS 57 A1BDS H19 H19 H 0 1 N N N N N N 191.444 189.930 158.448 -2.215 0.496 -1.722 H19 A1BDS 58 A1BDS H20 H20 H 0 1 N N N N N N 188.060 191.448 161.013 -5.941 -0.822 0.864 H20 A1BDS 59 A1BDS H21 H21 H 0 1 N N N N N N 190.048 193.772 164.649 -9.681 0.032 -1.742 H21 A1BDS 60 A1BDS H22 H22 H 0 1 N N N N N N 188.871 192.669 165.440 -9.205 -1.680 -1.832 H22 A1BDS 61 A1BDS H23 H23 H 0 1 N N N N N N 190.999 186.681 166.192 -14.484 1.327 2.243 H23 A1BDS 62 A1BDS H24 H24 H 0 1 N N N N N N 188.419 190.021 165.550 -10.997 1.698 -0.168 H24 A1BDS 63 A1BDS H25 H25 H 0 1 N N N N N N 192.504 192.838 164.315 -10.545 -3.386 -0.322 H25 A1BDS 64 A1BDS H26 H26 H 0 1 N N N N N N 192.987 188.021 165.634 -14.306 -1.120 2.190 H26 A1BDS 65 A1BDS H27 H27 H 0 1 N N N N N N 188.306 188.906 153.155 3.810 0.095 1.025 H27 A1BDS 66 A1BDS H28 H28 H 0 1 N N N N N N 188.756 187.666 166.166 -12.837 2.725 1.070 H28 A1BDS 67 A1BDS H29 H29 H 0 1 N N N N N N 191.638 189.699 151.850 6.352 -0.776 1.236 H29 A1BDS 68 A1BDS H30 H30 H 0 1 N N N N N N 190.833 191.301 151.950 6.355 0.974 0.908 H30 A1BDS 69 A1BDS H31 H31 H 0 1 N N N N N N 187.683 189.620 162.813 -6.828 1.422 1.351 H31 A1BDS 70 A1BDS H32 H32 H 0 1 N N N N N N 187.428 189.223 161.080 -5.049 1.466 1.324 H32 A1BDS 71 A1BDS H33 H33 H 0 1 N N N N N N 189.750 193.287 144.615 15.033 0.539 -0.729 H33 A1BDS 72 A1BDS H35 H35 H 0 1 N N N N N N 187.711 191.552 143.442 16.160 1.041 1.366 H35 A1BDS 73 A1BDS H36 H36 H 0 1 N N N N N N 189.439 191.113 143.660 16.156 -0.709 1.695 H36 A1BDS 74 A1BDS H37 H37 H 0 1 N N N N N N 188.960 191.871 141.371 17.470 -1.099 -0.372 H37 A1BDS 75 A1BDS H38 H38 H 0 1 N N N N N N 190.117 192.955 142.215 17.473 0.650 -0.701 H38 A1BDS 76 A1BDS H39 H39 H 0 1 N N N N N N 188.310 194.544 142.665 18.653 -0.699 1.770 H39 A1BDS 77 A1BDS H40 H40 H 0 1 N N N N N N 187.143 193.458 141.838 18.657 1.050 1.441 H40 A1BDS 78 A1BDS H41 H41 H 0 1 N N N N N N 190.254 188.790 154.679 2.779 0.515 -1.571 H41 A1BDS 79 A1BDS H42 H42 H 0 1 N N N N N N 190.891 190.231 153.816 2.776 -1.234 -1.242 H42 A1BDS 80 A1BDS H43 H43 H 0 1 N N N N N N 188.580 189.685 159.126 -3.398 0.068 0.807 H43 A1BDS 81 A1BDS H44 H44 H 0 1 N N N N N N 190.853 187.660 162.789 -6.101 3.945 0.897 H44 A1BDS 82 A1BDS H45 H45 H 0 1 N N N N N N 190.428 189.309 163.104 -6.096 4.354 -0.733 H45 A1BDS 83 A1BDS H46 H46 H 0 1 N N N N N N 189.129 188.600 156.981 -1.035 -0.853 0.749 H46 A1BDS 84 A1BDS H47 H47 H 0 1 N N N N N N 190.820 188.701 156.383 -1.032 0.896 0.420 H47 A1BDS 85 A1BDS H48 H48 H 0 1 N N N N N N 189.266 191.647 154.716 1.465 0.906 0.495 H48 A1BDS 86 A1BDS H49 H49 H 0 1 N N N N N N 188.175 190.285 155.142 1.462 -0.844 0.824 H49 A1BDS 87 A1BDS H50 H50 H 0 1 N N N N N N 190.256 191.037 162.958 -7.010 -0.073 -1.740 H50 A1BDS 88 A1BDS H51 H51 H 0 1 N N N N N N 193.701 190.625 164.829 -12.642 -3.202 1.113 H51 A1BDS 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BDS N1 C1 SING N N 1 A1BDS C1 C2 SING N N 2 A1BDS C2 C3 SING N N 3 A1BDS C3 N2 SING N N 4 A1BDS N2 C4 SING N N 5 A1BDS C4 C5 SING N N 6 A1BDS C5 C6 SING N N 7 A1BDS C6 C7 SING N N 8 A1BDS C7 N3 SING N N 9 A1BDS N3 C8 SING N N 10 A1BDS C8 C9 SING N N 11 A1BDS O1 C10 DOUB N N 12 A1BDS C9 C10 SING N N 13 A1BDS C10 N4 SING N N 14 A1BDS N4 C11 SING N N 15 A1BDS C11 C12 SING N N 16 A1BDS C12 C13 SING N N 17 A1BDS C13 C14 SING N N 18 A1BDS C14 C15 SING N N 19 A1BDS C15 N5 SING N N 20 A1BDS N5 C16 SING N N 21 A1BDS C16 O2 DOUB N N 22 A1BDS C16 C17 SING N N 23 A1BDS O3 C19 DOUB N N 24 A1BDS C17 C18 SING N N 25 A1BDS C17 N7 SING N N 26 A1BDS C18 C19 SING N N 27 A1BDS C19 N6 SING N N 28 A1BDS N7 C20 SING N N 29 A1BDS O4 C20 DOUB N N 30 A1BDS C20 C21 SING N N 31 A1BDS C23 C22 DOUB Y N 32 A1BDS C23 N8 SING Y N 33 A1BDS C21 C22 SING N N 34 A1BDS C22 C29 SING Y N 35 A1BDS N8 C24 SING Y N 36 A1BDS C29 C24 DOUB Y N 37 A1BDS C29 C28 SING Y N 38 A1BDS C24 C25 SING Y N 39 A1BDS C28 C27 DOUB Y N 40 A1BDS C25 C26 DOUB Y N 41 A1BDS C27 C26 SING Y N 42 A1BDS N1 H1 SING N N 43 A1BDS N1 H2 SING N N 44 A1BDS N3 H4 SING N N 45 A1BDS C4 H6 SING N N 46 A1BDS C4 H7 SING N N 47 A1BDS C5 H8 SING N N 48 A1BDS C5 H9 SING N N 49 A1BDS C6 H10 SING N N 50 A1BDS C6 H11 SING N N 51 A1BDS C7 H12 SING N N 52 A1BDS C7 H13 SING N N 53 A1BDS C8 H14 SING N N 54 A1BDS C8 H15 SING N N 55 A1BDS C13 H16 SING N N 56 A1BDS C13 H17 SING N N 57 A1BDS C15 H18 SING N N 58 A1BDS C15 H19 SING N N 59 A1BDS C17 H20 SING N N 60 A1BDS C21 H21 SING N N 61 A1BDS C21 H22 SING N N 62 A1BDS C26 H23 SING N N 63 A1BDS C28 H24 SING N N 64 A1BDS C23 H25 SING N N 65 A1BDS C25 H26 SING N N 66 A1BDS N4 H27 SING N N 67 A1BDS C27 H28 SING N N 68 A1BDS C9 H29 SING N N 69 A1BDS C9 H30 SING N N 70 A1BDS C18 H31 SING N N 71 A1BDS C18 H32 SING N N 72 A1BDS N2 H33 SING N N 73 A1BDS C3 H35 SING N N 74 A1BDS C3 H36 SING N N 75 A1BDS C2 H37 SING N N 76 A1BDS C2 H38 SING N N 77 A1BDS C1 H39 SING N N 78 A1BDS C1 H40 SING N N 79 A1BDS C11 H41 SING N N 80 A1BDS C11 H42 SING N N 81 A1BDS N5 H43 SING N N 82 A1BDS N6 H44 SING N N 83 A1BDS N6 H45 SING N N 84 A1BDS C14 H46 SING N N 85 A1BDS C14 H47 SING N N 86 A1BDS C12 H48 SING N N 87 A1BDS C12 H49 SING N N 88 A1BDS N7 H50 SING N N 89 A1BDS N8 H51 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BDS SMILES ACDLabs 14.52 "NCCCNCCCCNCCC(=O)NCCCCCNC(=O)C(CC(N)=O)NC(=O)Cc1c[NH]c2ccccc21" A1BDS InChI InChI 1.06 "InChI=1S/C29H48N8O4/c30-12-8-15-32-13-6-7-14-33-18-11-27(39)34-16-4-1-5-17-35-29(41)25(20-26(31)38)37-28(40)19-22-21-36-24-10-3-2-9-23(22)24/h2-3,9-10,21,25,32-33,36H,1,4-8,11-20,30H2,(H2,31,38)(H,34,39)(H,35,41)(H,37,40)/t25-/m1/s1" A1BDS InChIKey InChI 1.06 ILUCYJIKJBTHOD-RUZDIDTESA-N A1BDS SMILES_CANONICAL CACTVS 3.385 "NCCCNCCCCNCCC(=O)NCCCCCNC(=O)[C@@H](CC(N)=O)NC(=O)Cc1c[nH]c2ccccc12" A1BDS SMILES CACTVS 3.385 "NCCCNCCCCNCCC(=O)NCCCCCNC(=O)[CH](CC(N)=O)NC(=O)Cc1c[nH]c2ccccc12" A1BDS SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)c(c[nH]2)CC(=O)N[C@H](CC(=O)N)C(=O)NCCCCCNC(=O)CCNCCCCNCCCN" A1BDS SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)c(c[nH]2)CC(=O)NC(CC(=O)N)C(=O)NCCCCCNC(=O)CCNCCCCNCCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BDS "SYSTEMATIC NAME" ACDLabs 14.52 "N~1~-{5-[(N-{4-[(3-aminopropyl)amino]butyl}-beta-alanyl)amino]pentyl}-N~2~-[(1H-indol-3-yl)acetyl]-D-aspartamide" A1BDS "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-~{N}-[5-[3-[4-(3-azanylpropylamino)butylamino]propanoylamino]pentyl]-2-[2-(1~{H}-indol-3-yl)ethanoylamino]butanediamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BDS "Create component" 2024-10-15 RCSB A1BDS "Initial release" 2024-12-11 RCSB #