data_A1BDT # _chem_comp.id A1BDT _chem_comp.name "N,N'-[butane-1,4-diylbis(azanediylpropane-3,1-diyl)]bis[3-(3,4-dihydroxyphenyl)propanamide]" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H42 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-15 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.656 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BDT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DXT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BDT C17 C1 C 0 1 N N N N N N 192.220 193.277 150.445 0.668 0.376 0.135 C17 A1BDT 1 A1BDT C21 C2 C 0 1 N N N N N N 192.902 192.769 155.010 -4.223 0.900 0.121 C21 A1BDT 2 A1BDT C22 C3 C 0 1 N N N N N N 192.218 191.595 155.677 -5.544 0.128 0.142 C22 A1BDT 3 A1BDT C28 C4 C 0 1 N N N N N N 190.711 194.580 159.759 -11.618 1.272 0.112 C28 A1BDT 4 A1BDT C12 C5 C 0 1 N N N N N N 193.047 193.516 146.187 6.708 -1.100 0.173 C12 A1BDT 5 A1BDT C14 C6 C 0 1 N N N N N N 191.447 192.235 147.706 4.219 -0.884 0.167 C14 A1BDT 6 A1BDT C16 C7 C 0 1 N N N N N N 193.225 192.675 149.488 1.810 -0.642 0.161 C16 A1BDT 7 A1BDT C23 C8 C 0 1 N N N N N N 192.359 191.545 157.185 -6.713 1.116 0.116 C23 A1BDT 8 A1BDT N24 N1 N 0 1 N N N N N N 191.856 192.761 157.807 -7.977 0.377 0.136 N24 A1BDT 9 A1BDT C31 C9 C 0 1 Y N N N N N 192.365 193.040 162.810 -14.699 -0.587 -1.038 C31 A1BDT 10 A1BDT C1 C10 C 0 1 Y N N N N N 192.727 194.918 141.646 13.509 -0.116 1.344 C1 A1BDT 11 A1BDT C13 C11 C 0 1 N N N N N N 191.771 193.538 147.006 5.540 -0.112 0.147 C13 A1BDT 12 A1BDT C18 C12 C 0 1 N N N N N N 191.731 192.232 151.405 -0.673 -0.360 0.154 C18 A1BDT 13 A1BDT C19 C13 C 0 1 N N N N N N 192.671 192.108 152.581 -1.814 0.658 0.127 C19 A1BDT 14 A1BDT C2 C14 C 0 1 Y N N N N N 191.947 194.651 140.535 14.706 0.576 1.331 C2 A1BDT 15 A1BDT C25 C15 C 0 1 N N N N N N 192.637 193.671 158.385 -9.148 1.044 0.118 C25 A1BDT 16 A1BDT C27 C16 C 0 1 N N N N N N 191.934 194.901 158.903 -10.449 0.284 0.138 C27 A1BDT 17 A1BDT C29 C17 C 0 1 Y N N N N N 191.030 193.629 160.885 -12.918 0.512 0.133 C29 A1BDT 18 A1BDT C3 C18 C 0 1 Y N N N N N 192.084 193.448 139.859 15.311 0.891 0.125 C3 A1BDT 19 A1BDT C30 C19 C 0 1 Y N N N N N 192.052 193.918 161.785 -13.505 0.117 -1.055 C30 A1BDT 20 A1BDT C32 C20 C 0 1 Y N N N N N 191.649 191.849 162.948 -15.304 -0.895 0.176 C32 A1BDT 21 A1BDT C33 C21 C 0 1 Y N N N N N 190.630 191.558 162.054 -14.708 -0.502 1.363 C33 A1BDT 22 A1BDT C34 C22 C 0 1 Y N N N N N 190.327 192.441 161.034 -13.514 0.195 1.340 C34 A1BDT 23 A1BDT C4 C23 C 0 1 Y N N N N N 193.013 192.510 140.310 14.712 0.508 -1.071 C4 A1BDT 24 A1BDT C5 C24 C 0 1 Y N N N N N 193.790 192.788 141.423 13.512 -0.185 -1.051 C5 A1BDT 25 A1BDT C6 C25 C 0 1 Y N N N N N 193.659 193.996 142.105 12.914 -0.496 0.156 C6 A1BDT 26 A1BDT C7 C26 C 0 1 N N N N N N 194.558 194.339 143.273 11.613 -1.256 0.176 C7 A1BDT 27 A1BDT C8 C27 C 0 1 N N N N N N 195.104 193.187 144.159 10.445 -0.268 0.150 C8 A1BDT 28 A1BDT C9 C28 C 0 1 N N N N N N 194.121 192.080 144.475 9.144 -1.028 0.170 C9 A1BDT 29 A1BDT N11 N2 N 0 1 N N N N N N 193.132 192.340 145.330 7.973 -0.361 0.153 N11 A1BDT 30 A1BDT N15 N3 N 0 1 N N N N N N 192.596 191.735 148.515 3.097 0.064 0.142 N15 A1BDT 31 A1BDT N20 N4 N 0 1 N N N N N N 192.315 193.055 153.672 -3.102 -0.049 0.146 N20 A1BDT 32 A1BDT O10 O1 O 0 1 N N N N N N 194.249 190.977 143.951 9.150 -2.241 0.203 O10 A1BDT 33 A1BDT O26 O2 O 0 1 N N N N N N 193.853 193.535 158.502 -9.155 2.257 0.086 O26 A1BDT 34 A1BDT O35 O3 O 0 1 N N N N N N 191.965 190.989 163.948 -16.478 -1.581 0.198 O35 A1BDT 35 A1BDT O36 O4 O 0 1 N N N N N N 193.366 193.314 163.683 -15.280 -0.971 -2.206 O36 A1BDT 36 A1BDT O37 O5 O 0 1 N N N N N N 193.121 191.331 139.647 15.301 0.816 -2.257 O37 A1BDT 37 A1BDT O38 O6 O 0 1 N N N N N N 191.342 193.161 138.760 16.488 1.572 0.111 O38 A1BDT 38 A1BDT H1 H1 H 0 1 N N N N N N 192.697 194.093 151.008 0.739 1.025 1.008 H1 A1BDT 39 A1BDT H2 H2 H 0 1 N N N N N N 191.367 193.674 149.875 0.739 0.978 -0.772 H2 A1BDT 40 A1BDT H3 H3 H 0 1 N N N N N N 193.971 192.538 154.889 -4.169 1.503 -0.785 H3 A1BDT 41 A1BDT H4 H4 H 0 1 N N N N N N 192.788 193.658 155.648 -4.169 1.550 0.995 H4 A1BDT 42 A1BDT H5 H5 H 0 1 N N N N N N 191.146 191.642 155.436 -5.599 -0.522 -0.731 H5 A1BDT 43 A1BDT H6 H6 H 0 1 N N N N N N 192.646 190.670 155.263 -5.599 -0.475 1.048 H6 A1BDT 44 A1BDT H7 H7 H 0 1 N N N N N N 190.324 195.517 160.187 -11.563 1.922 0.986 H7 A1BDT 45 A1BDT H8 H8 H 0 1 N N N N N N 189.942 194.124 159.119 -11.563 1.875 -0.794 H8 A1BDT 46 A1BDT H9 H9 H 0 1 N N N N N N 193.908 193.518 146.872 6.654 -1.703 1.079 H9 A1BDT 47 A1BDT H10 H10 H 0 1 N N N N N N 193.079 194.417 145.556 6.653 -1.750 -0.700 H10 A1BDT 48 A1BDT H11 H11 H 0 1 N N N N N N 190.586 192.394 148.372 4.164 -1.534 -0.706 H11 A1BDT 49 A1BDT H12 H12 H 0 1 N N N N N N 191.190 191.479 146.949 4.165 -1.487 1.074 H12 A1BDT 50 A1BDT H13 H13 H 0 1 N N N N N N 193.981 192.127 150.069 1.739 -1.244 1.067 H13 A1BDT 51 A1BDT H14 H14 H 0 1 N N N N N N 193.711 193.488 148.929 1.738 -1.291 -0.712 H14 A1BDT 52 A1BDT H15 H15 H 0 1 N N N N N N 191.790 190.685 157.569 -6.658 1.766 0.989 H15 A1BDT 53 A1BDT H16 H16 H 0 1 N N N N N N 193.422 191.426 157.441 -6.658 1.719 -0.790 H16 A1BDT 54 A1BDT H17 H17 H 0 1 N N N N N N 190.869 192.922 157.800 -7.972 -0.593 0.161 H17 A1BDT 55 A1BDT H18 H18 H 0 1 N N N N N N 192.609 195.858 142.165 13.041 -0.365 2.285 H18 A1BDT 56 A1BDT H19 H19 H 0 1 N N N N N N 191.868 194.323 147.770 5.594 0.538 1.020 H19 A1BDT 57 A1BDT H20 H20 H 0 1 N N N N N N 190.936 193.783 146.333 5.594 0.491 -0.759 H20 A1BDT 58 A1BDT H21 H21 H 0 1 N N N N N N 190.732 192.515 151.769 -0.744 -1.009 -0.719 H21 A1BDT 59 A1BDT H22 H22 H 0 1 N N N N N N 191.672 191.264 150.886 -0.744 -0.962 1.060 H22 A1BDT 60 A1BDT H23 H23 H 0 1 N N N N N N 192.621 191.080 152.970 -1.743 1.307 1.001 H23 A1BDT 61 A1BDT H24 H24 H 0 1 N N N N N N 193.695 192.323 152.243 -1.743 1.260 -0.779 H24 A1BDT 62 A1BDT H25 H25 H 0 1 N N N N N N 191.229 195.382 140.193 15.169 0.871 2.261 H25 A1BDT 63 A1BDT H26 H26 H 0 1 N N N N N N 192.645 195.479 159.512 -10.504 -0.319 1.045 H26 A1BDT 64 A1BDT H27 H27 H 0 1 N N N N N N 191.610 195.506 158.044 -10.504 -0.366 -0.735 H27 A1BDT 65 A1BDT H28 H28 H 0 1 N N N N N N 192.608 194.838 161.683 -13.034 0.357 -1.997 H28 A1BDT 66 A1BDT H29 H29 H 0 1 N N N N N N 190.071 190.639 162.155 -15.175 -0.740 2.307 H29 A1BDT 67 A1BDT H30 H30 H 0 1 N N N N N N 189.532 192.203 160.343 -13.052 0.505 2.266 H30 A1BDT 68 A1BDT H31 H31 H 0 1 N N N N N N 194.508 192.058 141.767 13.045 -0.482 -1.978 H31 A1BDT 69 A1BDT H32 H32 H 0 1 N N N N N N 195.428 194.874 142.865 11.558 -1.906 -0.697 H32 A1BDT 70 A1BDT H33 H33 H 0 1 N N N N N N 193.990 195.012 143.932 11.559 -1.859 1.082 H33 A1BDT 71 A1BDT H34 H34 H 0 1 N N N N N N 195.963 192.738 143.638 10.499 0.382 1.023 H34 A1BDT 72 A1BDT H35 H35 H 0 1 N N N N N N 195.440 193.623 145.111 10.499 0.335 -0.756 H35 A1BDT 73 A1BDT H36 H36 H 0 1 N N N N N N 192.388 191.674 145.388 7.968 0.609 0.127 H36 A1BDT 74 A1BDT H37 H37 H 0 1 N N N N N N 192.274 190.942 149.032 3.161 0.720 0.907 H37 A1BDT 75 A1BDT H39 H39 H 0 1 N N N N N N 192.618 193.967 153.395 -3.166 -0.704 -0.618 H39 A1BDT 76 A1BDT H41 H41 H 0 1 N N N N N N 192.681 191.347 164.460 -16.372 -2.541 0.233 H41 A1BDT 77 A1BDT H42 H42 H 0 1 N N N N N N 193.439 192.607 164.314 -15.894 -0.319 -2.573 H42 A1BDT 78 A1BDT H43 H43 H 0 1 N N N N N N 193.787 190.794 140.061 15.915 0.140 -2.578 H43 A1BDT 79 A1BDT H44 H44 H 0 1 N N N N N N 190.758 193.887 138.573 16.386 2.533 0.084 H44 A1BDT 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BDT O38 C3 SING N N 1 A1BDT O37 C4 SING N N 2 A1BDT C3 C4 DOUB Y N 3 A1BDT C3 C2 SING Y N 4 A1BDT C4 C5 SING Y N 5 A1BDT C2 C1 DOUB Y N 6 A1BDT C5 C6 DOUB Y N 7 A1BDT C1 C6 SING Y N 8 A1BDT C6 C7 SING N N 9 A1BDT C7 C8 SING N N 10 A1BDT O10 C9 DOUB N N 11 A1BDT C8 C9 SING N N 12 A1BDT C9 N11 SING N N 13 A1BDT N11 C12 SING N N 14 A1BDT C12 C13 SING N N 15 A1BDT C13 C14 SING N N 16 A1BDT C14 N15 SING N N 17 A1BDT N15 C16 SING N N 18 A1BDT C16 C17 SING N N 19 A1BDT C17 C18 SING N N 20 A1BDT C18 C19 SING N N 21 A1BDT C19 N20 SING N N 22 A1BDT N20 C21 SING N N 23 A1BDT C21 C22 SING N N 24 A1BDT C22 C23 SING N N 25 A1BDT C23 N24 SING N N 26 A1BDT N24 C25 SING N N 27 A1BDT C25 O26 DOUB N N 28 A1BDT C25 C27 SING N N 29 A1BDT C27 C28 SING N N 30 A1BDT C28 C29 SING N N 31 A1BDT C29 C34 DOUB Y N 32 A1BDT C29 C30 SING Y N 33 A1BDT C34 C33 SING Y N 34 A1BDT C30 C31 DOUB Y N 35 A1BDT C33 C32 DOUB Y N 36 A1BDT C31 C32 SING Y N 37 A1BDT C31 O36 SING N N 38 A1BDT C32 O35 SING N N 39 A1BDT C17 H1 SING N N 40 A1BDT C17 H2 SING N N 41 A1BDT C21 H3 SING N N 42 A1BDT C21 H4 SING N N 43 A1BDT C22 H5 SING N N 44 A1BDT C22 H6 SING N N 45 A1BDT C28 H7 SING N N 46 A1BDT C28 H8 SING N N 47 A1BDT C12 H9 SING N N 48 A1BDT C12 H10 SING N N 49 A1BDT C14 H11 SING N N 50 A1BDT C14 H12 SING N N 51 A1BDT C16 H13 SING N N 52 A1BDT C16 H14 SING N N 53 A1BDT C23 H15 SING N N 54 A1BDT C23 H16 SING N N 55 A1BDT N24 H17 SING N N 56 A1BDT C1 H18 SING N N 57 A1BDT C13 H19 SING N N 58 A1BDT C13 H20 SING N N 59 A1BDT C18 H21 SING N N 60 A1BDT C18 H22 SING N N 61 A1BDT C19 H23 SING N N 62 A1BDT C19 H24 SING N N 63 A1BDT C2 H25 SING N N 64 A1BDT C27 H26 SING N N 65 A1BDT C27 H27 SING N N 66 A1BDT C30 H28 SING N N 67 A1BDT C33 H29 SING N N 68 A1BDT C34 H30 SING N N 69 A1BDT C5 H31 SING N N 70 A1BDT C7 H32 SING N N 71 A1BDT C7 H33 SING N N 72 A1BDT C8 H34 SING N N 73 A1BDT C8 H35 SING N N 74 A1BDT N11 H36 SING N N 75 A1BDT N15 H37 SING N N 76 A1BDT N20 H39 SING N N 77 A1BDT O35 H41 SING N N 78 A1BDT O36 H42 SING N N 79 A1BDT O37 H43 SING N N 80 A1BDT O38 H44 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BDT SMILES ACDLabs 14.52 "Oc1ccc(CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(O)c(O)c2)cc1O" A1BDT InChI InChI 1.06 "InChI=1S/C28H42N4O6/c33-23-9-5-21(19-25(23)35)7-11-27(37)31-17-3-15-29-13-1-2-14-30-16-4-18-32-28(38)12-8-22-6-10-24(34)26(36)20-22/h5-6,9-10,19-20,29-30,33-36H,1-4,7-8,11-18H2,(H,31,37)(H,32,38)" A1BDT InChIKey InChI 1.06 IOLDDENZPBFBHV-UHFFFAOYSA-N A1BDT SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(O)c(O)c2)cc1O" A1BDT SMILES CACTVS 3.385 "Oc1ccc(CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(O)c(O)c2)cc1O" A1BDT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(c(c2)O)O)O)O" A1BDT SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CCC(=O)NCCCNCCCCNCCCNC(=O)CCc2ccc(c(c2)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BDT "SYSTEMATIC NAME" ACDLabs 14.52 "N,N'-[butane-1,4-diylbis(azanediylpropane-3,1-diyl)]bis[3-(3,4-dihydroxyphenyl)propanamide]" A1BDT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[3,4-bis(oxidanyl)phenyl]-~{N}-[3-[4-[3-[3-[3,4-bis(oxidanyl)phenyl]propanoylamino]propylamino]butylamino]propyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BDT "Create component" 2024-10-15 RCSB A1BDT "Initial release" 2024-12-11 RCSB #