data_A1BEB # _chem_comp.id A1BEB _chem_comp.name 2-Methyllysine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-25 _chem_comp.pdbx_modified_date 2025-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 160.214 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BEB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9E3Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BEB N N1 N 0 1 N N N Y Y N -7.728 2.020 0.296 1.224 1.416 -0.905 N A1BEB 1 A1BEB CA C1 C 0 1 N N S N Y N -8.902 2.635 0.928 1.246 0.363 0.119 CA A1BEB 2 A1BEB C C2 C 0 1 N N N N Y Y -9.735 3.342 -0.151 2.475 -0.491 -0.064 C A1BEB 3 A1BEB O O1 O 0 1 N N N N Y Y -10.963 3.428 -0.050 2.428 -1.676 0.167 O A1BEB 4 A1BEB CB C3 C 0 1 N N N N N N -8.430 3.640 1.966 -0.004 -0.508 -0.019 CB A1BEB 5 A1BEB CB2 C4 C 0 1 N N N N N N -9.731 1.577 1.636 1.272 1.002 1.509 CB2 A1BEB 6 A1BEB CG C5 C 0 1 N N N N N N -9.580 4.199 2.786 -1.251 0.376 0.043 CG A1BEB 7 A1BEB CD C6 C 0 1 N N N N N N -9.101 5.294 3.720 -2.501 -0.495 -0.095 CD A1BEB 8 A1BEB CE C7 C 0 1 N N N N N N -10.239 5.862 4.554 -3.748 0.390 -0.034 CE A1BEB 9 A1BEB NZ N2 N 0 1 N N N N N N -11.319 6.436 3.706 -4.949 -0.446 -0.166 NZ A1BEB 10 A1BEB OXT O2 O 0 1 N Y N N Y Y -9.059 3.834 -1.186 3.622 0.066 -0.482 OXT A1BEB 11 A1BEB H H1 H 0 1 N N N Y Y N -7.179 1.557 0.992 2.007 2.043 -0.795 H A1BEB 12 A1BEB H2 H2 H 0 1 N N N Y Y N -8.028 1.356 -0.389 1.207 1.018 -1.832 H2 A1BEB 13 A1BEB HB2 H4 H 0 1 N N N N N N -7.720 3.143 2.644 0.022 -1.034 -0.973 HB2 A1BEB 14 A1BEB HB3 H5 H 0 1 N N N N N N -7.925 4.471 1.451 -0.033 -1.234 0.795 HB3 A1BEB 15 A1BEB HB23 H6 H 0 0 N N N N N N -9.118 1.083 2.404 0.383 1.619 1.641 HB23 A1BEB 16 A1BEB HB21 H7 H 0 0 N N N N N N -10.602 2.052 2.112 1.288 0.221 2.268 HB21 A1BEB 17 A1BEB HB22 H8 H 0 0 N N N N N N -10.074 0.830 0.905 2.162 1.623 1.607 HB22 A1BEB 18 A1BEB HG3 H9 H 0 1 N N N N N N -10.339 4.613 2.106 -1.278 0.901 0.997 HG3 A1BEB 19 A1BEB HG2 H10 H 0 1 N N N N N N -10.025 3.388 3.381 -1.222 1.102 -0.771 HG2 A1BEB 20 A1BEB HD3 H11 H 0 1 N N N N N N -8.338 4.878 4.395 -2.475 -1.020 -1.050 HD3 A1BEB 21 A1BEB HD2 H12 H 0 1 N N N N N N -8.659 6.104 3.122 -2.530 -1.220 0.718 HD2 A1BEB 22 A1BEB HE3 H13 H 0 1 N N N N N N -9.841 6.653 5.206 -3.775 0.915 0.921 HE3 A1BEB 23 A1BEB HE2 H14 H 0 1 N N N N N N -10.663 5.057 5.172 -3.719 1.115 -0.847 HE2 A1BEB 24 A1BEB HZ1 H15 H 0 1 N N N N N N -12.046 6.798 4.290 -4.966 -1.168 0.538 HZ1 A1BEB 25 A1BEB HZ2 H16 H 0 1 N N N N N N -10.945 7.174 3.144 -5.786 0.115 -0.129 HZ2 A1BEB 26 A1BEB HXT H18 H 0 1 N N N N Y Y -9.664 4.240 -1.796 4.384 -0.521 -0.585 HXT A1BEB 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BEB C O DOUB N N 1 A1BEB C CA SING N N 2 A1BEB N CA SING N N 3 A1BEB CA CB2 SING N N 4 A1BEB CA CB SING N N 5 A1BEB CB CG SING N N 6 A1BEB CG CD SING N N 7 A1BEB NZ CE SING N N 8 A1BEB CD CE SING N N 9 A1BEB C OXT SING N N 10 A1BEB N H SING N N 11 A1BEB N H2 SING N N 12 A1BEB CB HB2 SING N N 13 A1BEB CB HB3 SING N N 14 A1BEB CB2 HB23 SING N N 15 A1BEB CB2 HB21 SING N N 16 A1BEB CB2 HB22 SING N N 17 A1BEB CG HG3 SING N N 18 A1BEB CG HG2 SING N N 19 A1BEB CD HD3 SING N N 20 A1BEB CD HD2 SING N N 21 A1BEB CE HE3 SING N N 22 A1BEB CE HE2 SING N N 23 A1BEB NZ HZ1 SING N N 24 A1BEB NZ HZ2 SING N N 25 A1BEB OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BEB SMILES ACDLabs 14.52 "NC(C)(CCCCN)C(=O)O" A1BEB InChI InChI 1.06 "InChI=1S/C7H16N2O2/c1-7(9,6(10)11)4-2-3-5-8/h2-5,8-9H2,1H3,(H,10,11)/t7-/m0/s1" A1BEB InChIKey InChI 1.06 CPUSCHYXEUZMSV-ZETCQYMHSA-N A1BEB SMILES_CANONICAL CACTVS 3.385 "C[C@](N)(CCCCN)C(O)=O" A1BEB SMILES CACTVS 3.385 "C[C](N)(CCCCN)C(O)=O" A1BEB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@](CCCCN)(C(=O)O)N" A1BEB SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(CCCCN)(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BEB "SYSTEMATIC NAME" ACDLabs 14.52 2-methyl-L-lysine A1BEB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2,6-bis(azanyl)-2-methyl-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BEB "Create component" 2024-10-25 RCSB A1BEB "Modify atom id" 2025-01-02 RCSB A1BEB "Initial release" 2025-01-08 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BEB _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #