data_A1BEI
#
_chem_comp.id A1BEI
_chem_comp.name "methyl 3-[(7M)-1-[(1R,4R,5S)-2-azabicyclo[2.1.1]hexan-5-yl]-8-(2-cyanoethyl)-4-[3-(dimethylamino)azetidin-1-yl]-6-fluoro-7-(3-hydroxynaphthalen-1-yl)-1H-imidazo[4,5-c]quinolin-2-yl]propanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H38 F N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-10-29
_chem_comp.pdbx_modified_date 2025-01-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 647.741
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1BEI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9E5D
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1BEI C1 C1 C 0 1 N N N N N N -30.108 -5.139 -19.374 8.852 -2.179 2.407 C1 A1BEI 1
A1BEI O1 O1 O 0 1 N N N N N N -29.658 -4.993 -20.756 7.574 -1.491 2.376 O1 A1BEI 2
A1BEI N2 N1 N 0 1 Y N N N N N -22.406 -6.004 -22.937 -0.051 2.174 -0.860 N2 A1BEI 3
A1BEI C2 C2 C 0 1 N N N N N N -28.727 -4.106 -21.013 6.928 -1.458 1.199 C2 A1BEI 4
A1BEI O2 O2 O 0 1 N N N N N N -28.084 -3.555 -20.160 7.415 -1.987 0.228 O2 A1BEI 5
A1BEI O3 O3 O 0 1 N N N N N N -16.697 -3.693 -28.083 -6.995 -1.041 -2.248 O3 A1BEI 6
A1BEI C3 C3 C 0 1 N N N N N N -28.625 -3.870 -22.486 5.596 -0.761 1.090 C3 A1BEI 7
A1BEI C4 C4 C 0 1 N N N N N N -27.514 -2.882 -22.793 5.081 -0.869 -0.346 C4 A1BEI 8
A1BEI C5 C5 C 0 1 Y N N N N N -26.159 -3.491 -22.749 3.698 -0.275 -0.430 C5 A1BEI 9
A1BEI N1 N2 N 0 1 Y N N N N N -25.903 -4.758 -22.548 3.433 0.966 -0.718 N1 A1BEI 10
A1BEI C6 C6 C 0 1 Y N N N N N -24.555 -4.936 -22.782 2.092 1.157 -0.706 C6 A1BEI 11
A1BEI C7 C7 C 0 1 Y N N N N N -23.738 -6.080 -22.691 1.257 2.275 -0.940 C7 A1BEI 12
A1BEI C8 C8 C 0 1 Y N N N N N -21.883 -4.841 -23.467 -0.662 1.018 -0.555 C8 A1BEI 13
A1BEI C9 C9 C 0 1 Y N N N N N -20.531 -4.829 -23.878 -2.061 0.950 -0.479 C9 A1BEI 14
A1BEI F1 F1 F 0 1 N N N N N N -19.789 -5.906 -23.652 -2.809 2.051 -0.714 F1 A1BEI 15
A1BEI C10 C10 C 0 1 Y N N N N N -19.969 -3.718 -24.510 -2.674 -0.255 -0.161 C10 A1BEI 16
A1BEI C11 C11 C 0 1 Y N N N N N -20.751 -2.566 -24.776 -1.904 -1.401 0.083 C11 A1BEI 17
A1BEI C12 C12 C 0 1 N N N N N N -20.177 -1.305 -25.413 -2.587 -2.700 0.427 C12 A1BEI 18
A1BEI C13 C13 C 0 1 N N N N N N -19.183 -0.573 -24.506 -2.990 -3.421 -0.861 C13 A1BEI 19
A1BEI C14 C14 C 0 1 N N N N N N -19.629 -0.468 -23.109 -3.657 -4.689 -0.525 C14 A1BEI 20
A1BEI N3 N3 N 0 1 N N N N N N -19.963 -0.477 -22.021 -4.172 -5.668 -0.266 N3 A1BEI 21
A1BEI C15 C15 C 0 1 Y N N N N N -22.033 -2.550 -24.289 -0.546 -1.352 0.013 C15 A1BEI 22
A1BEI C16 C16 C 0 1 Y N N N N N -22.643 -3.647 -23.624 0.099 -0.149 -0.306 C16 A1BEI 23
A1BEI C17 C17 C 0 1 Y N N N N N -24.004 -3.734 -23.181 1.508 -0.071 -0.385 C17 A1BEI 24
A1BEI N4 N4 N 0 1 Y N N N N N -25.024 -2.799 -23.139 2.540 -0.956 -0.215 N4 A1BEI 25
A1BEI C18 C18 C 0 1 N N S N N N -24.828 -1.373 -23.104 2.418 -2.374 0.133 C18 A1BEI 26
A1BEI C19 C19 C 0 1 N N R N N N -25.604 -0.421 -22.129 1.592 -3.214 -0.877 C19 A1BEI 27
A1BEI C20 C20 C 0 1 N N N N N N -25.431 -1.035 -20.743 2.249 -2.813 -2.242 C20 A1BEI 28
A1BEI N5 N5 N 0 1 N N N N N N -23.996 -1.412 -20.805 3.689 -2.862 -1.839 N5 A1BEI 29
A1BEI C21 C21 C 0 1 N N R N N N -23.644 -0.841 -22.126 3.569 -3.265 -0.397 C21 A1BEI 30
A1BEI C22 C22 C 0 1 N N N N N N -24.384 0.517 -22.138 2.469 -4.361 -0.285 C22 A1BEI 31
A1BEI C23 C23 C 0 1 Y N N N N N -18.521 -3.759 -24.934 -4.150 -0.329 -0.080 C23 A1BEI 32
A1BEI C24 C24 C 0 1 Y N N N N N -18.212 -3.772 -26.287 -4.894 -0.651 -1.201 C24 A1BEI 33
A1BEI C25 C25 C 0 1 Y N N N N N -16.894 -3.680 -26.748 -6.286 -0.724 -1.133 C25 A1BEI 34
A1BEI C26 C26 C 0 1 Y N N N N N -15.865 -3.545 -25.843 -6.950 -0.478 0.047 C26 A1BEI 35
A1BEI C27 C27 C 0 1 Y N N N N N -16.119 -3.518 -24.443 -6.224 -0.148 1.204 C27 A1BEI 36
A1BEI C28 C28 C 0 1 Y N N N N N -15.074 -3.364 -23.487 -6.877 0.107 2.423 C28 A1BEI 37
A1BEI C29 C29 C 0 1 Y N N N N N -15.340 -3.232 -22.144 -6.145 0.423 3.526 C29 A1BEI 38
A1BEI C30 C30 C 0 1 Y N N N N N -16.669 -3.315 -21.668 -4.755 0.497 3.467 C30 A1BEI 39
A1BEI C31 C31 C 0 1 Y N N N N N -17.682 -3.532 -22.542 -4.090 0.256 2.303 C31 A1BEI 40
A1BEI C32 C32 C 0 1 Y N N N N N -17.470 -3.613 -23.956 -4.811 -0.078 1.147 C32 A1BEI 41
A1BEI N6 N6 N 0 1 N N N N N N -24.272 -7.270 -22.232 1.828 3.496 -1.259 N6 A1BEI 42
A1BEI C33 C33 C 0 1 N N N N N N -25.647 -7.722 -21.974 0.793 4.526 -1.464 C33 A1BEI 43
A1BEI C34 C34 C 0 1 N N N N N N -25.170 -9.144 -22.258 1.693 5.504 -0.696 C34 A1BEI 44
A1BEI C35 C35 C 0 1 N N N N N N -23.729 -8.626 -22.380 2.233 4.224 -0.043 C35 A1BEI 45
A1BEI N7 N7 N 0 1 N N N N N N -25.741 -9.771 -23.457 0.969 6.394 0.221 N7 A1BEI 46
A1BEI C36 C36 C 0 1 N N N N N N -27.192 -10.052 -23.403 1.894 7.298 0.918 C36 A1BEI 47
A1BEI C37 C37 C 0 1 N N N N N N -25.044 -11.039 -23.814 -0.071 7.150 -0.490 C37 A1BEI 48
A1BEI H1 H1 H 0 1 N N N N N N -30.885 -5.916 -19.321 8.710 -3.222 2.122 H1 A1BEI 49
A1BEI H2 H2 H 0 1 N N N N N N -29.257 -5.428 -18.740 9.539 -1.702 1.709 H2 A1BEI 50
A1BEI H3 H3 H 0 1 N N N N N N -30.521 -4.183 -19.020 9.266 -2.132 3.414 H3 A1BEI 51
A1BEI H4 H4 H 0 1 N N N N N N -15.767 -3.625 -28.267 -7.145 -1.990 -2.362 H4 A1BEI 52
A1BEI H5 H5 H 0 1 N N N N N N -29.580 -3.466 -22.854 4.884 -1.230 1.768 H5 A1BEI 53
A1BEI H6 H6 H 0 1 N N N N N N -28.411 -4.823 -22.991 5.713 0.290 1.356 H6 A1BEI 54
A1BEI H7 H7 H 0 1 N N N N N N -27.556 -2.069 -22.054 5.750 -0.327 -1.015 H7 A1BEI 55
A1BEI H8 H8 H 0 1 N N N N N N -27.680 -2.471 -23.800 5.044 -1.918 -0.641 H8 A1BEI 56
A1BEI H9 H9 H 0 1 N N N N N N -19.661 -1.586 -26.343 -1.904 -3.329 0.998 H9 A1BEI 57
A1BEI H10 H10 H 0 1 N N N N N N -21.007 -0.622 -25.646 -3.477 -2.496 1.023 H10 A1BEI 58
A1BEI H11 H11 H 0 1 N N N N N N -18.227 -1.118 -24.526 -3.672 -2.791 -1.431 H11 A1BEI 59
A1BEI H12 H12 H 0 1 N N N N N N -19.034 0.443 -24.901 -2.100 -3.625 -1.456 H12 A1BEI 60
A1BEI H13 H13 H 0 1 N N N N N N -22.614 -1.649 -24.419 0.036 -2.241 0.203 H13 A1BEI 61
A1BEI H14 H14 H 0 1 N N N N N N -24.730 -0.925 -24.104 2.160 -2.544 1.178 H14 A1BEI 62
A1BEI H15 H15 H 0 1 N N N N N N -26.587 -0.033 -22.435 0.504 -3.255 -0.816 H15 A1BEI 63
A1BEI H16 H16 H 0 1 N N N N N N -25.627 -0.303 -19.945 2.028 -3.544 -3.020 H16 A1BEI 64
A1BEI H17 H17 H 0 1 N N N N N N -26.078 -1.913 -20.602 1.953 -1.810 -2.547 H17 A1BEI 65
A1BEI H18 H18 H 0 1 N N N N N N -23.870 -2.404 -20.783 4.120 -1.954 -1.926 H18 A1BEI 66
A1BEI H20 H20 H 0 1 N N N N N N -22.611 -0.892 -22.501 4.490 -3.363 0.178 H20 A1BEI 67
A1BEI H21 H21 H 0 1 N N N N N N -24.253 1.130 -23.042 2.214 -4.644 0.737 H21 A1BEI 68
A1BEI H22 H22 H 0 1 N N N N N N -24.252 1.146 -21.246 2.609 -5.213 -0.951 H22 A1BEI 69
A1BEI H23 H23 H 0 1 N N N N N N -19.013 -3.856 -27.006 -4.393 -0.847 -2.137 H23 A1BEI 70
A1BEI H24 H24 H 0 1 N N N N N N -14.850 -3.458 -26.201 -8.028 -0.537 0.084 H24 A1BEI 71
A1BEI H25 H25 H 0 1 N N N N N N -14.048 -3.351 -23.825 -7.954 0.053 2.483 H25 A1BEI 72
A1BEI H26 H26 H 0 1 N N N N N N -14.530 -3.064 -21.450 -6.649 0.619 4.461 H26 A1BEI 73
A1BEI H27 H27 H 0 1 N N N N N N -16.876 -3.206 -20.614 -4.197 0.750 4.356 H27 A1BEI 74
A1BEI H28 H28 H 0 1 N N N N N N -18.685 -3.648 -22.158 -3.012 0.317 2.271 H28 A1BEI 75
A1BEI H29 H29 H 0 1 N N N N N N -26.395 -7.340 -22.684 0.651 4.797 -2.511 H29 A1BEI 76
A1BEI H30 H30 H 0 1 N N N N N N -25.998 -7.554 -20.945 -0.145 4.306 -0.955 H30 A1BEI 77
A1BEI H31 H31 H 0 1 N N N N N N -25.283 -9.782 -21.369 2.418 6.027 -1.320 H31 A1BEI 78
A1BEI H32 H32 H 0 1 N N N N N N -23.058 -8.942 -21.568 1.679 3.924 0.847 H32 A1BEI 79
A1BEI H33 H33 H 0 1 N N N N N N -23.251 -8.825 -23.350 3.311 4.239 0.116 H33 A1BEI 80
A1BEI H35 H35 H 0 1 N N N N N N -27.735 -9.132 -23.141 2.426 7.907 0.187 H35 A1BEI 81
A1BEI H36 H36 H 0 1 N N N N N N -27.533 -10.411 -24.385 1.332 7.945 1.590 H36 A1BEI 82
A1BEI H37 H37 H 0 1 N N N N N N -27.388 -10.822 -22.643 2.611 6.711 1.492 H37 A1BEI 83
A1BEI H38 H38 H 0 1 N N N N N N -23.960 -10.861 -23.862 0.390 7.754 -1.271 H38 A1BEI 84
A1BEI H39 H39 H 0 1 N N N N N N -25.257 -11.802 -23.051 -0.782 6.456 -0.938 H39 A1BEI 85
A1BEI H40 H40 H 0 1 N N N N N N -25.401 -11.391 -24.793 -0.591 7.801 0.213 H40 A1BEI 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1BEI O3 C25 SING N N 1
A1BEI C25 C24 DOUB Y N 2
A1BEI C25 C26 SING Y N 3
A1BEI C24 C23 SING Y N 4
A1BEI C26 C27 DOUB Y N 5
A1BEI C12 C11 SING N N 6
A1BEI C12 C13 SING N N 7
A1BEI C23 C10 SING N N 8
A1BEI C23 C32 DOUB Y N 9
A1BEI C11 C10 DOUB Y N 10
A1BEI C11 C15 SING Y N 11
A1BEI C10 C9 SING Y N 12
A1BEI C13 C14 SING N N 13
A1BEI C27 C32 SING Y N 14
A1BEI C27 C28 SING Y N 15
A1BEI C15 C16 DOUB Y N 16
A1BEI C32 C31 SING Y N 17
A1BEI C9 F1 SING N N 18
A1BEI C9 C8 DOUB Y N 19
A1BEI C37 N7 SING N N 20
A1BEI C16 C8 SING Y N 21
A1BEI C16 C17 SING Y N 22
A1BEI C28 C29 DOUB Y N 23
A1BEI C8 N2 SING Y N 24
A1BEI N7 C36 SING N N 25
A1BEI N7 C34 SING N N 26
A1BEI C17 N4 SING Y N 27
A1BEI C17 C6 DOUB Y N 28
A1BEI N4 C18 SING N N 29
A1BEI N4 C5 SING Y N 30
A1BEI C14 N3 TRIP N N 31
A1BEI C18 C19 SING N N 32
A1BEI C18 C21 SING N N 33
A1BEI N2 C7 DOUB Y N 34
A1BEI C4 C5 SING N N 35
A1BEI C4 C3 SING N N 36
A1BEI C6 C7 SING Y N 37
A1BEI C6 N1 SING Y N 38
A1BEI C5 N1 DOUB Y N 39
A1BEI C7 N6 SING N N 40
A1BEI C31 C30 DOUB Y N 41
A1BEI C3 C2 SING N N 42
A1BEI C35 C34 SING N N 43
A1BEI C35 N6 SING N N 44
A1BEI C34 C33 SING N N 45
A1BEI N6 C33 SING N N 46
A1BEI C29 C30 SING Y N 47
A1BEI C22 C19 SING N N 48
A1BEI C22 C21 SING N N 49
A1BEI C19 C20 SING N N 50
A1BEI C21 N5 SING N N 51
A1BEI C2 O1 SING N N 52
A1BEI C2 O2 DOUB N N 53
A1BEI N5 C20 SING N N 54
A1BEI O1 C1 SING N N 55
A1BEI C1 H1 SING N N 56
A1BEI C1 H2 SING N N 57
A1BEI C1 H3 SING N N 58
A1BEI O3 H4 SING N N 59
A1BEI C3 H5 SING N N 60
A1BEI C3 H6 SING N N 61
A1BEI C4 H7 SING N N 62
A1BEI C4 H8 SING N N 63
A1BEI C12 H9 SING N N 64
A1BEI C12 H10 SING N N 65
A1BEI C13 H11 SING N N 66
A1BEI C13 H12 SING N N 67
A1BEI C15 H13 SING N N 68
A1BEI C18 H14 SING N N 69
A1BEI C19 H15 SING N N 70
A1BEI C20 H16 SING N N 71
A1BEI C20 H17 SING N N 72
A1BEI N5 H18 SING N N 73
A1BEI C21 H20 SING N N 74
A1BEI C22 H21 SING N N 75
A1BEI C22 H22 SING N N 76
A1BEI C24 H23 SING N N 77
A1BEI C26 H24 SING N N 78
A1BEI C28 H25 SING N N 79
A1BEI C29 H26 SING N N 80
A1BEI C30 H27 SING N N 81
A1BEI C31 H28 SING N N 82
A1BEI C33 H29 SING N N 83
A1BEI C33 H30 SING N N 84
A1BEI C34 H31 SING N N 85
A1BEI C35 H32 SING N N 86
A1BEI C35 H33 SING N N 87
A1BEI C36 H35 SING N N 88
A1BEI C36 H36 SING N N 89
A1BEI C36 H37 SING N N 90
A1BEI C37 H38 SING N N 91
A1BEI C37 H39 SING N N 92
A1BEI C37 H40 SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1BEI SMILES ACDLabs 14.52 "CN(C)C1CN(C1)c1nc2c(F)c(c3cc(O)cc4ccccc43)c(CCC#N)cc2c2c1nc(CCC(=O)OC)n2C1C2CC1NC2"
A1BEI InChI InChI 1.06 "InChI=1S/C37H38FN7O3/c1-43(2)23-18-44(19-23)37-34-36(45(35-22-15-28(35)40-17-22)29(41-34)10-11-30(47)48-3)27-14-21(8-6-12-39)31(32(38)33(27)42-37)26-16-24(46)13-20-7-4-5-9-25(20)26/h4-5,7,9,13-14,16,22-23,28,35,40,46H,6,8,10-11,15,17-19H2,1-3H3/t22-,28-,35+/m1/s1"
A1BEI InChIKey InChI 1.06 APCQXEIKSDWIBA-BLLMFBIISA-N
A1BEI SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCc1nc2c(nc3c(F)c(c(CCC#N)cc3c2n1[C@H]4[C@H]5CN[C@@H]4C5)c6cc(O)cc7ccccc67)N8C[C@H](C8)N(C)C"
A1BEI SMILES CACTVS 3.385 "COC(=O)CCc1nc2c(nc3c(F)c(c(CCC#N)cc3c2n1[CH]4[CH]5CN[CH]4C5)c6cc(O)cc7ccccc67)N8C[CH](C8)N(C)C"
A1BEI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN(C)C1CN(C1)c2c3c(c4cc(c(c(c4n2)F)c5cc(cc6c5cccc6)O)CCC#N)n(c(n3)CCC(=O)OC)[C@H]7[C@@H]8C[C@H]7NC8"
A1BEI SMILES "OpenEye OEToolkits" 3.1.0.0 "CN(C)C1CN(C1)c2c3c(c4cc(c(c(c4n2)F)c5cc(cc6c5cccc6)O)CCC#N)n(c(n3)CCC(=O)OC)C7C8CC7NC8"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1BEI "SYSTEMATIC NAME" ACDLabs 14.52 "methyl 3-[(7M)-1-[(1R,4R,5S)-2-azabicyclo[2.1.1]hexan-5-yl]-8-(2-cyanoethyl)-4-[3-(dimethylamino)azetidin-1-yl]-6-fluoro-7-(3-hydroxynaphthalen-1-yl)-1H-imidazo[4,5-c]quinolin-2-yl]propanoate"
A1BEI "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "methyl 3-[1-[(1~{R},4~{R},5~{S})-2-azabicyclo[2.1.1]hexan-5-yl]-8-(2-cyanoethyl)-4-[3-(dimethylamino)azetidin-1-yl]-6-fluoranyl-7-(3-oxidanylnaphthalen-1-yl)imidazo[4,5-c]quinolin-2-yl]propanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1BEI "Create component" 2024-10-29 RCSB
A1BEI "Initial release" 2025-01-22 RCSB
#