data_A1BEJ
#
_chem_comp.id A1BEJ
_chem_comp.name "(4P)-4-{1-[(1R,4R,5S)-2-azabicyclo[2.1.1]hexan-5-yl]-8-chloro-4-[3-(dimethylamino)azetidin-1-yl]-6-fluoro-1H-imidazo[4,5-c]quinolin-7-yl}naphthalen-2-ol"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H28 Cl F N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-10-29
_chem_comp.pdbx_modified_date 2025-01-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 543.034
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1BEJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9E5F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1BEJ C1 C1 C 0 1 N N N N N N 25.080 10.896 -24.186 -4.412 5.914 -1.207 C1 A1BEJ 1
A1BEJ O1 O1 O 0 1 N N N N N N 16.729 3.520 -28.356 5.854 -0.006 3.066 O1 A1BEJ 2
A1BEJ N2 N1 N 0 1 N N N N N N 24.311 7.093 -22.616 -3.621 2.092 0.784 N2 A1BEJ 3
A1BEJ C2 C2 C 0 1 N N N N N N 27.237 9.889 -23.693 -2.714 6.172 0.500 C2 A1BEJ 4
A1BEJ C3 C3 C 0 1 N N N N N N 25.235 8.976 -22.660 -3.964 4.105 0.339 C3 A1BEJ 5
A1BEJ N1 N2 N 0 1 N N N N N N 25.796 9.622 -23.869 -3.387 5.232 -0.406 N1 A1BEJ 6
A1BEJ C4 C4 C 0 1 N N N N N N 25.698 7.522 -22.392 -2.953 3.339 1.203 C4 A1BEJ 7
A1BEJ C5 C5 C 0 1 N N N N N N 23.816 8.462 -22.825 -4.026 2.790 -0.450 C5 A1BEJ 8
A1BEJ C6 C6 C 0 1 Y N N N N N 23.810 5.902 -23.084 -2.693 1.099 0.512 C6 A1BEJ 9
A1BEJ N3 N3 N 0 1 Y N N N N N 22.513 5.825 -23.382 -1.412 1.356 0.651 N3 A1BEJ 10
A1BEJ C7 C7 C 0 1 Y N N N N N 21.998 4.631 -23.860 -0.467 0.433 0.407 C7 A1BEJ 11
A1BEJ C8 C8 C 0 1 Y N N N N N 20.661 4.606 -24.296 0.892 0.746 0.567 C8 A1BEJ 12
A1BEJ F1 F1 F 0 1 N N N N N N 19.898 5.680 -24.082 1.262 1.981 0.970 F1 A1BEJ 13
A1BEJ C9 C9 C 0 1 Y N N N N N 20.080 3.484 -24.888 1.854 -0.221 0.310 C9 A1BEJ 14
A1BEJ C10 C10 C 0 1 Y N N N N N 20.885 2.352 -25.067 1.476 -1.507 -0.108 C10 A1BEJ 15
A1BEJ CL1 CL1 CL 0 0 N N N N N N 20.269 0.958 -25.867 2.695 -2.701 -0.424 CL1 A1BEJ 16
A1BEJ C11 C11 C 0 1 Y N N N N N 22.172 2.327 -24.598 0.162 -1.825 -0.268 C11 A1BEJ 17
A1BEJ C12 C12 C 0 1 Y N N N N N 22.753 3.435 -23.970 -0.830 -0.868 -0.015 C12 A1BEJ 18
A1BEJ C13 C13 C 0 1 Y N N N N N 24.100 3.539 -23.488 -2.201 -1.173 -0.174 C13 A1BEJ 19
A1BEJ C14 C14 C 0 1 Y N N N N N 24.637 4.762 -23.081 -3.142 -0.175 0.094 C14 A1BEJ 20
A1BEJ N4 N4 N 0 1 Y N N N N N 25.960 4.579 -22.691 -4.364 -0.716 -0.127 N4 A1BEJ 21
A1BEJ C15 C15 C 0 1 Y N N N N N 26.168 3.295 -22.830 -4.230 -1.953 -0.509 C15 A1BEJ 22
A1BEJ N5 N5 N 0 1 Y N N N N N 25.080 2.604 -23.320 -2.910 -2.282 -0.553 N5 A1BEJ 23
A1BEJ C16 C16 C 0 1 N N S N N N 24.862 1.181 -23.256 -2.351 -3.582 -0.933 C16 A1BEJ 24
A1BEJ C17 C17 C 0 1 N N R N N N 25.699 0.274 -22.306 -1.690 -4.361 0.234 C17 A1BEJ 25
A1BEJ C18 C18 C 0 1 N N N N N N 25.505 0.878 -20.919 -2.803 -4.297 1.335 C18 A1BEJ 26
A1BEJ N6 N6 N 0 1 N N N N N N 24.077 1.204 -21.012 -3.999 -4.589 0.485 N6 A1BEJ 27
A1BEJ C19 C19 C 0 1 N N R N N N 23.716 0.629 -22.331 -3.358 -4.757 -0.863 C19 A1BEJ 28
A1BEJ C20 C20 C 0 1 N N N N N N 24.501 -0.701 -22.319 -2.044 -5.573 -0.682 C20 A1BEJ 29
A1BEJ C21 C21 C 0 1 Y N N N N N 18.637 3.460 -25.281 3.288 0.106 0.477 C21 A1BEJ 30
A1BEJ C22 C22 C 0 1 Y N N N N N 18.262 3.537 -26.594 3.912 -0.101 1.694 C22 A1BEJ 31
A1BEJ C23 C23 C 0 1 Y N N N N N 16.948 3.438 -27.020 5.263 0.205 1.861 C23 A1BEJ 32
A1BEJ C24 C24 C 0 1 Y N N N N N 15.954 3.270 -26.095 6.005 0.718 0.820 C24 A1BEJ 33
A1BEJ C25 C25 C 0 1 Y N N N N N 16.265 3.168 -24.709 5.402 0.939 -0.429 C25 A1BEJ 34
A1BEJ C26 C26 C 0 1 Y N N N N N 15.238 2.970 -23.730 6.136 1.461 -1.508 C26 A1BEJ 35
A1BEJ C27 C27 C 0 1 Y N N N N N 15.552 2.807 -22.414 5.522 1.664 -2.705 C27 A1BEJ 36
A1BEJ C28 C28 C 0 1 Y N N N N N 16.873 2.924 -21.971 4.174 1.361 -2.879 C28 A1BEJ 37
A1BEJ C29 C29 C 0 1 Y N N N N N 17.869 3.137 -22.867 3.432 0.854 -1.856 C29 A1BEJ 38
A1BEJ C30 C30 C 0 1 Y N N N N N 17.622 3.251 -24.280 4.032 0.627 -0.609 C30 A1BEJ 39
A1BEJ H1 H1 H 0 1 N N N N N N 24.007 10.692 -24.316 -3.958 6.744 -1.748 H1 A1BEJ 40
A1BEJ H2 H2 H 0 1 N N N N N N 25.220 11.610 -23.361 -4.846 5.210 -1.917 H2 A1BEJ 41
A1BEJ H3 H3 H 0 1 N N N N N N 25.487 11.324 -25.114 -5.194 6.294 -0.549 H3 A1BEJ 42
A1BEJ H4 H4 H 0 1 N N N N N N 15.799 3.440 -28.530 6.241 -0.886 3.166 H4 A1BEJ 43
A1BEJ H5 H5 H 0 1 N N N N N N 27.759 8.949 -23.460 -3.447 6.615 1.174 H5 A1BEJ 44
A1BEJ H6 H6 H 0 1 N N N N N N 27.647 10.316 -24.620 -1.960 5.641 1.080 H6 A1BEJ 45
A1BEJ H7 H7 H 0 1 N N N N N N 27.380 10.602 -22.867 -2.236 6.959 -0.084 H7 A1BEJ 46
A1BEJ H8 H8 H 0 1 N N N N N N 25.341 9.603 -21.762 -4.890 4.359 0.856 H8 A1BEJ 47
A1BEJ H10 H10 H 0 1 N N N N N N 26.421 7.131 -23.123 -3.047 3.545 2.269 H10 A1BEJ 48
A1BEJ H11 H11 H 0 1 N N N N N N 26.073 7.342 -21.374 -1.926 3.422 0.846 H11 A1BEJ 49
A1BEJ H12 H12 H 0 1 N N N N N N 23.115 8.812 -22.053 -3.286 2.727 -1.248 H12 A1BEJ 50
A1BEJ H13 H13 H 0 1 N N N N N N 23.383 8.640 -23.821 -5.031 2.531 -0.785 H13 A1BEJ 51
A1BEJ H14 H14 H 0 1 N N N N N N 22.755 1.426 -24.716 -0.117 -2.818 -0.590 H14 A1BEJ 52
A1BEJ H15 H15 H 0 1 N N N N N N 27.106 2.820 -22.584 -5.044 -2.620 -0.752 H15 A1BEJ 53
A1BEJ H16 H16 H 0 1 N N N N N N 24.793 0.728 -24.256 -1.759 -3.549 -1.847 H16 A1BEJ 54
A1BEJ H17 H17 H 0 1 N N N N N N 26.692 -0.075 -22.625 -0.658 -4.165 0.527 H17 A1BEJ 55
A1BEJ H18 H18 H 0 1 N N N N N N 25.712 0.151 -20.119 -2.658 -5.065 2.095 H18 A1BEJ 56
A1BEJ H19 H19 H 0 1 N N N N N N 26.124 1.775 -20.769 -2.865 -3.305 1.783 H19 A1BEJ 57
A1BEJ H20 H20 H 0 1 N N N N N N 23.928 2.193 -20.993 -4.642 -3.811 0.486 H20 A1BEJ 58
A1BEJ H22 H22 H 0 1 N N N N N N 22.678 0.647 -22.694 -4.004 -4.971 -1.714 H22 A1BEJ 59
A1BEJ H23 H23 H 0 1 N N N N N N 24.378 -1.325 -21.421 -1.434 -5.654 -1.581 H23 A1BEJ 60
A1BEJ H24 H24 H 0 1 N N N N N N 24.400 -1.328 -23.217 -2.168 -6.518 -0.154 H24 A1BEJ 61
A1BEJ H25 H25 H 0 1 N N N N N N 19.031 3.683 -27.338 3.348 -0.502 2.523 H25 A1BEJ 62
A1BEJ H26 H26 H 0 1 N N N N N N 14.925 3.214 -26.419 7.050 0.950 0.965 H26 A1BEJ 63
A1BEJ H27 H27 H 0 1 N N N N N N 14.203 2.950 -24.038 7.183 1.701 -1.387 H27 A1BEJ 64
A1BEJ H28 H28 H 0 1 N N N N N N 14.770 2.584 -21.703 6.089 2.066 -3.533 H28 A1BEJ 65
A1BEJ H29 H29 H 0 1 N N N N N N 17.100 2.845 -20.918 3.710 1.531 -3.840 H29 A1BEJ 66
A1BEJ H30 H30 H 0 1 N N N N N N 18.883 3.224 -22.507 2.387 0.625 -2.005 H30 A1BEJ 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1BEJ O1 C23 SING N N 1
A1BEJ C23 C22 DOUB Y N 2
A1BEJ C23 C24 SING Y N 3
A1BEJ C22 C21 SING Y N 4
A1BEJ C24 C25 DOUB Y N 5
A1BEJ CL1 C10 SING N N 6
A1BEJ C21 C9 SING N N 7
A1BEJ C21 C30 DOUB Y N 8
A1BEJ C10 C9 DOUB Y N 9
A1BEJ C10 C11 SING Y N 10
A1BEJ C9 C8 SING Y N 11
A1BEJ C25 C30 SING Y N 12
A1BEJ C25 C26 SING Y N 13
A1BEJ C11 C12 DOUB Y N 14
A1BEJ C8 F1 SING N N 15
A1BEJ C8 C7 DOUB Y N 16
A1BEJ C30 C29 SING Y N 17
A1BEJ C1 N1 SING N N 18
A1BEJ C12 C7 SING Y N 19
A1BEJ C12 C13 SING Y N 20
A1BEJ N1 C2 SING N N 21
A1BEJ N1 C3 SING N N 22
A1BEJ C7 N3 SING Y N 23
A1BEJ C26 C27 DOUB Y N 24
A1BEJ C13 N5 SING Y N 25
A1BEJ C13 C14 DOUB Y N 26
A1BEJ N3 C6 DOUB Y N 27
A1BEJ N5 C16 SING N N 28
A1BEJ N5 C15 SING Y N 29
A1BEJ C16 C19 SING N N 30
A1BEJ C16 C17 SING N N 31
A1BEJ C6 C14 SING Y N 32
A1BEJ C6 N2 SING N N 33
A1BEJ C14 N4 SING Y N 34
A1BEJ C29 C28 DOUB Y N 35
A1BEJ C15 N4 DOUB Y N 36
A1BEJ C5 C3 SING N N 37
A1BEJ C5 N2 SING N N 38
A1BEJ C3 C4 SING N N 39
A1BEJ N2 C4 SING N N 40
A1BEJ C27 C28 SING Y N 41
A1BEJ C19 C20 SING N N 42
A1BEJ C19 N6 SING N N 43
A1BEJ C20 C17 SING N N 44
A1BEJ C17 C18 SING N N 45
A1BEJ N6 C18 SING N N 46
A1BEJ C1 H1 SING N N 47
A1BEJ C1 H2 SING N N 48
A1BEJ C1 H3 SING N N 49
A1BEJ O1 H4 SING N N 50
A1BEJ C2 H5 SING N N 51
A1BEJ C2 H6 SING N N 52
A1BEJ C2 H7 SING N N 53
A1BEJ C3 H8 SING N N 54
A1BEJ C4 H10 SING N N 55
A1BEJ C4 H11 SING N N 56
A1BEJ C5 H12 SING N N 57
A1BEJ C5 H13 SING N N 58
A1BEJ C11 H14 SING N N 59
A1BEJ C15 H15 SING N N 60
A1BEJ C16 H16 SING N N 61
A1BEJ C17 H17 SING N N 62
A1BEJ C18 H18 SING N N 63
A1BEJ C18 H19 SING N N 64
A1BEJ N6 H20 SING N N 65
A1BEJ C19 H22 SING N N 66
A1BEJ C20 H23 SING N N 67
A1BEJ C20 H24 SING N N 68
A1BEJ C22 H25 SING N N 69
A1BEJ C24 H26 SING N N 70
A1BEJ C26 H27 SING N N 71
A1BEJ C27 H28 SING N N 72
A1BEJ C28 H29 SING N N 73
A1BEJ C29 H30 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1BEJ SMILES ACDLabs 14.52 "Oc1cc2ccccc2c(c1)c1c(F)c2nc(c3ncn(C4C5CC4NC5)c3c2cc1Cl)N1CC(C1)N(C)C"
A1BEJ InChI InChI 1.06 "InChI=1S/C30H28ClFN6O/c1-36(2)17-12-37(13-17)30-27-29(38(14-34-27)28-16-8-23(28)33-11-16)21-10-22(31)24(25(32)26(21)35-30)20-9-18(39)7-15-5-3-4-6-19(15)20/h3-7,9-10,14,16-17,23,28,33,39H,8,11-13H2,1-2H3/t16-,23-,28+/m1/s1"
A1BEJ InChIKey InChI 1.06 OAOCNUDAFDIMDI-VXOHWXBUSA-N
A1BEJ SMILES_CANONICAL CACTVS 3.385 "CN(C)[C@@H]1CN(C1)c2nc3c(F)c(c(Cl)cc3c4n(cnc24)[C@H]5[C@H]6CN[C@@H]5C6)c7cc(O)cc8ccccc78"
A1BEJ SMILES CACTVS 3.385 "CN(C)[CH]1CN(C1)c2nc3c(F)c(c(Cl)cc3c4n(cnc24)[CH]5[CH]6CN[CH]5C6)c7cc(O)cc8ccccc78"
A1BEJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN(C)C1CN(C1)c2c3c(c4cc(c(c(c4n2)F)c5cc(cc6c5cccc6)O)Cl)n(cn3)[C@H]7[C@@H]8C[C@H]7NC8"
A1BEJ SMILES "OpenEye OEToolkits" 3.1.0.0 "CN(C)C1CN(C1)c2c3c(c4cc(c(c(c4n2)F)c5cc(cc6c5cccc6)O)Cl)n(cn3)C7C8CC7NC8"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1BEJ "SYSTEMATIC NAME" ACDLabs 14.52 "(4P)-4-{1-[(1R,4R,5S)-2-azabicyclo[2.1.1]hexan-5-yl]-8-chloro-4-[3-(dimethylamino)azetidin-1-yl]-6-fluoro-1H-imidazo[4,5-c]quinolin-7-yl}naphthalen-2-ol"
A1BEJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[1-[(1~{R},4~{R},5~{S})-2-azabicyclo[2.1.1]hexan-5-yl]-8-chloranyl-4-[3-(dimethylamino)azetidin-1-yl]-6-fluoranyl-imidazo[4,5-c]quinolin-7-yl]naphthalen-2-ol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1BEJ "Create component" 2024-10-29 RCSB
A1BEJ "Initial release" 2025-01-22 RCSB
#