data_A1BGC # _chem_comp.id A1BGC _chem_comp.name "{5-hydroxy-6-methyl-4-[(E)-{[(pyridin-2-yl)methyl]imino}methyl]pyridin-3-yl}methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-08 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BGC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9E97 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BGC N1 N1 N 0 1 Y N N N N N -31.918 -33.018 21.547 -1.429 3.247 -0.613 N1 A1BGC 1 A1BGC C4 C1 C 0 1 Y N N N N N -32.323 -31.526 23.872 0.072 1.145 0.306 C4 A1BGC 2 A1BGC C5 C2 C 0 1 Y N N N N N -33.412 -32.088 23.180 -1.288 0.987 0.016 C5 A1BGC 3 A1BGC C6 C3 C 0 1 Y N N N N N -33.157 -32.834 22.045 -2.005 2.073 -0.444 C6 A1BGC 4 A1BGC C8 C4 C 0 1 N N N N N N -31.700 -29.602 27.009 2.935 -0.946 1.554 C8 A1BGC 5 A1BGC C10 C5 C 0 1 Y N N N N N -30.341 -29.037 29.058 5.258 -0.763 0.655 C10 A1BGC 6 A1BGC C13 C6 C 0 1 Y N N N N N -28.141 -28.870 27.497 4.575 -2.431 -1.382 C13 A1BGC 7 A1BGC C11 C7 C 0 1 Y N N N N N -29.124 -28.730 29.636 6.221 -1.092 -0.288 C11 A1BGC 8 A1BGC C12 C8 C 0 1 Y N N N N N -28.006 -28.633 28.842 5.866 -1.942 -1.324 C12 A1BGC 9 A1BGC C2 C9 C 0 1 Y N N N N N -30.875 -32.481 22.173 -0.152 3.445 -0.355 C2 A1BGC 10 A1BGC C2A C10 C 0 1 N N N N N N -29.508 -32.694 21.601 0.447 4.811 -0.568 C2A A1BGC 11 A1BGC C3 C11 C 0 1 Y N N N N N -31.043 -31.729 23.345 0.647 2.411 0.112 C3 A1BGC 12 A1BGC C4A C12 C 0 1 N N N N N N -32.498 -30.752 25.106 0.879 0.012 0.801 C4A A1BGC 13 A1BGC C5A C13 C 0 1 N N N N N N -34.817 -31.968 23.699 -1.960 -0.349 0.203 C5A A1BGC 14 A1BGC C9 C14 C 0 1 Y N N N N N -30.403 -29.247 27.695 3.989 -1.295 0.535 C9 A1BGC 15 A1BGC N14 N2 N 0 1 Y N N N N N -29.312 -29.182 26.916 3.688 -2.105 -0.462 N14 A1BGC 16 A1BGC N7 N3 N 0 1 N N N N N N -31.485 -30.387 25.798 2.134 0.178 1.063 N7 A1BGC 17 A1BGC O3 O1 O 0 1 N N N N N N -29.915 -31.229 23.904 1.961 2.621 0.378 O3 A1BGC 18 A1BGC OP1 O2 O 0 1 N N N N N N -37.524 -31.343 24.641 -4.546 -1.934 1.451 OP1 A1BGC 19 A1BGC OP2 O3 O 0 1 N N N N N N -37.112 -28.927 23.941 -3.824 -2.617 -0.869 OP2 A1BGC 20 A1BGC OP3 O4 O 0 1 N N N N N N -35.811 -29.990 25.870 -5.787 -1.041 -0.688 OP3 A1BGC 21 A1BGC OP4 O5 O 0 1 N N N N N N -35.393 -30.645 23.484 -3.338 -0.244 -0.160 OP4 A1BGC 22 A1BGC P P1 P 0 1 N N N N N N -36.523 -30.192 24.547 -4.362 -1.484 -0.084 P A1BGC 23 A1BGC H1 H1 H 0 1 N N N N N N -33.990 -33.291 21.532 -3.055 1.959 -0.670 H1 A1BGC 24 A1BGC H2 H2 H 0 1 N N N N N N -32.225 -28.673 26.741 2.289 -1.808 1.719 H2 A1BGC 25 A1BGC H3 H3 H 0 1 N N N N N N -32.321 -30.186 27.705 3.415 -0.668 2.492 H3 A1BGC 26 A1BGC H4 H4 H 0 1 N N N N N N -31.232 -29.112 29.664 5.499 -0.104 1.476 H4 A1BGC 27 A1BGC H5 H5 H 0 1 N N N N N N -27.262 -28.802 26.874 4.291 -3.093 -2.186 H5 A1BGC 28 A1BGC H6 H6 H 0 1 N N N N N N -29.052 -28.568 30.701 7.222 -0.694 -0.217 H6 A1BGC 29 A1BGC H7 H7 H 0 1 N N N N N N -27.046 -28.377 29.266 6.590 -2.219 -2.076 H7 A1BGC 30 A1BGC H8 H8 H 0 1 N N N N N N -29.583 -33.304 20.689 0.356 5.395 0.347 H8 A1BGC 31 A1BGC H9 H9 H 0 1 N N N N N N -29.058 -31.721 21.356 1.500 4.709 -0.831 H9 A1BGC 32 A1BGC H10 H10 H 0 1 N N N N N N -28.879 -33.214 22.339 -0.081 5.317 -1.376 H10 A1BGC 33 A1BGC H11 H11 H 0 1 N N N N N N -33.492 -30.487 25.434 0.421 -0.956 0.944 H11 A1BGC 34 A1BGC H12 H12 H 0 1 N N N N N N -35.445 -32.711 23.186 -1.473 -1.092 -0.428 H12 A1BGC 35 A1BGC H13 H13 H 0 1 N N N N N N -34.811 -32.176 24.779 -1.882 -0.652 1.247 H13 A1BGC 36 A1BGC H14 H14 H 0 1 N N N N N N -30.139 -30.740 24.687 2.139 2.901 1.287 H14 A1BGC 37 A1BGC H15 H15 H 0 1 N N N N N N -38.363 -31.062 24.296 -4.896 -1.240 2.025 H15 A1BGC 38 A1BGC H16 H16 H 0 1 N N N N N N -35.850 -29.073 26.114 -6.455 -1.741 -0.674 H16 A1BGC 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BGC N1 C6 DOUB Y N 1 A1BGC N1 C2 SING Y N 2 A1BGC C2A C2 SING N N 3 A1BGC C6 C5 SING Y N 4 A1BGC C2 C3 DOUB Y N 5 A1BGC C5 C5A SING N N 6 A1BGC C5 C4 DOUB Y N 7 A1BGC C3 C4 SING Y N 8 A1BGC C3 O3 SING N N 9 A1BGC OP4 C5A SING N N 10 A1BGC OP4 P SING N N 11 A1BGC C4 C4A SING N N 12 A1BGC OP2 P DOUB N N 13 A1BGC P OP1 SING N N 14 A1BGC P OP3 SING N N 15 A1BGC C4A N7 DOUB N N 16 A1BGC N7 C8 SING N N 17 A1BGC N14 C13 DOUB Y N 18 A1BGC N14 C9 SING Y N 19 A1BGC C8 C9 SING N N 20 A1BGC C13 C12 SING Y N 21 A1BGC C9 C10 DOUB Y N 22 A1BGC C12 C11 DOUB Y N 23 A1BGC C10 C11 SING Y N 24 A1BGC C6 H1 SING N N 25 A1BGC C8 H2 SING N N 26 A1BGC C8 H3 SING N N 27 A1BGC C10 H4 SING N N 28 A1BGC C13 H5 SING N N 29 A1BGC C11 H6 SING N N 30 A1BGC C12 H7 SING N N 31 A1BGC C2A H8 SING N N 32 A1BGC C2A H9 SING N N 33 A1BGC C2A H10 SING N N 34 A1BGC C4A H11 SING N N 35 A1BGC C5A H12 SING N N 36 A1BGC C5A H13 SING N N 37 A1BGC O3 H14 SING N N 38 A1BGC OP1 H15 SING N N 39 A1BGC OP3 H16 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BGC SMILES ACDLabs 14.52 "Oc1c(/C=N/Cc2ccccn2)c(cnc1C)COP(=O)(O)O" A1BGC InChI InChI 1.06 "InChI=1S/C14H16N3O5P/c1-10-14(18)13(8-15-7-12-4-2-3-5-16-12)11(6-17-10)9-22-23(19,20)21/h2-6,8,18H,7,9H2,1H3,(H2,19,20,21)/b15-8+" A1BGC InChIKey InChI 1.06 DLZFMIJJITXVAE-OVCLIPMQSA-N A1BGC SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NCc2ccccn2)c1O" A1BGC SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NCc2ccccn2)c1O" A1BGC SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/Cc2ccccn2)O" A1BGC SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NCc2ccccn2)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BGC "SYSTEMATIC NAME" ACDLabs 14.52 "{5-hydroxy-6-methyl-4-[(E)-{[(pyridin-2-yl)methyl]imino}methyl]pyridin-3-yl}methyl dihydrogen phosphate" A1BGC "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[6-methyl-5-oxidanyl-4-[(~{E})-pyridin-2-ylmethyliminomethyl]pyridin-3-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BGC "Create component" 2024-11-08 RCSB A1BGC "Initial release" 2025-07-23 RCSB #