data_A1BGE # _chem_comp.id A1BGE _chem_comp.name "5'-deoxy-5'-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}sulfamamido)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H31 N9 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-10 _chem_comp.pdbx_modified_date 2025-04-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 557.647 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BGE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DRK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BGE C11 C1 C 0 1 N N R N N N -5.000 0.189 9.567 4.935 0.074 0.127 C11 A1BGE 1 A1BGE C02 C2 C 0 1 Y N N N N N -6.695 -0.886 14.086 5.090 -4.820 0.274 C02 A1BGE 2 A1BGE C04 C3 C 0 1 Y N N N N N -8.313 -0.626 12.403 7.169 -3.817 0.278 C04 A1BGE 3 A1BGE C06 C4 C 0 1 Y N N N N N -6.171 -0.356 11.772 5.342 -2.423 0.208 C06 A1BGE 4 A1BGE C07 C5 C 0 1 Y N N N N N -5.725 -0.613 13.095 4.498 -3.547 0.226 C07 A1BGE 5 A1BGE C09 C6 C 0 1 Y N N N N N -3.954 -0.251 11.884 3.232 -1.788 0.150 C09 A1BGE 6 A1BGE C12 C7 C 0 1 N N R N N N -3.669 0.882 9.048 5.186 0.533 -1.332 C12 A1BGE 7 A1BGE C14 C8 C 0 1 N N S N N N -2.847 -0.298 8.505 4.977 2.064 -1.230 C14 A1BGE 8 A1BGE C16 C9 C 0 1 N N R N N N -3.984 -1.178 7.957 4.136 2.246 0.049 C16 A1BGE 9 A1BGE C17 C10 C 0 1 N N N N N N -3.535 -2.636 7.856 2.822 2.954 -0.289 C17 A1BGE 10 A1BGE C22 C11 C 0 1 N N N N N N -4.632 -6.944 8.525 -1.032 2.414 0.377 C22 A1BGE 11 A1BGE C23 C12 C 0 1 N N N N N N -4.486 -6.729 10.018 -2.306 2.232 -0.451 C23 A1BGE 12 A1BGE C24 C13 C 0 1 N N N N N N -3.755 -7.839 10.727 -3.005 0.937 -0.034 C24 A1BGE 13 A1BGE C25 C14 C 0 1 N N N N N N -4.461 -8.286 11.943 -4.279 0.756 -0.862 C25 A1BGE 14 A1BGE C26 C15 C 0 1 N N N N N N -3.647 -8.035 13.202 -4.978 -0.540 -0.445 C26 A1BGE 15 A1BGE C27 C16 C 0 1 N N S N N N -3.647 -9.278 14.069 -6.252 -0.721 -1.273 C27 A1BGE 16 A1BGE C29 C17 C 0 1 N N N N N N -3.203 -10.511 16.220 -8.944 -0.440 -1.319 C29 A1BGE 17 A1BGE C30 C18 C 0 1 N N R N N N -2.082 -10.928 15.258 -8.509 -1.857 -0.899 C30 A1BGE 18 A1BGE C31 C19 C 0 1 N N S N N N -2.447 -10.236 13.890 -6.984 -2.017 -0.872 C31 A1BGE 19 A1BGE C33 C20 C 0 1 N N N N N N -0.237 -9.538 14.620 -7.827 -2.352 1.231 C33 A1BGE 20 A1BGE N01 N1 N 0 1 N N N N N N -6.424 -1.154 15.398 4.310 -5.963 0.294 N01 A1BGE 21 A1BGE N03 N2 N 0 1 Y N N N N N -8.023 -0.894 13.702 6.417 -4.902 0.296 N03 A1BGE 22 A1BGE N05 N3 N 0 1 Y N N N N N -7.483 -0.353 11.389 6.659 -2.604 0.238 N05 A1BGE 23 A1BGE N08 N4 N 0 1 Y N N N N N -4.324 -0.540 13.129 3.224 -3.089 0.189 N08 A1BGE 24 A1BGE N10 N5 N 0 1 Y N N N N N -5.057 -0.127 10.993 4.515 -1.330 0.161 N10 A1BGE 25 A1BGE N18 N6 N 0 1 N N N N N N -4.504 -3.366 7.134 2.085 3.229 0.947 N18 A1BGE 26 A1BGE N21 N7 N 0 1 N N N N N N -5.146 -5.822 7.742 -0.362 3.654 -0.023 N21 A1BGE 27 A1BGE N32 N8 N 0 1 N N N N N N -1.246 -9.463 13.603 -6.683 -2.328 0.534 N32 A1BGE 28 A1BGE N34 N9 N 0 1 N N N N N N -0.740 -10.424 15.624 -8.916 -2.095 0.495 N34 A1BGE 29 A1BGE O13 O1 O 0 1 N N N N N N -4.017 1.743 7.983 6.521 0.227 -1.740 O13 A1BGE 30 A1BGE O15 O2 O 0 1 N N N N N N -1.970 0.025 7.510 6.233 2.734 -1.106 O15 A1BGE 31 A1BGE O20 O3 O 0 1 N N N N N N -2.875 -5.097 6.720 0.302 4.321 2.259 O20 A1BGE 32 A1BGE O35 O4 O 0 1 N N N N N N 0.840 -8.983 14.612 -7.872 -2.586 2.424 O35 A1BGE 33 A1BGE O36 O5 O 0 1 N N N N N N -4.818 -5.145 5.345 1.290 5.464 0.267 O36 A1BGE 34 A1BGE O37 O6 O 0 1 N N N N N N -5.066 -0.996 8.848 3.866 0.935 0.576 O37 A1BGE 35 A1BGE S19 S1 S 0 1 N N N N N N -4.275 -4.906 6.628 0.822 4.301 0.936 S19 A1BGE 36 A1BGE S28 S2 S 0 1 N N N N N N -3.578 -8.776 15.808 -7.484 0.583 -0.868 S28 A1BGE 37 A1BGE H1 H1 H 0 1 N N N N N N -5.844 0.844 9.305 5.827 0.221 0.735 H1 A1BGE 38 A1BGE H2 H2 H 0 1 N N N N N N -9.363 -0.634 12.152 8.243 -3.928 0.296 H2 A1BGE 39 A1BGE H3 H3 H 0 1 N N N N N N -2.925 -0.124 11.581 2.351 -1.164 0.115 H3 A1BGE 40 A1BGE H4 H4 H 0 1 N N N N N N -3.147 1.392 9.872 4.461 0.086 -2.011 H4 A1BGE 41 A1BGE H5 H5 H 0 1 N N N N N N -2.352 -0.816 9.340 4.433 2.433 -2.100 H5 A1BGE 42 A1BGE H6 H6 H 0 1 N N N N N N -4.252 -0.820 6.952 4.696 2.828 0.780 H6 A1BGE 43 A1BGE H7 H7 H 0 1 N N N N N N -3.430 -3.060 8.865 3.036 3.892 -0.801 H7 A1BGE 44 A1BGE H8 H8 H 0 1 N N N N N N -2.568 -2.689 7.334 2.221 2.315 -0.936 H8 A1BGE 45 A1BGE H9 H9 H 0 1 N N N N N N -5.315 -7.793 8.377 -1.290 2.464 1.434 H9 A1BGE 46 A1BGE H10 H10 H 0 1 N N N N N N -3.639 -7.199 8.127 -0.364 1.569 0.206 H10 A1BGE 47 A1BGE H11 H11 H 0 1 N N N N N N -3.934 -5.792 10.180 -2.973 3.077 -0.280 H11 A1BGE 48 A1BGE H12 H12 H 0 1 N N N N N N -5.492 -6.642 10.455 -2.047 2.182 -1.509 H12 A1BGE 49 A1BGE H13 H13 H 0 1 N N N N N N -3.657 -8.693 10.041 -2.337 0.092 -0.205 H13 A1BGE 50 A1BGE H14 H14 H 0 1 N N N N N N -2.755 -7.480 11.010 -3.263 0.987 1.023 H14 A1BGE 51 A1BGE H15 H15 H 0 1 N N N N N N -5.413 -7.740 12.021 -4.946 1.600 -0.691 H15 A1BGE 52 A1BGE H16 H16 H 0 1 N N N N N N -4.662 -9.364 11.860 -4.021 0.705 -1.920 H16 A1BGE 53 A1BGE H17 H17 H 0 1 N N N N N N -2.613 -7.783 12.924 -4.310 -1.384 -0.616 H17 A1BGE 54 A1BGE H18 H18 H 0 1 N N N N N N -4.090 -7.199 13.763 -5.236 -0.489 0.612 H18 A1BGE 55 A1BGE H19 H19 H 0 1 N N N N N N -4.588 -9.832 13.936 -6.022 -0.718 -2.339 H19 A1BGE 56 A1BGE H20 H20 H 0 1 N N N N N N -4.092 -11.142 16.071 -9.130 -0.395 -2.392 H20 A1BGE 57 A1BGE H21 H21 H 0 1 N N N N N N -2.865 -10.594 17.263 -9.827 -0.125 -0.762 H21 A1BGE 58 A1BGE H22 H22 H 0 1 N N N N N N -2.074 -12.021 15.132 -8.960 -2.601 -1.556 H22 A1BGE 59 A1BGE H23 H23 H 0 1 N N N N N N -2.655 -10.990 13.117 -6.679 -2.838 -1.520 H23 A1BGE 60 A1BGE H24 H24 H 0 1 N N N N N N -7.280 -1.320 15.888 3.343 -5.891 0.274 H24 A1BGE 61 A1BGE H25 H25 H 0 1 N N N N N N -5.842 -1.965 15.459 4.730 -6.837 0.327 H25 A1BGE 62 A1BGE H26 H26 H 0 1 N N N N N N -4.692 -2.832 6.310 2.336 2.783 1.771 H26 A1BGE 63 A1BGE H27 H27 H 0 1 N N N N N N -5.481 -5.164 8.417 -0.613 4.096 -0.849 H27 A1BGE 64 A1BGE H28 H28 H 0 1 N N N N N N -1.134 -8.925 12.767 -5.798 -2.490 0.897 H28 A1BGE 65 A1BGE H29 H29 H 0 1 N N N N N N -0.250 -10.670 16.461 -9.827 -2.070 0.828 H29 A1BGE 66 A1BGE H30 H30 H 0 1 N N N N N N -4.525 2.472 8.318 6.726 0.495 -2.646 H30 A1BGE 67 A1BGE H31 H31 H 0 1 N N N N N N -1.275 0.568 7.864 6.824 2.604 -1.860 H31 A1BGE 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BGE O36 S19 DOUB N N 1 A1BGE S19 O20 DOUB N N 2 A1BGE S19 N18 SING N N 3 A1BGE S19 N21 SING N N 4 A1BGE N18 C17 SING N N 5 A1BGE O15 C14 SING N N 6 A1BGE N21 C22 SING N N 7 A1BGE C17 C16 SING N N 8 A1BGE C16 C14 SING N N 9 A1BGE C16 O37 SING N N 10 A1BGE O13 C12 SING N N 11 A1BGE C14 C12 SING N N 12 A1BGE C22 C23 SING N N 13 A1BGE O37 C11 SING N N 14 A1BGE C12 C11 SING N N 15 A1BGE C11 N10 SING N N 16 A1BGE C23 C24 SING N N 17 A1BGE C24 C25 SING N N 18 A1BGE N10 C06 SING Y N 19 A1BGE N10 C09 SING Y N 20 A1BGE N05 C06 DOUB Y N 21 A1BGE N05 C04 SING Y N 22 A1BGE C06 C07 SING Y N 23 A1BGE C09 N08 DOUB Y N 24 A1BGE C25 C26 SING N N 25 A1BGE C04 N03 DOUB Y N 26 A1BGE C07 N08 SING Y N 27 A1BGE C07 C02 DOUB Y N 28 A1BGE C26 C27 SING N N 29 A1BGE N32 C31 SING N N 30 A1BGE N32 C33 SING N N 31 A1BGE N03 C02 SING Y N 32 A1BGE C31 C27 SING N N 33 A1BGE C31 C30 SING N N 34 A1BGE C27 S28 SING N N 35 A1BGE C02 N01 SING N N 36 A1BGE O35 C33 DOUB N N 37 A1BGE C33 N34 SING N N 38 A1BGE C30 N34 SING N N 39 A1BGE C30 C29 SING N N 40 A1BGE S28 C29 SING N N 41 A1BGE C11 H1 SING N N 42 A1BGE C04 H2 SING N N 43 A1BGE C09 H3 SING N N 44 A1BGE C12 H4 SING N N 45 A1BGE C14 H5 SING N N 46 A1BGE C16 H6 SING N N 47 A1BGE C17 H7 SING N N 48 A1BGE C17 H8 SING N N 49 A1BGE C22 H9 SING N N 50 A1BGE C22 H10 SING N N 51 A1BGE C23 H11 SING N N 52 A1BGE C23 H12 SING N N 53 A1BGE C24 H13 SING N N 54 A1BGE C24 H14 SING N N 55 A1BGE C25 H15 SING N N 56 A1BGE C25 H16 SING N N 57 A1BGE C26 H17 SING N N 58 A1BGE C26 H18 SING N N 59 A1BGE C27 H19 SING N N 60 A1BGE C29 H20 SING N N 61 A1BGE C29 H21 SING N N 62 A1BGE C30 H22 SING N N 63 A1BGE C31 H23 SING N N 64 A1BGE N01 H24 SING N N 65 A1BGE N01 H25 SING N N 66 A1BGE N18 H26 SING N N 67 A1BGE N21 H27 SING N N 68 A1BGE N32 H28 SING N N 69 A1BGE N34 H29 SING N N 70 A1BGE O13 H30 SING N N 71 A1BGE O15 H31 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BGE SMILES ACDLabs 14.52 "O=C1NC2C(CCCCCNS(=O)(=O)NCC3OC(n4cnc5c(N)ncnc54)C(O)C3O)SCC2N1" A1BGE InChI InChI 1.06 "InChI=1S/C20H31N9O6S2/c21-17-14-18(23-8-22-17)29(9-24-14)19-16(31)15(30)11(35-19)6-26-37(33,34)25-5-3-1-2-4-12-13-10(7-36-12)27-20(32)28-13/h8-13,15-16,19,25-26,30-31H,1-7H2,(H2,21,22,23)(H2,27,28,32)/t10-,11+,12-,13-,15+,16+,19+/m0/s1" A1BGE InChIKey InChI 1.06 XESGTLMEDWYNFU-SQGSUPJISA-N A1BGE SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN[S](=O)(=O)NCCCCC[C@@H]4SC[C@@H]5NC(=O)N[C@H]45)[C@@H](O)[C@H]3O" A1BGE SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN[S](=O)(=O)NCCCCC[CH]4SC[CH]5NC(=O)N[CH]45)[CH](O)[CH]3O" A1BGE SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CNS(=O)(=O)NCCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)O)O)N" A1BGE SMILES "OpenEye OEToolkits" 3.1.0.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CNS(=O)(=O)NCCCCCC4C5C(CS4)NC(=O)N5)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BGE "SYSTEMATIC NAME" ACDLabs 14.52 "5'-deoxy-5'-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}sulfamamido)adenosine" A1BGE "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{a}~{S},4~{S},6~{a}~{R})-4-[5-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfamoylamino]pentyl]-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BGE "Create component" 2024-11-10 RCSB A1BGE "Initial release" 2025-04-09 RCSB #