data_A1BGS # _chem_comp.id A1BGS _chem_comp.name "4-methoxy-2-(piperazin-1-yl)-6-{[2-(piperazin-1-yl)pyridin-4-yl]methyl}pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-11 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 369.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BGS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BGS N1 N1 N 0 1 Y N N N N N -7.992 5.865 -9.163 -3.066 1.449 -1.252 N1 A1BGS 1 A1BGS N3 N2 N 0 1 N N N N N N -8.156 1.739 -6.641 -5.689 0.008 2.479 N3 A1BGS 2 A1BGS C4 C1 C 0 1 Y N N N N N -7.849 4.737 -14.014 1.033 -1.330 -1.460 C4 A1BGS 3 A1BGS C5 C2 C 0 1 N N N N N N -9.102 4.820 -13.179 -0.119 -1.372 -2.430 C5 A1BGS 4 A1BGS C6 C3 C 0 1 Y N N N N N -8.725 5.196 -11.762 -1.166 -0.373 -2.010 C6 A1BGS 5 A1BGS C7 C4 C 0 1 Y N N N N N -8.184 6.439 -11.475 -1.129 0.934 -2.477 C7 A1BGS 6 A1BGS C8 C5 C 0 1 Y N N N N N -7.832 6.731 -10.177 -2.104 1.825 -2.073 C8 A1BGS 7 A1BGS C10 C6 C 0 1 N N N N N N -9.598 2.641 -8.466 -5.055 1.001 0.333 C10 A1BGS 8 A1BGS C13 C7 C 0 1 N N N N N N -8.305 4.143 -6.992 -3.638 -0.686 1.336 C13 A1BGS 9 A1BGS C15 C8 C 0 1 Y N N N N N -6.825 5.086 -16.046 2.670 -0.141 -0.357 C15 A1BGS 10 A1BGS C17 C9 C 0 1 N N N N N N -7.897 4.426 -19.376 5.103 2.261 1.024 C17 A1BGS 11 A1BGS C1 C10 C 0 1 N N N N N N -3.140 4.092 -14.482 4.074 -3.339 1.599 C1 A1BGS 12 A1BGS O1 O1 O 0 1 N N N N N N -4.366 3.950 -13.742 2.973 -3.509 0.703 O1 A1BGS 13 A1BGS C2 C11 C 0 1 Y N N N N N -5.524 4.366 -14.295 2.526 -2.402 0.062 C2 A1BGS 14 A1BGS C3 C12 C 0 1 Y N N N N N -6.633 4.348 -13.479 1.456 -2.484 -0.828 C3 A1BGS 15 A1BGS C9 C13 C 0 1 Y N N N N N -8.511 4.649 -9.425 -3.136 0.212 -0.785 C9 A1BGS 16 A1BGS N2 N3 N 0 1 N N N N N N -8.754 3.830 -8.354 -4.167 -0.142 0.078 N2 A1BGS 17 A1BGS C11 C14 C 0 1 N N N N N N -8.957 1.423 -7.828 -6.218 0.552 1.221 C11 A1BGS 18 A1BGS C12 C15 C 0 1 N N N N N N -8.565 3.001 -6.029 -4.801 -1.135 2.224 C12 A1BGS 19 A1BGS C14 C16 C 0 1 Y N N N N N -8.898 4.295 -10.727 -2.187 -0.738 -1.150 C14 A1BGS 20 A1BGS N4 N4 N 0 1 Y N N N N N -7.950 5.089 -15.299 1.655 -0.189 -1.208 N4 A1BGS 21 A1BGS N5 N5 N 0 1 N N N N N N -6.931 5.404 -17.350 3.295 1.071 -0.119 N5 A1BGS 22 A1BGS C16 C17 C 0 1 N N N N N N -8.169 5.207 -18.105 4.389 0.918 0.849 C16 A1BGS 23 A1BGS N6 N6 N 0 1 N N N N N N -6.736 4.928 -20.126 4.138 3.270 1.480 N6 A1BGS 24 A1BGS C18 C18 C 0 1 N N N N N N -6.181 6.167 -19.574 3.043 3.423 0.511 C18 A1BGS 25 A1BGS C19 C19 C 0 1 N N N N N N -5.831 6.007 -18.106 2.329 2.081 0.337 C19 A1BGS 26 A1BGS N7 N7 N 0 1 Y N N N N N -5.619 4.688 -15.584 3.100 -1.224 0.272 N7 A1BGS 27 A1BGS H13 H1 H 0 1 N N N N N N -8.266 1.004 -5.972 -5.215 0.723 3.011 H13 A1BGS 28 A1BGS H5 H3 H 0 1 N N N N N N -9.774 5.584 -13.597 0.238 -1.124 -3.430 H5 A1BGS 29 A1BGS H6 H4 H 0 1 N N N N N N -9.611 3.845 -13.179 -0.553 -2.372 -2.437 H6 A1BGS 30 A1BGS H7 H5 H 0 1 N N N N N N -8.041 7.168 -12.259 -0.346 1.251 -3.149 H7 A1BGS 31 A1BGS H8 H6 H 0 1 N N N N N N -7.408 7.701 -9.964 -2.078 2.842 -2.434 H8 A1BGS 32 A1BGS H10 H7 H 0 1 N N N N N N -10.558 2.839 -7.966 -4.496 1.790 0.837 H10 A1BGS 33 A1BGS H9 H8 H 0 1 N N N N N N -9.775 2.431 -9.531 -5.444 1.379 -0.613 H9 A1BGS 34 A1BGS H16 H9 H 0 1 N N N N N N -8.842 5.035 -6.638 -2.994 -1.538 1.122 H16 A1BGS 35 A1BGS H17 H10 H 0 1 N N N N N N -7.225 4.350 -7.013 -3.063 0.084 1.852 H17 A1BGS 36 A1BGS H22 H11 H 0 1 N N N N N N -7.713 3.375 -19.108 5.897 2.157 1.763 H22 A1BGS 37 A1BGS H21 H12 H 0 1 N N N N N N -8.785 4.489 -20.022 5.532 2.572 0.071 H21 A1BGS 38 A1BGS H1 H13 H 0 1 N N N N N N -2.303 3.704 -13.883 4.331 -4.300 2.045 H1 A1BGS 39 A1BGS H2 H14 H 0 1 N N N N N N -3.212 3.526 -15.422 4.932 -2.952 1.050 H2 A1BGS 40 A1BGS H3 H15 H 0 1 N N N N N N -2.968 5.155 -14.706 3.798 -2.636 2.385 H3 A1BGS 41 A1BGS H4 H16 H 0 1 N N N N N N -6.556 4.038 -12.447 0.968 -3.429 -1.019 H4 A1BGS 42 A1BGS H11 H17 H 0 1 N N N N N N -9.754 0.724 -7.535 -6.793 -0.218 0.705 H11 A1BGS 43 A1BGS H12 H18 H 0 1 N N N N N N -8.304 0.943 -8.572 -6.862 1.405 1.435 H12 A1BGS 44 A1BGS H14 H19 H 0 1 N N N N N N -9.638 2.961 -5.790 -4.412 -1.512 3.170 H14 A1BGS 45 A1BGS H15 H20 H 0 1 N N N N N N -7.990 3.163 -5.106 -5.360 -1.923 1.719 H15 A1BGS 46 A1BGS H18 H21 H 0 1 N N N N N N -9.329 3.324 -10.920 -2.246 -1.746 -0.768 H18 A1BGS 47 A1BGS H20 H22 H 0 1 N N N N N N -8.887 4.650 -17.485 5.097 0.175 0.483 H20 A1BGS 48 A1BGS H19 H23 H 0 1 N N N N N N -8.594 6.188 -18.366 3.984 0.595 1.808 H19 A1BGS 49 A1BGS H29 H24 H 0 1 N N N N N N -6.023 4.227 -20.113 3.781 3.042 2.396 H29 A1BGS 50 A1BGS H25 H26 H 0 1 N N N N N N -5.271 6.433 -20.133 2.335 4.167 0.877 H25 A1BGS 51 A1BGS H24 H27 H 0 1 N N N N N N -6.924 6.971 -19.680 3.448 3.747 -0.447 H24 A1BGS 52 A1BGS H27 H28 H 0 1 N N N N N N -4.943 5.363 -18.019 1.535 2.185 -0.403 H27 A1BGS 53 A1BGS H26 H29 H 0 1 N N N N N N -5.608 6.997 -17.683 1.901 1.770 1.289 H26 A1BGS 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BGS C1 O1 SING N N 1 A1BGS O1 C2 SING N N 2 A1BGS C2 C3 DOUB Y N 3 A1BGS C3 C4 SING Y N 4 A1BGS C4 C5 SING N N 5 A1BGS C5 C6 SING N N 6 A1BGS C6 C7 DOUB Y N 7 A1BGS C7 C8 SING Y N 8 A1BGS C8 N1 DOUB Y N 9 A1BGS N1 C9 SING Y N 10 A1BGS C9 N2 SING N N 11 A1BGS N2 C10 SING N N 12 A1BGS C10 C11 SING N N 13 A1BGS C11 N3 SING N N 14 A1BGS N3 C12 SING N N 15 A1BGS C12 C13 SING N N 16 A1BGS C9 C14 DOUB Y N 17 A1BGS C4 N4 DOUB Y N 18 A1BGS N4 C15 SING Y N 19 A1BGS C15 N5 SING N N 20 A1BGS N5 C16 SING N N 21 A1BGS C16 C17 SING N N 22 A1BGS C17 N6 SING N N 23 A1BGS N6 C18 SING N N 24 A1BGS C18 C19 SING N N 25 A1BGS C15 N7 DOUB Y N 26 A1BGS C2 N7 SING Y N 27 A1BGS C6 C14 SING Y N 28 A1BGS N5 C19 SING N N 29 A1BGS N2 C13 SING N N 30 A1BGS N3 H13 SING N N 31 A1BGS C5 H5 SING N N 32 A1BGS C5 H6 SING N N 33 A1BGS C7 H7 SING N N 34 A1BGS C8 H8 SING N N 35 A1BGS C10 H10 SING N N 36 A1BGS C10 H9 SING N N 37 A1BGS C13 H16 SING N N 38 A1BGS C13 H17 SING N N 39 A1BGS C17 H22 SING N N 40 A1BGS C17 H21 SING N N 41 A1BGS C1 H1 SING N N 42 A1BGS C1 H2 SING N N 43 A1BGS C1 H3 SING N N 44 A1BGS C3 H4 SING N N 45 A1BGS C11 H11 SING N N 46 A1BGS C11 H12 SING N N 47 A1BGS C12 H14 SING N N 48 A1BGS C12 H15 SING N N 49 A1BGS C14 H18 SING N N 50 A1BGS C16 H20 SING N N 51 A1BGS C16 H19 SING N N 52 A1BGS N6 H29 SING N N 53 A1BGS C18 H25 SING N N 54 A1BGS C18 H24 SING N N 55 A1BGS C19 H27 SING N N 56 A1BGS C19 H26 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BGS SMILES ACDLabs 14.52 "COc1nc(nc(Cc2ccnc(c2)N2CCNCC2)c1)N1CCNCC1" A1BGS InChI InChI 1.06 "InChI=1S/C19H27N7O/c1-27-18-14-16(23-19(24-18)26-10-6-21-7-11-26)12-15-2-3-22-17(13-15)25-8-4-20-5-9-25/h2-3,13-14,20-21H,4-12H2,1H3" A1BGS InChIKey InChI 1.06 JUPFIHBGLOTCIX-UHFFFAOYSA-N A1BGS SMILES_CANONICAL CACTVS 3.385 "COc1cc(Cc2ccnc(c2)N3CCNCC3)nc(n1)N4CCNCC4" A1BGS SMILES CACTVS 3.385 "COc1cc(Cc2ccnc(c2)N3CCNCC3)nc(n1)N4CCNCC4" A1BGS SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1cc(nc(n1)N2CCNCC2)Cc3ccnc(c3)N4CCNCC4" A1BGS SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1cc(nc(n1)N2CCNCC2)Cc3ccnc(c3)N4CCNCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BGS "SYSTEMATIC NAME" ACDLabs 14.52 "4-methoxy-2-(piperazin-1-yl)-6-{[2-(piperazin-1-yl)pyridin-4-yl]methyl}pyrimidine" A1BGS "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-methoxy-2-piperazin-1-yl-6-[(2-piperazin-1-ylpyridin-4-yl)methyl]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BGS "Create component" 2024-11-11 RCSB A1BGS "Initial release" 2025-02-26 RCSB #