data_A1BHA # _chem_comp.id A1BHA _chem_comp.name "4-methoxy-2-(piperazin-1-yl)-6-{[(pyrimidin-5-yl)oxy]methyl}pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-11 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.332 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BHA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HP5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BHA N1 N1 N 0 1 Y N N N N N -4.662 6.031 -20.046 -6.323 0.268 -0.165 N1 A1BHA 1 A1BHA N3 N2 N 0 1 Y N N N N N -7.809 5.421 -13.834 0.752 -0.636 0.264 N3 A1BHA 2 A1BHA C4 C1 C 0 1 Y N N N N N -7.508 5.132 -15.112 -0.364 0.064 0.130 C4 A1BHA 3 A1BHA C5 C2 C 0 1 N N N N N N -7.017 6.261 -15.968 -1.704 -0.626 0.151 C5 A1BHA 4 A1BHA C6 C3 C 0 1 Y N N N N N -5.881 5.757 -18.040 -4.021 -0.117 -0.015 C6 A1BHA 5 A1BHA C7 C4 C 0 1 Y N N N N N -4.709 6.039 -18.714 -5.093 0.756 -0.167 C7 A1BHA 6 A1BHA C8 C5 C 0 1 Y N N N N N -5.795 5.741 -20.675 -6.538 -1.024 -0.022 C8 A1BHA 7 A1BHA C10 C6 C 0 1 Y N N N N N -8.238 4.407 -13.045 1.935 -0.039 0.248 C10 A1BHA 8 A1BHA C13 C7 C 0 1 N N N N N N -8.418 5.767 -9.578 4.373 -2.730 -0.391 C13 A1BHA 9 A1BHA C1 C8 C 0 1 N N N N N N -7.529 0.657 -14.205 2.418 3.910 -0.197 C1 A1BHA 10 A1BHA O1 O1 O 0 1 N N N N N N -8.208 1.589 -15.057 1.093 3.375 -0.194 O1 A1BHA 11 A1BHA C2 C9 C 0 1 Y N N N N N -8.076 2.879 -14.727 0.971 2.034 -0.041 C2 A1BHA 12 A1BHA C3 C10 C 0 1 Y N N N N N -7.626 3.852 -15.589 -0.287 1.436 -0.028 C3 A1BHA 13 A1BHA O2 O2 O 0 1 N N N N N N -5.871 5.776 -16.668 -2.742 0.343 -0.011 O2 A1BHA 14 A1BHA N2 N3 N 0 1 Y N N N N N -6.963 5.450 -20.113 -5.549 -1.882 0.126 N2 A1BHA 15 A1BHA C9 C11 C 0 1 Y N N N N N -7.006 5.457 -18.782 -4.291 -1.474 0.134 C9 A1BHA 16 A1BHA N4 N4 N 0 1 N N N N N N -8.544 4.635 -11.743 3.079 -0.805 0.391 N4 A1BHA 17 A1BHA C11 C12 C 0 1 N N N N N N -9.328 3.667 -10.974 4.284 0.035 0.347 C11 A1BHA 18 A1BHA C12 C13 C 0 1 N N N N N N -8.728 3.385 -9.611 5.519 -0.836 0.587 C12 A1BHA 19 A1BHA N5 N5 N 0 1 N N N N N N -7.884 4.480 -9.144 5.578 -1.890 -0.435 N5 A1BHA 20 A1BHA C14 C14 C 0 1 N N N N N N -8.310 5.917 -11.082 3.138 -1.859 -0.631 C14 A1BHA 21 A1BHA N6 N6 N 0 1 Y N N N N N -8.375 3.141 -13.467 2.050 1.272 0.098 N6 A1BHA 22 A1BHA H5 H1 H 0 1 N N N N N N -7.798 6.563 -16.682 -1.752 -1.350 -0.663 H5 A1BHA 23 A1BHA H6 H2 H 0 1 N N N N N N -6.742 7.121 -15.340 -1.833 -1.141 1.103 H6 A1BHA 24 A1BHA H7 H3 H 0 1 N N N N N N -3.816 6.270 -18.152 -4.923 1.816 -0.285 H7 A1BHA 25 A1BHA H8 H4 H 0 1 N N N N N N -5.764 5.742 -21.755 -7.554 -1.390 -0.024 H8 A1BHA 26 A1BHA H15 H5 H 0 1 N N N N N N -9.476 5.836 -9.284 4.434 -3.496 -1.165 H15 A1BHA 27 A1BHA H16 H6 H 0 1 N N N N N N -7.850 6.575 -9.094 4.297 -3.207 0.586 H16 A1BHA 28 A1BHA H3 H7 H 0 1 N N N N N N -7.705 -0.367 -14.567 2.987 3.469 -1.015 H3 A1BHA 29 A1BHA H1 H8 H 0 1 N N N N N N -6.450 0.869 -14.216 2.373 4.991 -0.327 H1 A1BHA 30 A1BHA H2 H9 H 0 1 N N N N N N -7.911 0.753 -13.178 2.905 3.678 0.751 H2 A1BHA 31 A1BHA H4 H10 H 0 1 N N N N N N -7.373 3.615 -16.612 -1.182 2.030 -0.139 H4 A1BHA 32 A1BHA H9 H11 H 0 1 N N N N N N -7.932 5.225 -18.277 -3.485 -2.183 0.255 H9 A1BHA 33 A1BHA H10 H12 H 0 1 N N N N N N -10.344 4.066 -10.836 4.359 0.512 -0.631 H10 A1BHA 34 A1BHA H11 H13 H 0 1 N N N N N N -9.377 2.725 -11.539 4.222 0.800 1.121 H11 A1BHA 35 A1BHA H12 H14 H 0 1 N N N N N N -9.544 3.234 -8.889 6.416 -0.220 0.526 H12 A1BHA 36 A1BHA H13 H15 H 0 1 N N N N N N -8.120 2.471 -9.674 5.456 -1.291 1.576 H13 A1BHA 37 A1BHA H19 H16 H 0 1 N N N N N N -7.845 4.461 -8.145 5.710 -1.496 -1.354 H19 A1BHA 38 A1BHA H17 H18 H 0 1 N N N N N N -9.059 6.644 -11.428 3.200 -1.404 -1.620 H17 A1BHA 39 A1BHA H18 H19 H 0 1 N N N N N N -7.303 6.278 -11.338 2.240 -2.475 -0.570 H18 A1BHA 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BHA C1 O1 SING N N 1 A1BHA O1 C2 SING N N 2 A1BHA C2 C3 DOUB Y N 3 A1BHA C3 C4 SING Y N 4 A1BHA C4 C5 SING N N 5 A1BHA C5 O2 SING N N 6 A1BHA O2 C6 SING N N 7 A1BHA C6 C7 DOUB Y N 8 A1BHA C7 N1 SING Y N 9 A1BHA N1 C8 DOUB Y N 10 A1BHA C8 N2 SING Y N 11 A1BHA N2 C9 DOUB Y N 12 A1BHA C4 N3 DOUB Y N 13 A1BHA N3 C10 SING Y N 14 A1BHA C10 N4 SING N N 15 A1BHA N4 C11 SING N N 16 A1BHA C11 C12 SING N N 17 A1BHA C12 N5 SING N N 18 A1BHA N5 C13 SING N N 19 A1BHA C13 C14 SING N N 20 A1BHA C10 N6 DOUB Y N 21 A1BHA C2 N6 SING Y N 22 A1BHA C6 C9 SING Y N 23 A1BHA N4 C14 SING N N 24 A1BHA C5 H5 SING N N 25 A1BHA C5 H6 SING N N 26 A1BHA C7 H7 SING N N 27 A1BHA C8 H8 SING N N 28 A1BHA C13 H15 SING N N 29 A1BHA C13 H16 SING N N 30 A1BHA C1 H3 SING N N 31 A1BHA C1 H1 SING N N 32 A1BHA C1 H2 SING N N 33 A1BHA C3 H4 SING N N 34 A1BHA C9 H9 SING N N 35 A1BHA C11 H10 SING N N 36 A1BHA C11 H11 SING N N 37 A1BHA C12 H12 SING N N 38 A1BHA C12 H13 SING N N 39 A1BHA N5 H19 SING N N 40 A1BHA C14 H17 SING N N 41 A1BHA C14 H18 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BHA SMILES ACDLabs 14.52 "COc1nc(nc(COc2cncnc2)c1)N1CCNCC1" A1BHA InChI InChI 1.06 "InChI=1S/C14H18N6O2/c1-21-13-6-11(9-22-12-7-16-10-17-8-12)18-14(19-13)20-4-2-15-3-5-20/h6-8,10,15H,2-5,9H2,1H3" A1BHA InChIKey InChI 1.06 QKQGGPZKCCADEL-UHFFFAOYSA-N A1BHA SMILES_CANONICAL CACTVS 3.385 "COc1cc(COc2cncnc2)nc(n1)N3CCNCC3" A1BHA SMILES CACTVS 3.385 "COc1cc(COc2cncnc2)nc(n1)N3CCNCC3" A1BHA SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1cc(nc(n1)N2CCNCC2)COc3cncnc3" A1BHA SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1cc(nc(n1)N2CCNCC2)COc3cncnc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BHA "SYSTEMATIC NAME" ACDLabs 14.52 "4-methoxy-2-(piperazin-1-yl)-6-{[(pyrimidin-5-yl)oxy]methyl}pyrimidine" A1BHA "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-methoxy-2-piperazin-1-yl-6-(pyrimidin-5-yloxymethyl)pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BHA "Create component" 2024-11-11 RCSB A1BHA "Initial release" 2025-02-26 RCSB #