data_A1BHL # _chem_comp.id A1BHL _chem_comp.name "N-[5-({2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]ethyl}amino)-5-oxopentyl]-4,7-dibromo-3-hydroxynaphthalene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 Br2 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-18 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 651.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BHL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EC2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BHL N1 N1 N 0 1 Y N N N N N 3.174 27.570 -57.703 8.734 -1.035 -1.973 N1 A1BHL 1 A1BHL N3 N2 N 0 1 N N N N N N -3.579 28.952 -55.734 4.944 2.640 1.285 N3 A1BHL 2 A1BHL C4 C1 C 0 1 Y N N N N N 2.097 29.369 -56.784 10.050 -0.844 -0.197 C4 A1BHL 3 A1BHL C5 C2 C 0 1 N N N N N N 0.494 28.061 -55.292 8.819 1.034 0.966 C5 A1BHL 4 A1BHL C6 C3 C 0 1 N N N N N N -1.634 27.502 -56.130 7.352 2.787 1.687 C6 A1BHL 5 A1BHL C7 C4 C 0 1 N N N N N N -2.900 28.098 -56.698 6.090 3.553 1.288 C7 A1BHL 6 A1BHL C8 C5 C 0 1 N N N N N N -3.394 30.274 -55.646 3.718 3.097 0.961 C8 A1BHL 7 A1BHL C10 C6 C 0 1 N N N N N N -2.879 32.361 -57.017 1.278 2.924 0.558 C10 A1BHL 8 A1BHL C13 C7 C 0 1 N N N N N N -4.050 35.675 -58.078 -3.552 2.281 -0.172 C13 A1BHL 9 A1BHL C15 C8 C 0 1 Y N N N N N -4.661 34.923 -55.717 -5.986 1.844 -0.515 C15 A1BHL 10 A1BHL C17 C9 C 0 1 Y N N N N N -6.008 34.241 -57.571 -4.524 0.027 0.154 C17 A1BHL 11 A1BHL C20 C10 C 0 1 Y N N N N N -7.469 32.732 -54.491 -8.007 -1.223 -0.188 C20 A1BHL 12 A1BHL C21 C11 C 0 1 Y N N N N N -8.519 32.028 -54.999 -7.825 -2.532 0.137 C21 A1BHL 13 A1BHL C22 C12 C 0 1 Y N N N N N -8.749 32.050 -56.381 -6.562 -3.021 0.468 C22 A1BHL 14 A1BHL C24 C13 C 0 1 N N N N N N 2.402 31.549 -57.163 11.937 -2.100 0.247 C24 A1BHL 15 A1BHL C1 C14 C 0 1 N N N N N N 3.816 29.946 -58.384 10.763 -2.564 -1.740 C1 A1BHL 16 A1BHL C11 C15 C 0 1 N N N N N N -2.461 32.847 -58.408 0.082 1.970 0.554 C11 A1BHL 17 A1BHL C12 C16 C 0 1 N N N N N N -3.531 33.556 -59.223 -1.181 2.737 0.155 C12 A1BHL 18 A1BHL C14 C17 C 0 1 Y N N N N N -4.908 34.919 -57.105 -4.706 1.361 -0.176 C14 A1BHL 19 A1BHL C16 C18 C 0 1 Y N N N N N -5.484 34.219 -54.858 -7.067 1.011 -0.520 C16 A1BHL 20 A1BHL C18 C19 C 0 1 Y N N N N N -6.857 33.494 -56.725 -5.623 -0.843 0.148 C18 A1BHL 21 A1BHL C19 C20 C 0 1 Y N N N N N -6.600 33.480 -55.328 -6.909 -0.346 -0.190 C19 A1BHL 22 A1BHL C2 C21 C 0 1 Y N N N N N 3.082 28.959 -57.670 9.848 -1.544 -1.391 C2 A1BHL 23 A1BHL C23 C22 C 0 1 Y N N N N N -7.963 32.768 -57.226 -5.474 -2.203 0.477 C23 A1BHL 24 A1BHL C3 C23 C 0 1 Y N N N N N 2.255 27.170 -56.861 8.253 -0.087 -1.224 C3 A1BHL 25 A1BHL C9 C24 C 0 1 N N N N N N -2.477 30.923 -56.660 2.540 2.158 0.957 C9 A1BHL 26 A1BHL N2 N3 N 0 1 Y N N N N N 1.578 28.205 -56.258 9.032 0.068 -0.115 N2 A1BHL 27 A1BHL N4 N4 N 0 1 N N N N N N -3.461 35.006 -59.080 -2.326 1.824 0.151 N4 A1BHL 28 A1BHL N5 N5 N 0 1 N N N N N N 1.715 30.632 -56.479 11.093 -1.149 0.583 N5 A1BHL 29 A1BHL N6 N6 N 0 1 N N N N N N 2.140 32.854 -56.988 12.992 -2.378 1.079 N6 A1BHL 30 A1BHL N7 N7 N 0 1 N N N N N N 3.393 31.237 -58.062 11.793 -2.817 -0.903 N7 A1BHL 31 A1BHL O1 O1 O 0 1 N N N N N N 4.707 29.772 -59.231 10.626 -3.201 -2.772 O1 A1BHL 32 A1BHL O2 O2 O 0 1 N N N N N N -0.721 28.541 -55.804 7.651 1.809 0.689 O2 A1BHL 33 A1BHL O3 O3 O 0 1 N N N N N N -3.597 35.594 -55.203 -6.147 3.154 -0.835 O3 A1BHL 34 A1BHL O4 O4 O 0 1 N N N N N N -3.915 36.886 -57.943 -3.707 3.452 -0.461 O4 A1BHL 35 A1BHL O5 O5 O 0 1 N N N N N N -3.968 30.937 -54.783 3.564 4.265 0.673 O5 A1BHL 36 A1BHL BR1 BR1 BR 0 0 N N N N N N -5.058 34.244 -53.011 -8.777 1.681 -0.971 BR1 A1BHL 37 A1BHL BR2 BR2 BR 0 0 N N N N N N -10.223 31.062 -57.077 -6.357 -4.848 0.913 BR2 A1BHL 38 A1BHL H8 H1 H 0 1 N N N N N N -4.223 28.524 -55.099 5.068 1.706 1.515 H8 A1BHL 39 A1BHL H2 H2 H 0 1 N N N N N N 0.379 26.996 -55.040 8.686 0.501 1.908 H2 A1BHL 40 A1BHL H3 H3 H 0 1 N N N N N N 0.747 28.628 -54.384 9.684 1.693 1.041 H3 A1BHL 41 A1BHL H4 H4 H 0 1 N N N N N N -1.177 26.834 -56.876 8.186 3.482 1.776 H4 A1BHL 42 A1BHL H5 H5 H 0 1 N N N N N N -1.875 26.928 -55.223 7.189 2.291 2.644 H5 A1BHL 43 A1BHL H6 H6 H 0 1 N N N N N N -2.644 28.696 -57.585 6.221 3.976 0.292 H6 A1BHL 44 A1BHL H7 H7 H 0 1 N N N N N N -3.578 27.282 -56.989 5.911 4.357 2.003 H7 A1BHL 45 A1BHL H11 H8 H 0 1 N N N N N N -3.975 32.431 -56.951 1.409 3.347 -0.438 H11 A1BHL 46 A1BHL H12 H9 H 0 1 N N N N N N -2.423 33.032 -56.274 1.099 3.728 1.273 H12 A1BHL 47 A1BHL H19 H10 H 0 1 N N N N N N -6.233 34.281 -58.627 -3.541 -0.341 0.409 H19 A1BHL 48 A1BHL H20 H11 H 0 1 N N N N N N -7.293 32.721 -53.425 -8.992 -0.860 -0.442 H20 A1BHL 49 A1BHL H21 H12 H 0 1 N N N N N N -9.165 31.461 -54.345 -8.672 -3.202 0.138 H21 A1BHL 50 A1BHL H13 H13 H 0 1 N N N N N N -1.620 33.544 -58.281 0.260 1.167 -0.161 H13 A1BHL 51 A1BHL H14 H14 H 0 1 N N N N N N -2.127 31.971 -58.983 -0.049 1.548 1.550 H14 A1BHL 52 A1BHL H15 H15 H 0 1 N N N N N N -3.398 33.298 -60.284 -1.359 3.540 0.870 H15 A1BHL 53 A1BHL H16 H16 H 0 1 N N N N N N -4.520 33.214 -58.884 -1.050 3.159 -0.841 H16 A1BHL 54 A1BHL H22 H17 H 0 1 N N N N N N -8.183 32.784 -58.283 -4.502 -2.595 0.737 H22 A1BHL 55 A1BHL H1 H18 H 0 1 N N N N N N 2.048 26.129 -56.659 7.368 0.492 -1.447 H1 A1BHL 56 A1BHL H9 H19 H 0 1 N N N N N N -1.457 30.939 -56.248 2.719 1.354 0.242 H9 A1BHL 57 A1BHL H10 H20 H 0 1 N N N N N N -2.491 30.319 -57.579 2.409 1.735 1.953 H10 A1BHL 58 A1BHL H17 H21 H 0 1 N N N N N N -2.949 35.527 -59.763 -2.202 0.889 0.382 H17 A1BHL 59 A1BHL H23 H22 H 0 1 N N N N N N 1.430 33.139 -56.345 13.623 -3.077 0.845 H23 A1BHL 60 A1BHL H24 H23 H 0 1 N N N N N N 2.655 33.541 -57.501 13.108 -1.876 1.901 H24 A1BHL 61 A1BHL H25 H24 H 0 1 N N N N N N 3.849 31.998 -58.524 12.434 -3.511 -1.122 H25 A1BHL 62 A1BHL H18 H25 H 0 1 N N N N N N -3.583 35.491 -54.259 -6.343 3.722 -0.078 H18 A1BHL 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BHL O1 C1 DOUB N N 1 A1BHL C1 C2 SING N N 2 A1BHL C2 N1 SING Y N 3 A1BHL N1 C3 DOUB Y N 4 A1BHL C2 C4 DOUB Y N 5 A1BHL C4 N2 SING Y N 6 A1BHL N2 C5 SING N N 7 A1BHL C5 O2 SING N N 8 A1BHL O2 C6 SING N N 9 A1BHL C6 C7 SING N N 10 A1BHL C7 N3 SING N N 11 A1BHL N3 C8 SING N N 12 A1BHL C8 C9 SING N N 13 A1BHL C9 C10 SING N N 14 A1BHL C10 C11 SING N N 15 A1BHL C11 C12 SING N N 16 A1BHL C12 N4 SING N N 17 A1BHL N4 C13 SING N N 18 A1BHL C13 C14 SING N N 19 A1BHL C14 C15 DOUB Y N 20 A1BHL C15 O3 SING N N 21 A1BHL C15 C16 SING Y N 22 A1BHL C16 BR1 SING N N 23 A1BHL C14 C17 SING Y N 24 A1BHL C17 C18 DOUB Y N 25 A1BHL C18 C19 SING Y N 26 A1BHL C19 C20 SING Y N 27 A1BHL C20 C21 DOUB Y N 28 A1BHL C21 C22 SING Y N 29 A1BHL C22 BR2 SING N N 30 A1BHL C22 C23 DOUB Y N 31 A1BHL C13 O4 DOUB N N 32 A1BHL C8 O5 DOUB N N 33 A1BHL C4 N5 SING N N 34 A1BHL N5 C24 DOUB N N 35 A1BHL C24 N6 SING N N 36 A1BHL C24 N7 SING N N 37 A1BHL C1 N7 SING N N 38 A1BHL C3 N2 SING Y N 39 A1BHL C16 C19 DOUB Y N 40 A1BHL C18 C23 SING Y N 41 A1BHL N3 H8 SING N N 42 A1BHL C5 H2 SING N N 43 A1BHL C5 H3 SING N N 44 A1BHL C6 H4 SING N N 45 A1BHL C6 H5 SING N N 46 A1BHL C7 H6 SING N N 47 A1BHL C7 H7 SING N N 48 A1BHL C10 H11 SING N N 49 A1BHL C10 H12 SING N N 50 A1BHL C17 H19 SING N N 51 A1BHL C20 H20 SING N N 52 A1BHL C21 H21 SING N N 53 A1BHL C11 H13 SING N N 54 A1BHL C11 H14 SING N N 55 A1BHL C12 H15 SING N N 56 A1BHL C12 H16 SING N N 57 A1BHL C23 H22 SING N N 58 A1BHL C3 H1 SING N N 59 A1BHL C9 H9 SING N N 60 A1BHL C9 H10 SING N N 61 A1BHL N4 H17 SING N N 62 A1BHL N6 H23 SING N N 63 A1BHL N6 H24 SING N N 64 A1BHL N7 H25 SING N N 65 A1BHL O3 H18 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BHL SMILES ACDLabs 14.52 "Brc1cc2cc(c(O)c(Br)c2cc1)C(=O)NCCCCC(=O)NCCOCn1cnc2c1N=C(N)NC2=O" A1BHL InChI InChI 1.06 "InChI=1S/C24H25Br2N7O5/c25-14-4-5-15-13(9-14)10-16(20(35)18(15)26)22(36)29-6-2-1-3-17(34)28-7-8-38-12-33-11-30-19-21(33)31-24(27)32-23(19)37/h4-5,9-11,35H,1-3,6-8,12H2,(H,28,34)(H,29,36)(H3,27,31,32,37)" A1BHL InChIKey InChI 1.06 OFCSNXRJBLPABY-UHFFFAOYSA-N A1BHL SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(COCCNC(=O)CCCCNC(=O)c3cc4cc(Br)ccc4c(Br)c3O)cnc2C(=O)N1" A1BHL SMILES CACTVS 3.385 "NC1=Nc2n(COCCNC(=O)CCCCNC(=O)c3cc4cc(Br)ccc4c(Br)c3O)cnc2C(=O)N1" A1BHL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1Br)cc(c(c2Br)O)C(=O)NCCCCC(=O)NCCOCn3cnc4c3N=C(NC4=O)N" A1BHL SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1Br)cc(c(c2Br)O)C(=O)NCCCCC(=O)NCCOCn3cnc4c3N=C(NC4=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BHL "SYSTEMATIC NAME" ACDLabs 14.52 "N-[5-({2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]ethyl}amino)-5-oxopentyl]-4,7-dibromo-3-hydroxynaphthalene-2-carboxamide" A1BHL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[5-[2-[(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)methoxy]ethylamino]-5-oxidanylidene-pentyl]-4,7-bis(bromanyl)-3-oxidanyl-naphthalene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BHL "Create component" 2024-11-18 RCSB A1BHL "Initial release" 2025-03-12 RCSB #