data_A1BIE # _chem_comp.id A1BIE _chem_comp.name "N~6~-(2-methylprop-2-enoyl)-L-lysine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-25 _chem_comp.pdbx_modified_date 2025-04-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BIE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9EHI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BIE C1 C1 C 0 1 N N N N N N 15.506 0.227 -15.200 6.211 0.103 -0.036 C1 A1BIE 1 A1BIE C2 C2 C 0 1 N N N N N N 14.468 1.022 -14.950 5.011 -0.446 0.127 C2 A1BIE 2 A1BIE C3 C3 C 0 1 N N N N N N 14.631 2.493 -14.920 4.894 -1.880 0.576 C3 A1BIE 3 A1BIE C4 C4 C 0 1 N N N N N N 13.120 0.409 -14.711 3.798 0.345 -0.129 C4 A1BIE 4 A1BIE O1 O1 O 0 1 N N N N N N 12.080 1.088 -14.592 3.893 1.503 -0.491 O1 A1BIE 5 A1BIE NZ N1 N 0 1 N N N N N N 13.071 -0.921 -14.647 2.582 -0.212 0.037 NZ A1BIE 6 A1BIE CE C5 C 0 1 N N N N N N 11.795 -1.631 -14.715 1.374 0.577 -0.219 CE A1BIE 7 A1BIE CD C6 C 0 1 N N N N N N 11.861 -3.005 -14.106 0.138 -0.285 0.042 CD A1BIE 8 A1BIE CG C7 C 0 1 N N N N N N 10.453 -3.562 -13.952 -1.124 0.538 -0.225 CG A1BIE 9 A1BIE CB C8 C 0 1 N N N N N N 10.280 -5.000 -14.399 -2.360 -0.324 0.037 CB A1BIE 10 A1BIE CA C9 C 0 1 N N S N Y N 8.948 -5.343 -15.086 -3.622 0.499 -0.230 CA A1BIE 11 A1BIE N N2 N 0 1 N N N Y Y N 7.790 -4.672 -14.508 -3.703 1.599 0.740 N A1BIE 12 A1BIE C C10 C 0 1 N N N N Y Y 8.793 -6.858 -15.042 -4.836 -0.383 -0.092 C A1BIE 13 A1BIE O O2 O 0 1 N N N N Y Y 8.309 -7.444 -14.105 -5.488 -0.359 0.925 O A1BIE 14 A1BIE OXT O3 O 0 1 N Y N N Y Y 8.891 -7.433 -16.247 -5.194 -1.195 -1.100 OXT A1BIE 15 A1BIE H1 H1 H 0 1 N N N N N N 15.371 -0.844 -15.229 6.295 1.131 -0.357 H1 A1BIE 16 A1BIE H6 H2 H 0 1 N N N N N N 16.483 0.653 -15.374 7.102 -0.477 0.156 H6 A1BIE 17 A1BIE H3 H3 H 0 1 N N N N N N 13.663 2.965 -14.698 5.891 -2.300 0.714 H3 A1BIE 18 A1BIE H4 H4 H 0 1 N N N N N N 15.358 2.765 -14.141 4.348 -1.923 1.518 H4 A1BIE 19 A1BIE H5 H5 H 0 1 N N N N N N 14.994 2.842 -15.898 4.360 -2.455 -0.181 H5 A1BIE 20 A1BIE HZ1 H6 H 0 1 N N N N N N 13.920 -1.441 -14.551 2.507 -1.135 0.325 HZ1 A1BIE 21 A1BIE HE2 H7 H 0 1 N N N N N N 11.037 -1.044 -14.177 1.359 1.443 0.442 HE2 A1BIE 22 A1BIE HE3 H8 H 0 1 N N N N N N 11.502 -1.728 -15.771 1.372 0.911 -1.256 HE3 A1BIE 23 A1BIE HD2 H9 H 0 1 N N N N N N 12.448 -3.668 -14.759 0.153 -1.152 -0.619 HD2 A1BIE 24 A1BIE HD3 H10 H 0 1 N N N N N N 12.341 -2.945 -13.118 0.141 -0.620 1.080 HD3 A1BIE 25 A1BIE HG2 H11 H 0 1 N N N N N N 9.771 -2.936 -14.546 -1.139 1.404 0.437 HG2 A1BIE 26 A1BIE HG3 H12 H 0 1 N N N N N N 10.176 -3.499 -12.889 -1.127 0.873 -1.262 HG3 A1BIE 27 A1BIE HB2 H13 H 0 1 N N N N N N 10.374 -5.641 -13.510 -2.345 -1.191 -0.624 HB2 A1BIE 28 A1BIE HB3 H14 H 0 1 N N N N N N 11.091 -5.232 -15.105 -2.358 -0.659 1.074 HB3 A1BIE 29 A1BIE HA H15 H 0 1 N N N N Y N 9.033 -5.046 -16.142 -3.582 0.908 -1.240 HA A1BIE 30 A1BIE H H16 H 0 1 N N N Y Y N 7.922 -3.682 -14.552 -3.741 1.246 1.685 H A1BIE 31 A1BIE H2 H17 H 0 1 N N N Y Y N 6.969 -4.922 -15.022 -2.933 2.241 0.625 H2 A1BIE 32 A1BIE HXT H19 H 0 1 N N N N Y Y 8.534 -8.312 -16.209 -5.979 -1.742 -0.965 HXT A1BIE 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BIE C1 C2 DOUB N N 1 A1BIE CA C SING N N 2 A1BIE CA N SING N N 3 A1BIE CA CB SING N N 4 A1BIE C O DOUB N N 5 A1BIE C2 C3 SING N N 6 A1BIE C2 C4 SING N N 7 A1BIE CE NZ SING N N 8 A1BIE CE CD SING N N 9 A1BIE C4 NZ SING N N 10 A1BIE C4 O1 DOUB N N 11 A1BIE CB CG SING N N 12 A1BIE CD CG SING N N 13 A1BIE C OXT SING N N 14 A1BIE C1 H1 SING N N 15 A1BIE C1 H6 SING N N 16 A1BIE C3 H3 SING N N 17 A1BIE C3 H4 SING N N 18 A1BIE C3 H5 SING N N 19 A1BIE NZ HZ1 SING N N 20 A1BIE CE HE2 SING N N 21 A1BIE CE HE3 SING N N 22 A1BIE CD HD2 SING N N 23 A1BIE CD HD3 SING N N 24 A1BIE CG HG2 SING N N 25 A1BIE CG HG3 SING N N 26 A1BIE CB HB2 SING N N 27 A1BIE CB HB3 SING N N 28 A1BIE CA HA SING N N 29 A1BIE N H SING N N 30 A1BIE N H2 SING N N 31 A1BIE OXT HXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BIE SMILES ACDLabs 14.52 "NC(CCCCNC(=O)C(=C)C)C(=O)O" A1BIE InChI InChI 1.06 "InChI=1S/C10H18N2O3/c1-7(2)9(13)12-6-4-3-5-8(11)10(14)15/h8H,1,3-6,11H2,2H3,(H,12,13)(H,14,15)/t8-/m0/s1" A1BIE InChIKey InChI 1.06 SLDBQSXUDRDNOV-QMMMGPOBSA-N A1BIE SMILES_CANONICAL CACTVS 3.385 "CC(=C)C(=O)NCCCC[C@H](N)C(O)=O" A1BIE SMILES CACTVS 3.385 "CC(=C)C(=O)NCCCC[CH](N)C(O)=O" A1BIE SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(=C)C(=O)NCCCC[C@@H](C(=O)O)N" A1BIE SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(=C)C(=O)NCCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BIE "SYSTEMATIC NAME" ACDLabs 14.52 "N~6~-(2-methylprop-2-enoyl)-L-lysine" A1BIE "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-azanyl-6-(2-methylprop-2-enoylamino)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BIE "Create component" 2024-11-25 RCSB A1BIE "Modify PCM" 2024-12-19 RCSB A1BIE "Initial release" 2025-04-09 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BIE _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Methacrylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #