data_A1BJ0 # _chem_comp.id A1BJ0 _chem_comp.name "(3R)-3-[(7-bromo-9H-pyrimido[4,5-b]indol-4-yl)amino]-N-methylbutanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H16 Br N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.224 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJ0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HQH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJ0 N2 N1 N 0 1 N N N N N N -45.776 -31.237 0.235 -4.267 3.321 0.517 N2 A1BJ0 1 A1BJ0 C3 C1 C 0 1 N N N N N N -44.618 -30.817 0.733 -4.007 2.019 0.288 C3 A1BJ0 2 A1BJ0 C9 C2 C 0 1 Y N N N N N -47.807 -28.920 4.999 0.622 -0.692 -0.088 C9 A1BJ0 3 A1BJ0 C12 C3 C 0 1 Y N N N N N -50.540 -29.014 5.425 3.182 0.365 -0.116 C12 A1BJ0 4 A1BJ0 C14 C4 C 0 1 Y N N N N N -48.683 -28.818 3.923 0.841 0.591 -0.584 C14 A1BJ0 5 A1BJ0 C17 C5 C 0 1 Y N N N N N -46.118 -29.104 6.536 -0.148 -2.737 0.645 C17 A1BJ0 6 A1BJ0 C19 C6 C 0 1 Y N N N N N -43.918 -29.147 6.239 -2.327 -3.486 0.605 C19 A1BJ0 7 A1BJ0 C1 C7 C 0 1 N N N N N N -46.105 -32.646 0.118 -4.081 3.880 1.859 C1 A1BJ0 8 A1BJ0 C10 C8 C 0 1 Y N N N N N -48.340 -29.066 6.295 1.698 -1.448 0.403 C10 A1BJ0 9 A1BJ0 C11 C9 C 0 1 Y N N N N N -49.708 -29.112 6.524 2.978 -0.905 0.383 C11 A1BJ0 10 A1BJ0 C13 C10 C 0 1 Y N N N N N -50.051 -28.863 4.136 2.117 1.112 -0.597 C13 A1BJ0 11 A1BJ0 C21 C11 C 0 1 N N N N N N -43.543 -27.328 2.049 -4.137 -0.653 -2.449 C21 A1BJ0 12 A1BJ0 C4 C12 C 0 1 N N N N N N -44.426 -29.316 0.780 -4.193 1.445 -1.093 C4 A1BJ0 13 A1BJ0 C5 C13 C 0 1 N N R N N N -44.062 -28.754 2.146 -3.831 -0.042 -1.080 C5 A1BJ0 14 A1BJ0 C7 C14 C 0 1 Y N N N N N -45.196 -28.907 4.342 -1.936 -1.367 -0.219 C7 A1BJ0 15 A1BJ0 C8 C15 C 0 1 Y N N N N N -46.362 -28.946 5.147 -0.576 -1.531 0.070 C8 A1BJ0 16 A1BJ0 N16 N2 N 0 1 Y N N N N N -47.305 -29.174 7.206 1.210 -2.670 0.836 N16 A1BJ0 17 A1BJ0 N18 N3 N 0 1 Y N N N N N -44.917 -29.205 7.122 -1.057 -3.680 0.892 N18 A1BJ0 18 A1BJ0 N20 N4 N 0 1 Y N N N N N -43.981 -29.007 4.911 -2.770 -2.366 0.064 N20 A1BJ0 19 A1BJ0 N6 N5 N 0 1 N N N N N N -45.248 -28.801 2.999 -2.404 -0.195 -0.785 N6 A1BJ0 20 A1BJ0 O22 O1 O 0 1 N N N N N N -43.749 -31.590 1.127 -3.623 1.308 1.193 O22 A1BJ0 21 A1BJ0 BR15 BR1 BR 0 0 N N N N N N -52.414 -29.188 5.683 4.926 1.095 -0.139 BR15 A1BJ0 22 A1BJ0 H2 H1 H 0 1 N N N N N N -46.444 -30.559 -0.070 -4.574 3.889 -0.207 H2 A1BJ0 23 A1BJ0 H14 H2 H 0 1 N N N N N N -48.296 -28.704 2.921 0.014 1.176 -0.958 H14 A1BJ0 24 A1BJ0 H19 H3 H 0 1 N N N N N N -42.924 -29.224 6.654 -3.034 -4.273 0.820 H19 A1BJ0 25 A1BJ0 H1A H4 H 0 1 N N N N N N -47.109 -32.754 -0.319 -4.725 3.355 2.564 H1A A1BJ0 26 A1BJ0 H1B H5 H 0 1 N N N N N N -45.368 -33.142 -0.531 -3.040 3.763 2.160 H1B A1BJ0 27 A1BJ0 H1C H6 H 0 1 N N N N N N -46.087 -33.111 1.115 -4.340 4.939 1.850 H1C A1BJ0 28 A1BJ0 H11 H7 H 0 1 N N N N N N -50.107 -29.220 7.522 3.814 -1.478 0.755 H11 A1BJ0 29 A1BJ0 H13 H8 H 0 1 N N N N N N -50.733 -28.781 3.303 2.287 2.107 -0.981 H13 A1BJ0 30 A1BJ0 H21C H9 H 0 0 N N N N N N -43.292 -26.959 3.055 -5.199 -0.539 -2.668 H21C A1BJ0 31 A1BJ0 H21B H10 H 0 0 N N N N N N -42.644 -27.308 1.416 -3.552 -0.143 -3.214 H21B A1BJ0 32 A1BJ0 H21A H11 H 0 0 N N N N N N -44.318 -26.685 1.606 -3.880 -1.712 -2.440 H21A A1BJ0 33 A1BJ0 H4B H12 H 0 1 N N N N N N -43.621 -29.053 0.078 -5.232 1.563 -1.399 H4B A1BJ0 34 A1BJ0 H4A H13 H 0 1 N N N N N N -45.364 -28.842 0.456 -3.545 1.970 -1.795 H4A A1BJ0 35 A1BJ0 H5 H14 H 0 1 N N N N N N -43.274 -29.384 2.584 -4.417 -0.552 -0.315 H5 A1BJ0 36 A1BJ0 H16 H15 H 0 1 N N N N N N -47.409 -29.285 8.194 1.751 -3.377 1.220 H16 A1BJ0 37 A1BJ0 H6 H16 H 0 1 N N N N N N -45.753 -27.959 2.811 -1.787 0.526 -0.988 H6 A1BJ0 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJ0 C1 N2 SING N N 1 A1BJ0 N2 C3 SING N N 2 A1BJ0 C3 C4 SING N N 3 A1BJ0 C3 O22 DOUB N N 4 A1BJ0 C4 C5 SING N N 5 A1BJ0 C21 C5 SING N N 6 A1BJ0 C5 N6 SING N N 7 A1BJ0 N6 C7 SING N N 8 A1BJ0 C14 C13 DOUB Y N 9 A1BJ0 C14 C9 SING Y N 10 A1BJ0 C13 C12 SING Y N 11 A1BJ0 C7 N20 DOUB Y N 12 A1BJ0 C7 C8 SING Y N 13 A1BJ0 N20 C19 SING Y N 14 A1BJ0 C9 C8 SING Y N 15 A1BJ0 C9 C10 DOUB Y N 16 A1BJ0 C8 C17 DOUB Y N 17 A1BJ0 C12 BR15 SING N N 18 A1BJ0 C12 C11 DOUB Y N 19 A1BJ0 C19 N18 DOUB Y N 20 A1BJ0 C10 C11 SING Y N 21 A1BJ0 C10 N16 SING Y N 22 A1BJ0 C17 N18 SING Y N 23 A1BJ0 C17 N16 SING Y N 24 A1BJ0 N2 H2 SING N N 25 A1BJ0 C14 H14 SING N N 26 A1BJ0 C19 H19 SING N N 27 A1BJ0 C1 H1A SING N N 28 A1BJ0 C1 H1B SING N N 29 A1BJ0 C1 H1C SING N N 30 A1BJ0 C11 H11 SING N N 31 A1BJ0 C13 H13 SING N N 32 A1BJ0 C21 H21C SING N N 33 A1BJ0 C21 H21B SING N N 34 A1BJ0 C21 H21A SING N N 35 A1BJ0 C4 H4B SING N N 36 A1BJ0 C4 H4A SING N N 37 A1BJ0 C5 H5 SING N N 38 A1BJ0 N16 H16 SING N N 39 A1BJ0 N6 H6 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJ0 SMILES ACDLabs 14.52 "CNC(=O)CC(C)Nc1ncnc2[NH]c3cc(Br)ccc3c12" A1BJ0 InChI InChI 1.06 "InChI=1S/C15H16BrN5O/c1-8(5-12(22)17-2)20-14-13-10-4-3-9(16)6-11(10)21-15(13)19-7-18-14/h3-4,6-8H,5H2,1-2H3,(H,17,22)(H2,18,19,20,21)/t8-/m1/s1" A1BJ0 InChIKey InChI 1.06 ZCRIOTAHXCOQQU-MRVPVSSYSA-N A1BJ0 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)C[C@@H](C)Nc1ncnc2[nH]c3cc(Br)ccc3c12" A1BJ0 SMILES CACTVS 3.385 "CNC(=O)C[CH](C)Nc1ncnc2[nH]c3cc(Br)ccc3c12" A1BJ0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](CC(=O)NC)Nc1c2c3ccc(cc3[nH]c2ncn1)Br" A1BJ0 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(CC(=O)NC)Nc1c2c3ccc(cc3[nH]c2ncn1)Br" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJ0 "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-[(7-bromo-9H-pyrimido[4,5-b]indol-4-yl)amino]-N-methylbutanamide" A1BJ0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[(7-bromanyl-9~{H}-pyrimido[4,5-b]indol-4-yl)amino]-~{N}-methyl-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJ0 "Create component" 2024-12-09 RCSB A1BJ0 "Initial release" 2025-08-20 RCSB #