data_A1BJ3 # _chem_comp.id A1BJ3 _chem_comp.name "(1R,2S)-2-[(thieno[3,2-d]pyrimidin-4-yl)amino]cyclohexane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.357 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJ3 N2 N1 N 0 1 N N N N N N -45.340 -29.299 2.767 0.485 -0.169 -0.084 N2 A1BJ3 1 A1BJ3 C3 C1 C 0 1 N N N N N N -43.769 -31.736 0.274 3.128 0.489 -1.069 C3 A1BJ3 2 A1BJ3 C6 C2 C 0 1 N N N N N N -44.280 -28.954 0.530 1.904 -2.114 -0.514 C6 A1BJ3 3 A1BJ3 C9 C3 C 0 1 Y N N N N N -47.188 -29.199 5.934 -2.160 -1.966 1.506 C9 A1BJ3 4 A1BJ3 C12 C4 C 0 1 Y N N N N N -50.200 -29.178 2.515 -3.834 1.505 -1.029 C12 A1BJ3 5 A1BJ3 C1 C5 C 0 1 N N N N N N -44.232 -32.045 2.702 2.641 1.201 1.256 C1 A1BJ3 6 A1BJ3 C10 C6 C 0 1 Y N N N N N -48.791 -29.186 4.355 -3.180 -0.277 0.288 C10 A1BJ3 7 A1BJ3 C11 C7 C 0 1 Y N N N N N -47.819 -29.229 3.312 -1.917 0.145 -0.133 C11 A1BJ3 8 A1BJ3 C13 C8 C 0 1 Y N N N N N -50.138 -29.158 3.842 -4.214 0.513 -0.239 C13 A1BJ3 9 A1BJ3 C2 C9 C 0 1 N N R N N N -44.839 -31.465 1.367 2.883 0.011 0.364 C2 A1BJ3 10 A1BJ3 C4 C10 C 0 1 N N N N N N -42.524 -30.869 0.458 3.374 -0.719 -1.975 C4 A1BJ3 11 A1BJ3 C5 C11 C 0 1 N N N N N N -42.831 -29.405 0.197 2.149 -1.635 -1.946 C5 A1BJ3 12 A1BJ3 C7 C12 C 0 1 N N S N N N -45.233 -29.885 1.392 1.658 -0.906 0.393 C7 A1BJ3 13 A1BJ3 C8 C13 C 0 1 Y N N N N N -46.436 -29.267 3.678 -0.785 -0.557 0.312 C8 A1BJ3 14 A1BJ3 N1 N2 N 0 1 N N N N N N -43.588 -31.225 3.663 3.590 2.148 1.388 N1 A1BJ3 15 A1BJ3 N3 N3 N 0 1 Y N N N N N -46.151 -29.243 5.021 -0.951 -1.595 1.122 N3 A1BJ3 16 A1BJ3 N4 N4 N 0 1 Y N N N N N -48.505 -29.167 5.681 -3.245 -1.347 1.114 N4 A1BJ3 17 A1BJ3 O1 O1 O 0 1 N N N N N N -44.304 -33.236 2.901 1.592 1.305 1.856 O1 A1BJ3 18 A1BJ3 S1 S1 S 0 1 Y N N N N N -48.623 -29.234 1.792 -2.086 1.540 -1.188 S1 A1BJ3 19 A1BJ3 H13 H1 H 0 1 N N N N N N -44.612 -29.754 3.281 0.598 0.593 -0.673 H13 A1BJ3 20 A1BJ3 H6 H2 H 0 1 N N N N N N -44.207 -31.522 -0.712 2.256 1.038 -1.423 H6 A1BJ3 21 A1BJ3 H5 H3 H 0 1 N N N N N N -43.474 -32.795 0.322 4.001 1.142 -1.089 H5 A1BJ3 22 A1BJ3 H11 H4 H 0 1 N N N N N N -44.197 -28.000 1.071 1.031 -2.767 -0.493 H11 A1BJ3 23 A1BJ3 H12 H5 H 0 1 N N N N N N -44.787 -28.787 -0.432 2.777 -2.662 -0.159 H12 A1BJ3 24 A1BJ3 H14 H6 H 0 1 N N N N N N -46.904 -29.189 6.976 -2.257 -2.816 2.165 H14 A1BJ3 25 A1BJ3 H15 H7 H 0 1 N N N N N N -51.122 -29.161 1.953 -4.508 2.199 -1.510 H15 A1BJ3 26 A1BJ3 H16 H8 H 0 1 N N N N N N -51.012 -29.124 4.475 -5.253 0.324 -0.014 H16 A1BJ3 27 A1BJ3 H1 H9 H 0 1 N N N N N N -45.747 -32.035 1.121 3.756 -0.538 0.718 H1 A1BJ3 28 A1BJ3 H8 H10 H 0 1 N N N N N N -41.747 -31.203 -0.245 3.549 -0.378 -2.995 H8 A1BJ3 29 A1BJ3 H7 H11 H 0 1 N N N N N N -42.158 -30.981 1.489 4.247 -1.267 -1.620 H7 A1BJ3 30 A1BJ3 H9 H12 H 0 1 N N N N N N -42.140 -28.801 0.804 2.324 -2.496 -2.592 H9 A1BJ3 31 A1BJ3 H10 H13 H 0 1 N N N N N N -42.651 -29.206 -0.870 1.277 -1.087 -2.300 H10 A1BJ3 32 A1BJ3 H2 H14 H 0 1 N N N N N N -46.229 -29.817 0.930 1.483 -1.247 1.413 H2 A1BJ3 33 A1BJ3 H3 H15 H 0 1 N N N N N N -43.202 -31.633 4.490 3.434 2.914 1.962 H3 A1BJ3 34 A1BJ3 H4 H16 H 0 1 N N N N N N -43.520 -30.239 3.514 4.429 2.065 0.908 H4 A1BJ3 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJ3 C5 C4 SING N N 1 A1BJ3 C5 C6 SING N N 2 A1BJ3 C3 C4 SING N N 3 A1BJ3 C3 C2 SING N N 4 A1BJ3 C6 C7 SING N N 5 A1BJ3 C2 C7 SING N N 6 A1BJ3 C2 C1 SING N N 7 A1BJ3 C7 N2 SING N N 8 A1BJ3 S1 C12 SING Y N 9 A1BJ3 S1 C11 SING Y N 10 A1BJ3 C12 C13 DOUB Y N 11 A1BJ3 C1 O1 DOUB N N 12 A1BJ3 C1 N1 SING N N 13 A1BJ3 N2 C8 SING N N 14 A1BJ3 C11 C8 DOUB Y N 15 A1BJ3 C11 C10 SING Y N 16 A1BJ3 C8 N3 SING Y N 17 A1BJ3 C13 C10 SING Y N 18 A1BJ3 C10 N4 DOUB Y N 19 A1BJ3 N3 C9 DOUB Y N 20 A1BJ3 N4 C9 SING Y N 21 A1BJ3 N2 H13 SING N N 22 A1BJ3 C3 H6 SING N N 23 A1BJ3 C3 H5 SING N N 24 A1BJ3 C6 H11 SING N N 25 A1BJ3 C6 H12 SING N N 26 A1BJ3 C9 H14 SING N N 27 A1BJ3 C12 H15 SING N N 28 A1BJ3 C13 H16 SING N N 29 A1BJ3 C2 H1 SING N N 30 A1BJ3 C4 H8 SING N N 31 A1BJ3 C4 H7 SING N N 32 A1BJ3 C5 H9 SING N N 33 A1BJ3 C5 H10 SING N N 34 A1BJ3 C7 H2 SING N N 35 A1BJ3 N1 H3 SING N N 36 A1BJ3 N1 H4 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJ3 SMILES ACDLabs 14.52 "NC(=O)C1CCCCC1Nc1ncnc2ccsc12" A1BJ3 InChI InChI 1.06 "InChI=1S/C13H16N4OS/c14-12(18)8-3-1-2-4-9(8)17-13-11-10(5-6-19-11)15-7-16-13/h5-9H,1-4H2,(H2,14,18)(H,15,16,17)/t8-,9+/m1/s1" A1BJ3 InChIKey InChI 1.06 NBDCRVNEXGIXAL-BDAKNGLRSA-N A1BJ3 SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H]1CCCC[C@@H]1Nc2ncnc3ccsc23" A1BJ3 SMILES CACTVS 3.385 "NC(=O)[CH]1CCCC[CH]1Nc2ncnc3ccsc23" A1BJ3 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1csc2c1ncnc2N[C@H]3CCCC[C@H]3C(=O)N" A1BJ3 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1csc2c1ncnc2NC3CCCCC3C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJ3 "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,2S)-2-[(thieno[3,2-d]pyrimidin-4-yl)amino]cyclohexane-1-carboxamide" A1BJ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},2~{S})-2-(thieno[3,2-d]pyrimidin-4-ylamino)cyclohexane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJ3 "Create component" 2024-12-09 RCSB A1BJ3 "Initial release" 2025-08-20 RCSB #