data_A1BJB # _chem_comp.id A1BJB _chem_comp.name "(3R)-3-({(2R)-2-(4-carboxyphenyl)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]acetyl}amino)-2-hydroxy-3,4-dihydro-2H-1,2-benzoxaborinine-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 B N4 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-06 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 552.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MD0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJB C10 C1 C 0 1 N N N N N N -9.237 -6.033 -21.478 -3.769 0.760 0.422 C10 A1BJB 1 A1BJB N12 N1 N 0 1 N N N N N N -11.094 -4.576 -21.616 -1.538 0.218 -0.447 N12 A1BJB 2 A1BJB C13 C2 C 0 1 N N N N N N -12.137 -5.402 -22.164 -0.334 -0.196 -0.006 C13 A1BJB 3 A1BJB C15 C3 C 0 1 N N R N N N -13.129 -4.786 -23.134 0.925 0.393 -0.588 C15 A1BJB 4 A1BJB C17 C4 C 0 1 N N N N N N -15.546 -4.737 -22.582 3.273 -0.258 -0.595 C17 A1BJB 5 A1BJB C20 C5 C 0 1 N N N N N N -18.122 -4.726 -21.930 4.203 -1.484 1.291 C20 A1BJB 6 A1BJB C21 C6 C 0 1 N N N N N N -19.171 -5.549 -21.896 4.940 -2.818 1.369 C21 A1BJB 7 A1BJB C24 C7 C 0 1 N N N N N N -21.473 -6.997 -20.478 7.570 -4.773 0.851 C24 A1BJB 8 A1BJB O01 O1 O 0 1 N N N N N N -9.724 -2.624 -20.285 -2.847 -1.594 -2.189 O01 A1BJB 9 A1BJB B02 B1 B 0 1 N N N N N N -9.183 -3.867 -20.035 -3.445 -1.316 -0.932 B02 A1BJB 10 A1BJB O03 O2 O 0 1 N N N N N N -7.845 -3.897 -20.337 -4.690 -1.889 -0.551 O03 A1BJB 11 A1BJB C04 C8 C 0 1 Y N N N N N -7.615 -4.125 -21.742 -5.529 -1.048 0.106 C04 A1BJB 12 A1BJB C05 C9 C 0 1 Y N N N N N -6.765 -3.307 -22.446 -6.856 -1.489 0.284 C05 A1BJB 13 A1BJB C06 C10 C 0 1 Y N N N N N -6.559 -3.499 -23.823 -7.775 -0.689 0.961 C06 A1BJB 14 A1BJB C07 C11 C 0 1 Y N N N N N -7.257 -4.536 -24.476 -7.379 0.534 1.456 C07 A1BJB 15 A1BJB C08 C12 C 0 1 Y N N N N N -8.141 -5.365 -23.769 -6.079 0.966 1.275 C08 A1BJB 16 A1BJB C09 C13 C 0 1 Y N N N N N -8.307 -5.168 -22.386 -5.152 0.185 0.596 C09 A1BJB 17 A1BJB C11 C14 C 0 1 N N R N N N -10.053 -5.075 -20.656 -2.762 -0.354 0.120 C11 A1BJB 18 A1BJB O14 O3 O 0 1 N N N N N N -12.263 -6.517 -21.828 -0.264 -1.043 0.860 O14 A1BJB 19 A1BJB N16 N2 N 0 1 N N N N N N -14.347 -5.476 -22.800 2.092 -0.219 0.053 N16 A1BJB 20 A1BJB O18 O4 O 0 1 N N N N N N -15.565 -3.560 -22.750 3.395 0.295 -1.670 O18 A1BJB 21 A1BJB N19 N3 N 0 1 N N N N N N -16.730 -5.468 -22.190 4.319 -0.910 -0.050 N19 A1BJB 22 A1BJB N22 N4 N 0 1 N N N N N N -19.059 -6.827 -20.936 6.310 -2.677 0.874 N22 A1BJB 23 A1BJB C23 C15 C 0 1 N N N N N N -20.077 -7.351 -20.046 7.400 -3.409 1.523 C23 A1BJB 24 A1BJB C25 C16 C 0 1 N N N N N N -17.874 -7.387 -21.054 6.571 -1.875 -0.178 C25 A1BJB 25 A1BJB O26 O5 O 0 1 N N N N N N -17.622 -8.363 -20.408 7.683 -1.837 -0.661 O26 A1BJB 26 A1BJB C27 C17 C 0 1 N N N N N N -16.781 -6.772 -21.984 5.470 -1.033 -0.742 C27 A1BJB 27 A1BJB O28 O6 O 0 1 N N N N N N -15.937 -7.453 -22.440 5.610 -0.469 -1.806 O28 A1BJB 28 A1BJB C29 C18 C 0 1 Y N N N N N -12.642 -4.878 -24.568 0.942 1.880 -0.349 C29 A1BJB 29 A1BJB C30 C19 C 0 1 Y N N N N N -11.932 -3.807 -25.016 0.577 2.746 -1.365 C30 A1BJB 30 A1BJB C31 C20 C 0 1 Y N N N N N -11.445 -3.784 -26.283 0.590 4.109 -1.152 C31 A1BJB 31 A1BJB C32 C21 C 0 1 Y N N N N N -11.682 -4.838 -27.118 0.973 4.614 0.092 C32 A1BJB 32 A1BJB C33 C22 C 0 1 Y N N N N N -12.409 -5.933 -26.695 1.339 3.735 1.113 C33 A1BJB 33 A1BJB C34 C23 C 0 1 Y N N N N N -12.896 -5.944 -25.402 1.316 2.374 0.888 C34 A1BJB 34 A1BJB C35 C24 C 0 1 N N N N N N -11.123 -4.736 -28.509 0.995 6.073 0.325 C35 A1BJB 35 A1BJB O36 O7 O 0 1 N N N N N N -10.142 -5.443 -28.777 0.640 6.918 -0.663 O36 A1BJB 36 A1BJB O37 O8 O 0 1 N N N N N N -11.623 -3.941 -29.340 1.333 6.510 1.406 O37 A1BJB 37 A1BJB C38 C25 C 0 1 N N N N N N -6.084 -2.217 -21.654 -7.272 -2.800 -0.247 C38 A1BJB 38 A1BJB O39 O9 O 0 1 N N N N N N -6.027 -1.073 -22.136 -6.472 -3.498 -0.838 O39 A1BJB 39 A1BJB O40 O10 O 0 1 N N N N N N -5.587 -2.489 -20.531 -8.540 -3.223 -0.078 O40 A1BJB 40 A1BJB H1 H1 H 0 1 N N N N N N -9.897 -6.658 -22.098 -3.776 1.473 -0.402 H1 A1BJB 41 A1BJB H2 H2 H 0 1 N N N N N N -8.633 -6.677 -20.821 -3.476 1.271 1.339 H2 A1BJB 42 A1BJB H3 H3 H 0 1 N N N N N N -11.061 -3.615 -21.890 -1.595 0.895 -1.139 H3 A1BJB 43 A1BJB H4 H4 H 0 1 N N N N N N -13.238 -3.722 -22.879 0.955 0.197 -1.660 H4 A1BJB 44 A1BJB H5 H5 H 0 1 N N N N N N -18.061 -4.202 -20.965 3.150 -1.641 1.525 H5 A1BJB 45 A1BJB H6 H6 H 0 1 N N N N N N -18.281 -3.994 -22.736 4.633 -0.793 2.016 H6 A1BJB 46 A1BJB H7 H7 H 0 1 N N N N N N -20.043 -4.963 -21.569 4.965 -3.155 2.405 H7 A1BJB 47 A1BJB H8 H8 H 0 1 N N N N N N -19.339 -5.916 -22.919 4.413 -3.556 0.764 H8 A1BJB 48 A1BJB H9 H9 H 0 1 N N N N N N -22.196 -7.421 -19.766 8.381 -5.317 1.334 H9 A1BJB 49 A1BJB H10 H10 H 0 1 N N N N N N -21.582 -5.903 -20.504 6.644 -5.341 0.944 H10 A1BJB 50 A1BJB H11 H11 H 0 1 N N N N N N -21.662 -7.408 -21.481 7.804 -4.631 -0.204 H11 A1BJB 51 A1BJB H12 H12 H 0 1 N N N N N N -9.048 -2.045 -20.617 -3.361 -2.197 -2.744 H12 A1BJB 52 A1BJB H13 H13 H 0 1 N N N N N N -5.879 -2.864 -24.371 -8.792 -1.027 1.097 H13 A1BJB 53 A1BJB H14 H14 H 0 1 N N N N N N -7.109 -4.694 -25.534 -8.086 1.156 1.985 H14 A1BJB 54 A1BJB H15 H15 H 0 1 N N N N N N -8.687 -6.144 -24.280 -5.779 1.926 1.667 H15 A1BJB 55 A1BJB H16 H16 H 0 1 N N N N N N -10.537 -5.614 -19.829 -2.529 -0.902 1.032 H16 A1BJB 56 A1BJB H17 H17 H 0 1 N N N N N N -14.352 -6.473 -22.721 2.014 -0.595 0.944 H17 A1BJB 57 A1BJB H18 H18 H 0 1 N N N N N N -19.986 -8.447 -20.016 7.166 -3.550 2.578 H18 A1BJB 58 A1BJB H19 H19 H 0 1 N N N N N N -19.907 -6.942 -19.039 8.326 -2.840 1.429 H19 A1BJB 59 A1BJB H20 H20 H 0 1 N N N N N N -11.755 -2.969 -24.358 0.282 2.353 -2.327 H20 A1BJB 60 A1BJB H21 H21 H 0 1 N N N N N N -10.873 -2.936 -26.629 0.306 4.783 -1.947 H21 A1BJB 61 A1BJB H22 H22 H 0 1 N N N N N N -12.593 -6.763 -27.361 1.636 4.120 2.077 H22 A1BJB 62 A1BJB H23 H23 H 0 1 N N N N N N -13.473 -6.785 -25.047 1.600 1.693 1.677 H23 A1BJB 63 A1BJB H24 H24 H 0 1 N N N N N N -9.865 -5.276 -29.670 0.671 7.864 -0.463 H24 A1BJB 64 A1BJB H25 H25 H 0 1 N N N N N N -5.194 -1.708 -20.161 -8.766 -4.089 -0.443 H25 A1BJB 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJB O37 C35 DOUB N N 1 A1BJB O36 C35 SING N N 2 A1BJB C35 C32 SING N N 3 A1BJB C32 C33 DOUB Y N 4 A1BJB C32 C31 SING Y N 5 A1BJB C33 C34 SING Y N 6 A1BJB C31 C30 DOUB Y N 7 A1BJB C34 C29 DOUB Y N 8 A1BJB C30 C29 SING Y N 9 A1BJB C29 C15 SING N N 10 A1BJB C07 C06 DOUB Y N 11 A1BJB C07 C08 SING Y N 12 A1BJB C06 C05 SING Y N 13 A1BJB C08 C09 DOUB Y N 14 A1BJB C15 N16 SING N N 15 A1BJB C15 C13 SING N N 16 A1BJB N16 C17 SING N N 17 A1BJB O18 C17 DOUB N N 18 A1BJB C17 N19 SING N N 19 A1BJB C05 C04 DOUB Y N 20 A1BJB C05 C38 SING N N 21 A1BJB O28 C27 DOUB N N 22 A1BJB C09 C04 SING Y N 23 A1BJB C09 C10 SING N N 24 A1BJB N19 C27 SING N N 25 A1BJB N19 C20 SING N N 26 A1BJB C13 O14 DOUB N N 27 A1BJB C13 N12 SING N N 28 A1BJB O39 C38 DOUB N N 29 A1BJB C27 C25 SING N N 30 A1BJB C20 C21 SING N N 31 A1BJB C21 N22 SING N N 32 A1BJB C04 O03 SING N N 33 A1BJB C38 O40 SING N N 34 A1BJB N12 C11 SING N N 35 A1BJB C10 C11 SING N N 36 A1BJB C25 N22 SING N N 37 A1BJB C25 O26 DOUB N N 38 A1BJB N22 C23 SING N N 39 A1BJB C11 B02 SING N N 40 A1BJB C24 C23 SING N N 41 A1BJB O03 B02 SING N N 42 A1BJB O01 B02 SING N N 43 A1BJB C10 H1 SING N N 44 A1BJB C10 H2 SING N N 45 A1BJB N12 H3 SING N N 46 A1BJB C15 H4 SING N N 47 A1BJB C20 H5 SING N N 48 A1BJB C20 H6 SING N N 49 A1BJB C21 H7 SING N N 50 A1BJB C21 H8 SING N N 51 A1BJB C24 H9 SING N N 52 A1BJB C24 H10 SING N N 53 A1BJB C24 H11 SING N N 54 A1BJB O01 H12 SING N N 55 A1BJB C06 H13 SING N N 56 A1BJB C07 H14 SING N N 57 A1BJB C08 H15 SING N N 58 A1BJB C11 H16 SING N N 59 A1BJB N16 H17 SING N N 60 A1BJB C23 H18 SING N N 61 A1BJB C23 H19 SING N N 62 A1BJB C30 H20 SING N N 63 A1BJB C31 H21 SING N N 64 A1BJB C33 H22 SING N N 65 A1BJB C34 H23 SING N N 66 A1BJB O36 H24 SING N N 67 A1BJB O40 H25 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJB SMILES ACDLabs 14.52 "O=C(O)c1ccc(cc1)C(NC(=O)N1CCN(CC)C(=O)C1=O)C(=O)NC1Cc2cccc(c2OB1O)C(=O)O" A1BJB InChI InChI 1.06 "InChI=1S/C25H25BN4O10/c1-2-29-10-11-30(22(33)21(29)32)25(38)28-18(13-6-8-14(9-7-13)23(34)35)20(31)27-17-12-15-4-3-5-16(24(36)37)19(15)40-26(17)39/h3-9,17-18,39H,2,10-12H2,1H3,(H,27,31)(H,28,38)(H,34,35)(H,36,37)/t17-,18+/m0/s1" A1BJB InChIKey InChI 1.06 HROYTATZRUUQQB-ZWKOTPCHSA-N A1BJB SMILES_CANONICAL CACTVS 3.385 "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H]2Cc3cccc(C(O)=O)c3OB2O)c4ccc(cc4)C(O)=O)C(=O)C1=O" A1BJB SMILES CACTVS 3.385 "CCN1CCN(C(=O)N[CH](C(=O)N[CH]2Cc3cccc(C(O)=O)c3OB2O)c4ccc(cc4)C(O)=O)C(=O)C1=O" A1BJB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "B1([C@H](Cc2cccc(c2O1)C(=O)O)NC(=O)[C@@H](c3ccc(cc3)C(=O)O)NC(=O)N4CCN(C(=O)C4=O)CC)O" A1BJB SMILES "OpenEye OEToolkits" 3.1.0.0 "B1(C(Cc2cccc(c2O1)C(=O)O)NC(=O)C(c3ccc(cc3)C(=O)O)NC(=O)N4CCN(C(=O)C4=O)CC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJB "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-({(2R)-2-(4-carboxyphenyl)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]acetyl}amino)-2-hydroxy-3,4-dihydro-2H-1,2-benzoxaborinine-8-carboxylic acid" A1BJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[[(2~{R})-2-(4-carboxyphenyl)-2-[[4-ethyl-2,3-bis(oxidanylidene)piperazin-1-yl]carbonylamino]ethanoyl]amino]-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJB "Create component" 2024-12-06 RCSB A1BJB "Initial release" 2025-01-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BJB _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #