data_A1BJC # _chem_comp.id A1BJC _chem_comp.name "(3R)-3-{[(2R)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]-2-(4-phosphonophenyl)acetyl]amino}-2-hydroxy-3,4-dihydro-2H-1,2-benzoxaborinine-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 B N4 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-06 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MCZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJC C10 C1 C 0 1 Y N N N N N -13.780 -5.404 -26.354 -1.519 3.110 -0.984 C10 A1BJC 1 A1BJC N12 N1 N 0 1 N N N N N N -14.540 -5.265 -22.245 -1.895 -0.908 0.056 N12 A1BJC 2 A1BJC C13 C2 C 0 1 N N N N N N -15.791 -4.562 -22.290 -3.056 -1.056 0.725 C13 A1BJC 3 A1BJC C17 C3 C 0 1 N N N N N N -19.107 -4.996 -20.784 -4.801 -3.454 -1.372 C17 A1BJC 4 A1BJC C20 C4 C 0 1 N N N N N N -20.798 -6.437 -18.633 -7.587 -5.221 -1.026 C20 A1BJC 5 A1BJC C21 C5 C 0 1 N N N N N N -18.139 -7.246 -20.794 -6.436 -2.422 0.113 C21 A1BJC 6 A1BJC C28 C6 C 0 1 N N R N N N -10.065 -5.059 -20.506 2.950 -0.604 -0.100 C28 A1BJC 7 A1BJC O01 O1 O 0 1 N N N N N N -13.121 -5.717 -29.274 -0.444 6.226 -1.287 O01 A1BJC 8 A1BJC P02 P1 P 0 1 N N N N N N -12.831 -4.325 -28.762 -1.403 5.785 -0.250 P02 A1BJC 9 A1BJC O03 O2 O 0 1 N N N N N N -13.953 -3.388 -29.145 -1.110 6.575 1.122 O03 A1BJC 10 A1BJC O04 O3 O 0 1 N N N N N N -11.424 -3.856 -29.145 -2.904 6.097 -0.740 O04 A1BJC 11 A1BJC C05 C7 C 0 1 Y N N N N N -12.933 -4.454 -26.915 -1.216 4.002 0.027 C05 A1BJC 12 A1BJC C06 C8 C 0 1 Y N N N N N -12.217 -3.559 -26.130 -0.771 3.535 1.250 C06 A1BJC 13 A1BJC C07 C9 C 0 1 Y N N N N N -12.335 -3.639 -24.739 -0.628 2.177 1.461 C07 A1BJC 14 A1BJC C08 C10 C 0 1 Y N N N N N -13.169 -4.622 -24.185 -0.932 1.285 0.449 C08 A1BJC 15 A1BJC C09 C11 C 0 1 Y N N N N N -13.905 -5.497 -24.973 -1.376 1.751 -0.773 C09 A1BJC 16 A1BJC C11 C12 C 0 1 N N R N N N -13.302 -4.653 -22.659 -0.776 -0.197 0.680 C11 A1BJC 17 A1BJC O14 O4 O 0 1 N N N N N N -15.933 -3.447 -22.663 -3.146 -0.681 1.877 O14 A1BJC 18 A1BJC N15 N2 N 0 1 N N N N N N -16.941 -5.299 -21.850 -4.117 -1.621 0.115 N15 A1BJC 19 A1BJC C16 C13 C 0 1 N N N N N N -18.403 -4.650 -21.862 -3.974 -2.179 -1.230 C16 A1BJC 20 A1BJC N18 N3 N 0 1 N N N N N N -19.235 -6.580 -20.500 -6.180 -3.222 -0.942 N18 A1BJC 21 A1BJC C19 C14 C 0 1 N N N N N N -20.428 -7.180 -19.920 -7.286 -3.861 -1.659 C19 A1BJC 22 A1BJC O22 O5 O 0 1 N N N N N N -18.080 -8.412 -20.611 -7.565 -2.311 0.542 O22 A1BJC 23 A1BJC C23 C15 C 0 1 N N N N N N -16.877 -6.542 -21.388 -5.307 -1.672 0.747 C23 A1BJC 24 A1BJC O24 O6 O 0 1 N N N N N N -15.848 -7.136 -21.384 -5.460 -1.117 1.815 O24 A1BJC 25 A1BJC C25 C16 C 0 1 N N N N N N -12.168 -5.318 -21.926 0.520 -0.667 0.071 C25 A1BJC 26 A1BJC O26 O7 O 0 1 N N N N N N -12.153 -6.482 -21.802 0.510 -1.512 -0.799 O26 A1BJC 27 A1BJC N27 N4 N 0 1 N N N N N N -11.205 -4.462 -21.268 1.690 -0.147 0.492 N27 A1BJC 28 A1BJC C29 C17 C 0 1 N N N N N N -9.381 -5.965 -21.534 3.872 0.590 -0.356 C29 A1BJC 29 A1BJC C30 C18 C 0 1 Y N N N N N -8.594 -4.993 -22.488 5.292 0.123 -0.559 C30 A1BJC 30 A1BJC C31 C19 C 0 1 Y N N N N N -8.617 -5.046 -23.891 6.154 0.990 -1.219 C31 A1BJC 31 A1BJC C32 C20 C 0 1 Y N N N N N -7.861 -4.083 -24.574 7.476 0.653 -1.437 C32 A1BJC 32 A1BJC C33 C21 C 0 1 Y N N N N N -7.103 -3.081 -23.904 7.961 -0.559 -0.998 C33 A1BJC 33 A1BJC C34 C22 C 0 1 Y N N N N N -7.139 -3.019 -22.512 7.108 -1.443 -0.338 C34 A1BJC 34 A1BJC C35 C23 C 0 1 N N N N N N -6.304 -1.992 -21.718 7.620 -2.742 0.135 C35 A1BJC 35 A1BJC O36 O8 O 0 1 N N N N N N -5.647 -2.430 -20.733 8.910 -3.074 -0.071 O36 A1BJC 36 A1BJC O37 O9 O 0 1 N N N N N N -6.176 -0.782 -22.056 6.879 -3.514 0.711 O37 A1BJC 37 A1BJC C38 C24 C 0 1 Y N N N N N -7.856 -3.998 -21.823 5.758 -1.099 -0.122 C38 A1BJC 38 A1BJC O39 O10 O 0 1 N N N N N N -7.946 -3.986 -20.394 4.986 -2.025 0.501 O39 A1BJC 39 A1BJC B40 B1 B 0 1 N N N N N N -9.220 -3.830 -19.950 3.705 -1.559 0.908 B40 A1BJC 40 A1BJC O41 O11 O 0 1 N N N N N N -9.703 -2.536 -20.102 3.135 -1.932 2.154 O41 A1BJC 41 A1BJC H1 H1 H 0 1 N N N N N N -14.341 -6.070 -26.992 -1.871 3.474 -1.938 H1 A1BJC 42 A1BJC H2 H2 H 0 1 N N N N N N -14.527 -6.209 -21.916 -1.801 -1.271 -0.838 H2 A1BJC 43 A1BJC H3 H3 H 0 1 N N N N N N -18.629 -4.535 -19.907 -4.798 -3.770 -2.414 H3 A1BJC 44 A1BJC H4 H4 H 0 1 N N N N N N -20.123 -4.592 -20.902 -4.360 -4.238 -0.756 H4 A1BJC 45 A1BJC H5 H5 H 0 1 N N N N N N -21.699 -6.890 -18.194 -6.702 -5.853 -1.086 H5 A1BJC 46 A1BJC H6 H6 H 0 1 N N N N N N -19.966 -6.508 -17.917 -7.864 -5.081 0.019 H6 A1BJC 47 A1BJC H7 H7 H 0 1 N N N N N N -20.994 -5.379 -18.864 -8.410 -5.696 -1.559 H7 A1BJC 48 A1BJC H8 H8 H 0 1 N N N N N N -10.435 -5.658 -19.661 2.753 -1.130 -1.034 H8 A1BJC 49 A1BJC H9 H9 H 0 1 N N N N N N -14.614 -3.867 -29.631 -1.703 6.335 1.848 H9 A1BJC 50 A1BJC H10 H10 H 0 1 N N N N N N -10.987 -4.538 -29.642 -3.076 7.034 -0.907 H10 A1BJC 51 A1BJC H11 H11 H 0 1 N N N N N N -11.581 -2.815 -26.586 -0.534 4.232 2.040 H11 A1BJC 52 A1BJC H12 H12 H 0 1 N N N N N N -11.793 -2.956 -24.102 -0.280 1.812 2.416 H12 A1BJC 53 A1BJC H13 H13 H 0 1 N N N N N N -14.558 -6.231 -24.524 -1.617 1.054 -1.562 H13 A1BJC 54 A1BJC H14 H14 H 0 1 N N N N N N -13.323 -3.605 -22.327 -0.769 -0.399 1.751 H14 A1BJC 55 A1BJC H15 H15 H 0 1 N N N N N N -18.306 -3.555 -21.888 -2.925 -2.408 -1.415 H15 A1BJC 56 A1BJC H16 H16 H 0 1 N N N N N N -18.937 -4.992 -22.761 -4.316 -1.446 -1.961 H16 A1BJC 57 A1BJC H17 H17 H 0 1 N N N N N N -21.260 -7.109 -20.636 -7.009 -4.000 -2.704 H17 A1BJC 58 A1BJC H18 H18 H 0 1 N N N N N N -20.232 -8.238 -19.690 -8.172 -3.228 -1.599 H18 A1BJC 59 A1BJC H19 H19 H 0 1 N N N N N N -11.302 -3.468 -21.323 1.698 0.529 1.187 H19 A1BJC 60 A1BJC H20 H20 H 0 1 N N N N N N -10.130 -6.538 -22.101 3.536 1.121 -1.247 H20 A1BJC 61 A1BJC H21 H21 H 0 1 N N N N N N -8.689 -6.659 -21.035 3.836 1.264 0.500 H21 A1BJC 62 A1BJC H22 H22 H 0 1 N N N N N N -9.190 -5.794 -24.419 5.784 1.943 -1.568 H22 A1BJC 63 A1BJC H23 H23 H 0 1 N N N N N N -7.853 -4.102 -25.654 8.130 1.341 -1.953 H23 A1BJC 64 A1BJC H24 H24 H 0 1 N N N N N N -6.508 -2.378 -24.467 8.995 -0.823 -1.164 H24 A1BJC 65 A1BJC H25 H25 H 0 1 N N N N N N -5.117 -1.731 -20.369 9.200 -3.936 0.258 H25 A1BJC 66 A1BJC H26 H26 H 0 1 N N N N N N -9.033 -1.992 -20.498 3.693 -2.519 2.682 H26 A1BJC 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJC O01 P02 DOUB N N 1 A1BJC O04 P02 SING N N 2 A1BJC O03 P02 SING N N 3 A1BJC P02 C05 SING N N 4 A1BJC C05 C10 DOUB Y N 5 A1BJC C05 C06 SING Y N 6 A1BJC C10 C09 SING Y N 7 A1BJC C06 C07 DOUB Y N 8 A1BJC C09 C08 DOUB Y N 9 A1BJC C07 C08 SING Y N 10 A1BJC C32 C33 DOUB Y N 11 A1BJC C32 C31 SING Y N 12 A1BJC C08 C11 SING N N 13 A1BJC C33 C34 SING Y N 14 A1BJC C31 C30 DOUB Y N 15 A1BJC O14 C13 DOUB N N 16 A1BJC C11 N12 SING N N 17 A1BJC C11 C25 SING N N 18 A1BJC C34 C38 DOUB Y N 19 A1BJC C34 C35 SING N N 20 A1BJC C30 C38 SING Y N 21 A1BJC C30 C29 SING N N 22 A1BJC C13 N12 SING N N 23 A1BJC C13 N15 SING N N 24 A1BJC O37 C35 DOUB N N 25 A1BJC C25 O26 DOUB N N 26 A1BJC C25 N27 SING N N 27 A1BJC C16 N15 SING N N 28 A1BJC C16 C17 SING N N 29 A1BJC N15 C23 SING N N 30 A1BJC C38 O39 SING N N 31 A1BJC C35 O36 SING N N 32 A1BJC C29 C28 SING N N 33 A1BJC C23 O24 DOUB N N 34 A1BJC C23 C21 SING N N 35 A1BJC N27 C28 SING N N 36 A1BJC C21 O22 DOUB N N 37 A1BJC C21 N18 SING N N 38 A1BJC C17 N18 SING N N 39 A1BJC C28 B40 SING N N 40 A1BJC N18 C19 SING N N 41 A1BJC O39 B40 SING N N 42 A1BJC O41 B40 SING N N 43 A1BJC C19 C20 SING N N 44 A1BJC C10 H1 SING N N 45 A1BJC N12 H2 SING N N 46 A1BJC C17 H3 SING N N 47 A1BJC C17 H4 SING N N 48 A1BJC C20 H5 SING N N 49 A1BJC C20 H6 SING N N 50 A1BJC C20 H7 SING N N 51 A1BJC C28 H8 SING N N 52 A1BJC O03 H9 SING N N 53 A1BJC O04 H10 SING N N 54 A1BJC C06 H11 SING N N 55 A1BJC C07 H12 SING N N 56 A1BJC C09 H13 SING N N 57 A1BJC C11 H14 SING N N 58 A1BJC C16 H15 SING N N 59 A1BJC C16 H16 SING N N 60 A1BJC C19 H17 SING N N 61 A1BJC C19 H18 SING N N 62 A1BJC N27 H19 SING N N 63 A1BJC C29 H20 SING N N 64 A1BJC C29 H21 SING N N 65 A1BJC C31 H22 SING N N 66 A1BJC C32 H23 SING N N 67 A1BJC C33 H24 SING N N 68 A1BJC O36 H25 SING N N 69 A1BJC O41 H26 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJC SMILES ACDLabs 14.52 "O=P(O)(O)c1ccc(cc1)C(NC(=O)N1CCN(CC)C(=O)C1=O)C(=O)NC1Cc2cccc(c2OB1O)C(=O)O" A1BJC InChI InChI 1.06 "InChI=1S/C24H26BN4O11P/c1-2-28-10-11-29(22(32)21(28)31)24(35)27-18(13-6-8-15(9-7-13)41(37,38)39)20(30)26-17-12-14-4-3-5-16(23(33)34)19(14)40-25(17)36/h3-9,17-18,36H,2,10-12H2,1H3,(H,26,30)(H,27,35)(H,33,34)(H2,37,38,39)/t17-,18+/m0/s1" A1BJC InChIKey InChI 1.06 XZMSMKVMMWSBQP-ZWKOTPCHSA-N A1BJC SMILES_CANONICAL CACTVS 3.385 "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H]2Cc3cccc(C(O)=O)c3OB2O)c4ccc(cc4)[P](O)(O)=O)C(=O)C1=O" A1BJC SMILES CACTVS 3.385 "CCN1CCN(C(=O)N[CH](C(=O)N[CH]2Cc3cccc(C(O)=O)c3OB2O)c4ccc(cc4)[P](O)(O)=O)C(=O)C1=O" A1BJC SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "B1([C@H](Cc2cccc(c2O1)C(=O)O)NC(=O)[C@@H](c3ccc(cc3)P(=O)(O)O)NC(=O)N4CCN(C(=O)C4=O)CC)O" A1BJC SMILES "OpenEye OEToolkits" 3.1.0.0 "B1(C(Cc2cccc(c2O1)C(=O)O)NC(=O)C(c3ccc(cc3)P(=O)(O)O)NC(=O)N4CCN(C(=O)C4=O)CC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJC "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-{[(2R)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]-2-(4-phosphonophenyl)acetyl]amino}-2-hydroxy-3,4-dihydro-2H-1,2-benzoxaborinine-8-carboxylic acid" A1BJC "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[[(2~{R})-2-[[4-ethyl-2,3-bis(oxidanylidene)piperazin-1-yl]carbonylamino]-2-(4-phosphonophenyl)ethanoyl]amino]-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJC "Create component" 2024-12-06 RCSB A1BJC "Initial release" 2025-01-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BJC _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B40 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #