data_A1BJJ # _chem_comp.id A1BJJ _chem_comp.name "(4R)-N-[(1s,4S)-4-(3-hydroxy-2-methylbenzamido)cyclohexyl]imidazo[1,2-a]pyrimidine-7-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.439 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HQ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJJ C3 C1 C 0 1 Y N N N N N -55.489 -27.725 10.456 -4.273 0.505 0.183 C3 A1BJJ 1 A1BJJ C6 C2 C 0 1 N N N N N N -54.217 -30.613 8.355 -1.279 -1.783 0.681 C6 A1BJJ 2 A1BJJ C9 C3 C 0 1 N N N N N N -51.634 -30.508 6.938 1.410 -2.935 0.516 C9 A1BJJ 3 A1BJJ C12 C4 C 0 1 Y N N N N N -48.505 -29.489 5.114 4.139 -0.436 -0.366 C12 A1BJJ 4 A1BJJ C14 C5 C 0 1 Y N N N N N -46.366 -29.330 5.975 4.473 1.764 0.258 C14 A1BJJ 5 A1BJJ C17 C6 C 0 1 Y N N N N N -44.481 -29.161 4.821 6.127 3.086 -0.349 C17 A1BJJ 6 A1BJJ C23 C7 C 0 1 N N N N N N -53.061 -31.541 8.720 -0.315 -1.737 1.869 C23 A1BJJ 7 A1BJJ C19 C8 C 0 1 Y N N N N N -46.688 -29.255 3.603 6.039 0.739 -1.204 C19 A1BJJ 8 A1BJJ C1 C9 C 0 1 N N N N N N -57.396 -28.730 11.818 -5.856 -0.702 -1.355 C1 A1BJJ 9 A1BJJ C27 C10 C 0 1 Y N N N N N -55.378 -25.516 12.128 -5.954 2.708 0.282 C27 A1BJJ 10 A1BJJ C11 C11 C 0 1 N N N N N N -49.946 -29.779 5.307 3.331 -1.677 -0.297 C11 A1BJJ 11 A1BJJ C16 C12 C 0 1 Y N N N N N -44.228 -29.222 6.151 5.290 3.761 0.474 C16 A1BJJ 12 A1BJJ C2 C13 C 0 1 Y N N N N N -56.382 -27.649 11.535 -5.472 0.499 -0.531 C2 A1BJJ 13 A1BJJ C20 C14 C 0 1 Y N N N N N -48.009 -29.379 3.789 5.311 -0.402 -1.152 C20 A1BJJ 14 A1BJJ C22 C15 C 0 1 N N N N N N -51.702 -30.930 8.391 0.612 -2.953 1.821 C22 A1BJJ 15 A1BJJ C25 C16 C 0 1 Y N N N N N -54.558 -26.714 10.221 -3.925 1.621 0.944 C25 A1BJJ 16 A1BJJ C26 C17 C 0 1 Y N N N N N -54.507 -25.613 11.058 -4.766 2.714 0.989 C26 A1BJJ 17 A1BJJ C28 C18 C 0 1 Y N N N N N -56.304 -26.523 12.360 -6.309 1.601 -0.478 C28 A1BJJ 18 A1BJJ C4 C19 C 0 1 N N N N N N -55.504 -28.874 9.498 -3.377 -0.671 0.137 C4 A1BJJ 19 A1BJJ C7 C20 C 0 1 N N N N N N -54.100 -30.104 6.921 -0.481 -1.766 -0.624 C7 A1BJJ 20 A1BJJ C8 C21 C 0 1 N N N N N N -52.726 -29.505 6.634 0.446 -2.982 -0.672 C8 A1BJJ 21 A1BJJ N10 N1 N 0 1 N N N N N N -50.305 -30.023 6.574 2.209 -1.709 0.449 N10 A1BJJ 22 A1BJJ N13 N2 N 0 1 Y N N N N N -47.700 -29.456 6.194 3.759 0.635 0.305 N13 A1BJJ 23 A1BJJ N15 N3 N 0 1 Y N N N N N -45.393 -29.327 6.884 4.297 2.947 0.832 N15 A1BJJ 24 A1BJJ N18 N4 N 0 1 Y N N N N N -45.850 -29.229 4.695 5.621 1.828 -0.494 N18 A1BJJ 25 A1BJJ N5 N5 N 0 1 N N N N N N -54.338 -29.502 9.296 -2.167 -0.619 0.727 N5 A1BJJ 26 A1BJJ O21 O1 O 0 1 N N N N N N -50.736 -29.786 4.362 3.680 -2.664 -0.914 O21 A1BJJ 27 A1BJJ O24 O2 O 0 1 N N N N N N -56.540 -29.212 8.932 -3.733 -1.684 -0.433 O24 A1BJJ 28 A1BJJ O29 O3 O 0 1 N N N N N N -57.179 -26.446 13.395 -7.478 1.600 -1.171 O29 A1BJJ 29 A1BJJ H6 H1 H 0 1 N N N N N N -55.140 -31.208 8.413 -1.874 -2.695 0.731 H6 A1BJJ 30 A1BJJ H9 H2 H 0 1 N N N N N N -51.840 -31.403 6.333 2.070 -3.802 0.482 H9 A1BJJ 31 A1BJJ H17 H3 H 0 1 N N N N N N -43.757 -29.076 4.024 7.025 3.472 -0.808 H17 A1BJJ 32 A1BJJ H23A H4 H 0 0 N N N N N N -53.103 -31.751 9.799 0.279 -0.825 1.819 H23A A1BJJ 33 A1BJJ H23B H5 H 0 0 N N N N N N -53.171 -32.481 8.159 -0.884 -1.749 2.799 H23B A1BJJ 34 A1BJJ H19 H6 H 0 1 N N N N N N -46.284 -29.176 2.605 6.939 0.787 -1.799 H19 A1BJJ 35 A1BJJ H1A H7 H 0 1 N N N N N N -56.954 -29.481 12.490 -6.328 -1.447 -0.714 H1A A1BJJ 36 A1BJJ H1B H8 H 0 1 N N N N N N -58.281 -28.286 12.297 -6.555 -0.400 -2.135 H1B A1BJJ 37 A1BJJ H1C H9 H 0 1 N N N N N N -57.692 -29.211 10.874 -4.964 -1.130 -1.812 H1C A1BJJ 38 A1BJJ H27 H10 H 0 1 N N N N N N -55.337 -24.658 12.782 -6.608 3.566 0.321 H27 A1BJJ 39 A1BJJ H16 H11 H 0 1 N N N N N N -43.239 -29.192 6.583 5.408 4.787 0.788 H16 A1BJJ 40 A1BJJ H20 H12 H 0 1 N N N N N N -48.684 -29.395 2.946 5.624 -1.275 -1.706 H20 A1BJJ 41 A1BJJ H22B H13 H 0 0 N N N N N N -50.916 -31.674 8.587 0.017 -3.865 1.871 H22B A1BJJ 42 A1BJJ H22A H14 H 0 0 N N N N N N -51.540 -30.049 9.029 1.298 -2.920 2.667 H22A A1BJJ 43 A1BJJ H25 H15 H 0 1 N N N N N N -53.877 -26.790 9.386 -2.998 1.630 1.498 H25 A1BJJ 44 A1BJJ H26 H16 H 0 1 N N N N N N -53.787 -24.829 10.876 -4.495 3.578 1.579 H26 A1BJJ 45 A1BJJ H7B H17 H 0 1 N N N N N N -54.865 -29.331 6.755 -1.168 -1.799 -1.470 H7B A1BJJ 46 A1BJJ H7A H18 H 0 1 N N N N N N -54.272 -30.944 6.232 0.114 -0.854 -0.674 H7A A1BJJ 47 A1BJJ H8A H19 H 0 1 N N N N N N -52.670 -29.220 5.573 1.015 -2.970 -1.602 H8A A1BJJ 48 A1BJJ H8B H20 H 0 1 N N N N N N -52.582 -28.613 7.261 -0.149 -3.894 -0.622 H8B A1BJJ 49 A1BJJ H10 H21 H 0 1 N N N N N N -49.636 -29.867 7.301 1.930 -0.921 0.941 H10 A1BJJ 50 A1BJJ H5 H22 H 0 1 N N N N N N -53.529 -29.203 9.802 -1.883 0.190 1.181 H5 A1BJJ 51 A1BJJ H29 H23 H 0 1 N N N N N N -57.028 -25.642 13.878 -7.403 1.947 -2.070 H29 A1BJJ 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJJ C19 C20 DOUB Y N 1 A1BJJ C19 N18 SING Y N 2 A1BJJ C20 C12 SING Y N 3 A1BJJ O21 C11 DOUB N N 4 A1BJJ N18 C17 SING Y N 5 A1BJJ N18 C14 SING Y N 6 A1BJJ C17 C16 DOUB Y N 7 A1BJJ C12 C11 SING N N 8 A1BJJ C12 N13 DOUB Y N 9 A1BJJ C11 N10 SING N N 10 A1BJJ C14 N13 SING Y N 11 A1BJJ C14 N15 DOUB Y N 12 A1BJJ C16 N15 SING Y N 13 A1BJJ N10 C9 SING N N 14 A1BJJ C8 C7 SING N N 15 A1BJJ C8 C9 SING N N 16 A1BJJ C7 C6 SING N N 17 A1BJJ C9 C22 SING N N 18 A1BJJ C6 C23 SING N N 19 A1BJJ C6 N5 SING N N 20 A1BJJ C22 C23 SING N N 21 A1BJJ O24 C4 DOUB N N 22 A1BJJ N5 C4 SING N N 23 A1BJJ C4 C3 SING N N 24 A1BJJ C25 C3 DOUB Y N 25 A1BJJ C25 C26 SING Y N 26 A1BJJ C3 C2 SING Y N 27 A1BJJ C26 C27 DOUB Y N 28 A1BJJ C2 C1 SING N N 29 A1BJJ C2 C28 DOUB Y N 30 A1BJJ C27 C28 SING Y N 31 A1BJJ C28 O29 SING N N 32 A1BJJ C6 H6 SING N N 33 A1BJJ C9 H9 SING N N 34 A1BJJ C17 H17 SING N N 35 A1BJJ C23 H23A SING N N 36 A1BJJ C23 H23B SING N N 37 A1BJJ C19 H19 SING N N 38 A1BJJ C1 H1A SING N N 39 A1BJJ C1 H1B SING N N 40 A1BJJ C1 H1C SING N N 41 A1BJJ C27 H27 SING N N 42 A1BJJ C16 H16 SING N N 43 A1BJJ C20 H20 SING N N 44 A1BJJ C22 H22B SING N N 45 A1BJJ C22 H22A SING N N 46 A1BJJ C25 H25 SING N N 47 A1BJJ C26 H26 SING N N 48 A1BJJ C7 H7B SING N N 49 A1BJJ C7 H7A SING N N 50 A1BJJ C8 H8A SING N N 51 A1BJJ C8 H8B SING N N 52 A1BJJ N10 H10 SING N N 53 A1BJJ N5 H5 SING N N 54 A1BJJ O29 H29 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJJ SMILES ACDLabs 14.52 "Oc1cccc(c1C)C(=O)NC1CCC(CC1)NC(=O)c1nc2nccn2cc1" A1BJJ InChI InChI 1.06 "InChI=1S/C21H23N5O3/c1-13-16(3-2-4-18(13)27)19(28)23-14-5-7-15(8-6-14)24-20(29)17-9-11-26-12-10-22-21(26)25-17/h2-4,9-12,14-15,27H,5-8H2,1H3,(H,23,28)(H,24,29)/t14-,15+" A1BJJ InChIKey InChI 1.06 UJXBFTGIOPBZIW-GASCZTMLSA-N A1BJJ SMILES_CANONICAL CACTVS 3.385 "Cc1c(O)cccc1C(=O)N[C@@H]2CC[C@@H](CC2)NC(=O)c3ccn4ccnc4n3" A1BJJ SMILES CACTVS 3.385 "Cc1c(O)cccc1C(=O)N[CH]2CC[CH](CC2)NC(=O)c3ccn4ccnc4n3" A1BJJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(cccc1O)C(=O)NC2CCC(CC2)NC(=O)c3ccn4ccnc4n3" A1BJJ SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(cccc1O)C(=O)NC2CCC(CC2)NC(=O)c3ccn4ccnc4n3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJJ "SYSTEMATIC NAME" ACDLabs 14.52 "(4R)-N-[(1s,4S)-4-(3-hydroxy-2-methylbenzamido)cyclohexyl]imidazo[1,2-a]pyrimidine-7-carboxamide" A1BJJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[4-[(2-methyl-3-oxidanyl-phenyl)carbonylamino]cyclohexyl]imidazo[1,2-a]pyrimidine-7-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJJ "Create component" 2024-12-09 RCSB A1BJJ "Initial release" 2025-08-20 RCSB #