data_A1BJK # _chem_comp.id A1BJK _chem_comp.name "phenyl(4-{[(9H-purin-6-yl)sulfanyl]methyl}phenyl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H14 N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.406 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HQD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJK N2 N1 N 0 1 Y N N N N N -46.430 -29.522 3.306 6.222 -0.496 -1.203 N2 A1BJK 1 A1BJK C3 C1 C 0 1 Y N N N N N -54.790 -26.256 10.540 -4.765 1.424 -0.010 C3 A1BJK 2 A1BJK C6 C2 C 0 1 Y N N N N N -56.848 -26.938 12.277 -7.417 0.874 -0.613 C6 A1BJK 3 A1BJK C9 C3 C 0 1 Y N N N N N -52.950 -28.830 9.433 -2.467 -0.075 -0.603 C9 A1BJK 4 A1BJK C12 C4 C 0 1 N N N N N N -50.180 -30.247 7.238 1.182 -1.032 -0.670 C12 A1BJK 5 A1BJK C14 C5 C 0 1 Y N N N N N -47.766 -29.369 3.418 5.178 -1.132 -1.691 C14 A1BJK 6 A1BJK C17 C6 C 0 1 Y N N N N N -44.332 -29.522 6.209 6.197 1.823 1.450 C17 A1BJK 7 A1BJK C19 C7 C 0 1 Y N N N N N -53.818 -29.103 7.228 -2.110 -1.872 0.972 C19 A1BJK 8 A1BJK C1 C8 C 0 1 N N N N N N -55.333 -28.184 9.029 -4.403 -0.933 0.710 C1 A1BJK 9 A1BJK C10 C9 C 0 1 Y N N N N N -51.720 -29.324 9.009 -1.127 -0.103 -0.928 C10 A1BJK 10 A1BJK C11 C10 C 0 1 Y N N N N N -51.503 -29.722 7.693 -0.281 -1.007 -0.309 C11 A1BJK 11 A1BJK C13 C11 C 0 1 Y N N N N N -47.894 -29.170 5.741 3.722 -0.123 -0.210 C13 A1BJK 12 A1BJK C15 C12 C 0 1 Y N N N N N -45.813 -29.493 4.525 6.085 0.360 -0.195 C15 A1BJK 13 A1BJK C16 C13 C 0 1 Y N N N N N -46.481 -29.321 5.778 4.807 0.579 0.345 C16 A1BJK 14 A1BJK C18 C14 C 0 1 Y N N N N N -52.581 -29.597 6.808 -0.772 -1.889 0.638 C18 A1BJK 15 A1BJK C2 C15 C 0 1 Y N N N N N -55.589 -27.365 10.254 -5.275 0.139 0.186 C2 A1BJK 16 A1BJK C4 C16 C 0 1 Y N N N N N -55.030 -25.502 11.681 -5.584 2.420 -0.500 C4 A1BJK 17 A1BJK C5 C17 C 0 1 Y N N N N N -56.055 -25.831 12.558 -6.907 2.146 -0.800 C5 A1BJK 18 A1BJK C7 C18 C 0 1 Y N N N N N -56.612 -27.700 11.134 -6.612 -0.129 -0.114 C7 A1BJK 19 A1BJK C8 C19 C 0 1 Y N N N N N -54.020 -28.710 8.547 -2.969 -0.958 0.357 C8 A1BJK 20 A1BJK N1 N2 N 0 1 Y N N N N N -48.522 -29.200 4.557 3.958 -0.959 -1.217 N1 A1BJK 21 A1BJK N3 N3 N 0 1 Y N N N N N -45.529 -29.348 6.814 4.945 1.482 1.345 N3 A1BJK 22 A1BJK N4 N4 N 0 1 Y N N N N N -44.457 -29.618 4.810 6.940 1.158 0.522 N4 A1BJK 23 A1BJK O1 O1 O 0 1 N N N N N N -56.315 -28.473 8.360 -4.866 -1.794 1.432 O1 A1BJK 24 A1BJK S1 S1 S 0 1 N N N N N N -48.838 -28.956 7.220 2.090 0.099 0.414 S1 A1BJK 25 A1BJK H1 H1 H 0 1 N N N N N N -53.985 -25.985 9.873 -3.733 1.639 0.224 H1 A1BJK 26 A1BJK H4 H2 H 0 1 N N N N N N -57.650 -27.209 12.947 -8.451 0.667 -0.850 H4 A1BJK 27 A1BJK H6 H3 H 0 1 N N N N N N -53.078 -28.535 10.464 -3.126 0.631 -1.086 H6 A1BJK 28 A1BJK H9 H4 H 0 1 N N N N N N -50.295 -30.645 6.219 1.570 -2.043 -0.546 H9 A1BJK 29 A1BJK H8 H5 H 0 1 N N N N N N -49.875 -31.058 7.916 1.306 -0.719 -1.707 H8 A1BJK 30 A1BJK H10 H6 H 0 1 N N N N N N -48.317 -29.381 2.489 5.325 -1.821 -2.510 H10 A1BJK 31 A1BJK H11 H7 H 0 1 N N N N N N -43.391 -29.580 6.737 6.588 2.529 2.168 H11 A1BJK 32 A1BJK H14 H8 H 0 1 N N N N N N -54.629 -29.025 6.519 -2.493 -2.563 1.708 H14 A1BJK 33 A1BJK H7 H9 H 0 1 N N N N N N -50.911 -29.401 9.721 -0.737 0.582 -1.666 H7 A1BJK 34 A1BJK H13 H10 H 0 1 N N N N N N -52.453 -29.890 5.776 -0.107 -2.595 1.112 H13 A1BJK 35 A1BJK H2 H11 H 0 1 N N N N N N -54.408 -24.644 11.890 -5.193 3.416 -0.648 H2 A1BJK 36 A1BJK H3 H12 H 0 1 N N N N N N -56.233 -25.238 13.443 -7.542 2.928 -1.192 H3 A1BJK 37 A1BJK H5 H13 H 0 1 N N N N N N -57.231 -28.561 10.929 -7.013 -1.121 0.036 H5 A1BJK 38 A1BJK H12 H15 H 0 1 N N N N N N -43.717 -29.750 4.151 7.898 1.234 0.392 H12 A1BJK 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJK N2 C14 DOUB Y N 1 A1BJK N2 C15 SING Y N 2 A1BJK C14 N1 SING Y N 3 A1BJK C15 N4 SING Y N 4 A1BJK C15 C16 DOUB Y N 5 A1BJK N1 C13 DOUB Y N 6 A1BJK N4 C17 SING Y N 7 A1BJK C13 C16 SING Y N 8 A1BJK C13 S1 SING N N 9 A1BJK C16 N3 SING Y N 10 A1BJK C17 N3 DOUB Y N 11 A1BJK C18 C19 DOUB Y N 12 A1BJK C18 C11 SING Y N 13 A1BJK S1 C12 SING N N 14 A1BJK C19 C8 SING Y N 15 A1BJK C12 C11 SING N N 16 A1BJK C11 C10 DOUB Y N 17 A1BJK O1 C1 DOUB N N 18 A1BJK C8 C1 SING N N 19 A1BJK C8 C9 DOUB Y N 20 A1BJK C10 C9 SING Y N 21 A1BJK C1 C2 SING N N 22 A1BJK C2 C3 DOUB Y N 23 A1BJK C2 C7 SING Y N 24 A1BJK C3 C4 SING Y N 25 A1BJK C7 C6 DOUB Y N 26 A1BJK C4 C5 DOUB Y N 27 A1BJK C6 C5 SING Y N 28 A1BJK C3 H1 SING N N 29 A1BJK C6 H4 SING N N 30 A1BJK C9 H6 SING N N 31 A1BJK C12 H9 SING N N 32 A1BJK C12 H8 SING N N 33 A1BJK C14 H10 SING N N 34 A1BJK C17 H11 SING N N 35 A1BJK C19 H14 SING N N 36 A1BJK C10 H7 SING N N 37 A1BJK C18 H13 SING N N 38 A1BJK C4 H2 SING N N 39 A1BJK C5 H3 SING N N 40 A1BJK C7 H5 SING N N 41 A1BJK N4 H12 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJK SMILES ACDLabs 14.52 "O=C(c1ccccc1)c1ccc(cc1)CSc1ncnc2[NH]cnc21" A1BJK InChI InChI 1.06 "InChI=1S/C19H14N4OS/c24-17(14-4-2-1-3-5-14)15-8-6-13(7-9-15)10-25-19-16-18(21-11-20-16)22-12-23-19/h1-9,11-12H,10H2,(H,20,21,22,23)" A1BJK InChIKey InChI 1.06 CNEQQMVCKRNNAJ-UHFFFAOYSA-N A1BJK SMILES_CANONICAL CACTVS 3.385 "O=C(c1ccccc1)c2ccc(CSc3ncnc4[nH]cnc34)cc2" A1BJK SMILES CACTVS 3.385 "O=C(c1ccccc1)c2ccc(CSc3ncnc4[nH]cnc34)cc2" A1BJK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)c2ccc(cc2)CSc3c4c([nH]cn4)ncn3" A1BJK SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C(=O)c2ccc(cc2)CSc3c4c([nH]cn4)ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJK "SYSTEMATIC NAME" ACDLabs 14.52 "phenyl(4-{[(9H-purin-6-yl)sulfanyl]methyl}phenyl)methanone" A1BJK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "phenyl-[4-(9~{H}-purin-6-ylsulfanylmethyl)phenyl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJK "Create component" 2024-12-09 RCSB A1BJK "Initial release" 2025-08-20 RCSB #