data_A1BJL # _chem_comp.id A1BJL _chem_comp.name "[(5S)-7-(2-amino-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-7-azaspiro[3.5]nonan-5-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 287.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HQB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJL N2 N1 N 0 1 Y N N N N N -44.677 -29.482 5.034 -1.438 -1.425 -0.184 N2 A1BJL 1 A1BJL C3 C1 C 0 1 N N N N N N -46.721 -29.322 2.006 0.401 1.432 -0.479 C3 A1BJL 2 A1BJL C6 C2 C 0 1 N N N N N N -44.725 -31.868 -0.447 3.297 0.610 -1.515 C6 A1BJL 3 A1BJL C9 C3 C 0 1 N N S N N N -43.890 -30.292 1.522 2.422 -0.305 0.712 C9 A1BJL 4 A1BJL C12 C4 C 0 1 Y N N N N N -47.023 -29.028 5.035 -2.313 0.713 0.235 C12 A1BJL 5 A1BJL C14 C5 C 0 1 Y N N N N N -49.061 -28.736 6.024 -3.800 2.388 0.477 C14 A1BJL 6 A1BJL C1 C6 C 0 1 Y N N N N N -44.711 -29.643 6.382 -2.668 -1.864 -0.420 C1 A1BJL 7 A1BJL C10 C7 C 0 1 N N N N N N -43.640 -31.567 2.425 3.458 -1.409 0.490 C10 A1BJL 8 A1BJL C11 C8 C 0 1 N N N N N N -44.261 -29.072 2.421 1.046 -0.792 0.247 C11 A1BJL 9 A1BJL C13 C9 C 0 1 Y N N N N N -48.420 -28.702 4.789 -2.485 2.130 0.555 C13 A1BJL 10 A1BJL C15 C10 C 0 1 Y N N N N N -46.916 -29.222 6.454 -3.600 0.209 -0.022 C15 A1BJL 11 A1BJL C2 C11 C 0 1 Y N N N N N -45.787 -29.184 4.356 -1.215 -0.157 0.144 C2 A1BJL 12 A1BJL C4 C12 C 0 1 N N N N N N -46.415 -30.416 0.960 1.746 2.026 -0.049 C4 A1BJL 13 A1BJL C5 C13 C 0 1 N N N N N N -44.976 -30.574 0.407 2.812 0.932 -0.097 C5 A1BJL 14 A1BJL C7 C14 C 0 1 N N N N N N -45.115 -31.102 -1.733 4.711 0.501 -0.919 C7 A1BJL 15 A1BJL C8 C15 C 0 1 N N N N N N -44.787 -29.824 -0.967 4.228 1.440 0.201 C8 A1BJL 16 A1BJL N1 N2 N 0 1 N N N N N N -43.484 -29.967 7.008 -2.848 -3.195 -0.758 N1 A1BJL 17 A1BJL N3 N3 N 0 1 N N N N N N -45.625 -29.043 2.937 0.069 0.295 0.389 N3 A1BJL 18 A1BJL N4 N4 N 0 1 Y N N N N N -48.144 -29.035 6.993 -4.478 1.245 0.132 N4 A1BJL 19 A1BJL N5 N5 N 0 1 Y N N N N N -45.813 -29.534 7.150 -3.729 -1.078 -0.344 N5 A1BJL 20 A1BJL O1 O1 O 0 1 N N N N N N -42.958 -31.214 3.632 3.086 -2.568 1.237 O1 A1BJL 21 A1BJL H5 H1 H 0 1 N N N N N N -46.960 -28.392 1.469 -0.375 2.193 -0.395 H5 A1BJL 22 A1BJL H4 H2 H 0 1 N N N N N N -47.595 -29.643 2.592 0.468 1.093 -1.513 H4 A1BJL 23 A1BJL H9 H3 H 0 1 N N N N N N -45.397 -32.704 -0.202 2.913 -0.333 -1.905 H9 A1BJL 24 A1BJL H8 H4 H 0 1 N N N N N N -43.683 -32.219 -0.433 3.179 1.436 -2.216 H8 A1BJL 25 A1BJL H1 H5 H 0 1 N N N N N N -42.944 -30.057 1.011 2.381 -0.051 1.771 H1 A1BJL 26 A1BJL H20 H6 H 0 1 N N N N N N -50.113 -28.555 6.190 -4.256 3.350 0.660 H20 A1BJL 27 A1BJL H14 H7 H 0 1 N N N N N N -44.608 -32.023 2.679 3.501 -1.658 -0.570 H14 A1BJL 28 A1BJL H15 H8 H 0 1 N N N N N N -43.029 -32.290 1.865 4.436 -1.061 0.821 H15 A1BJL 29 A1BJL H18 H9 H 0 1 N N N N N N -43.576 -29.069 3.282 1.102 -1.096 -0.798 H18 A1BJL 30 A1BJL H17 H10 H 0 1 N N N N N N -44.107 -28.159 1.827 0.736 -1.641 0.856 H17 A1BJL 31 A1BJL H19 H11 H 0 1 N N N N N N -48.871 -28.477 3.834 -1.705 2.833 0.807 H19 A1BJL 32 A1BJL H6 H12 H 0 1 N N N N N N -47.068 -30.222 0.096 2.022 2.834 -0.727 H6 A1BJL 33 A1BJL H7 H13 H 0 1 N N N N N N -46.688 -31.379 1.417 1.666 2.415 0.966 H7 A1BJL 34 A1BJL H10 H14 H 0 1 N N N N N N -46.169 -31.205 -2.030 4.961 -0.501 -0.570 H10 A1BJL 35 A1BJL H11 H15 H 0 1 N N N N N N -44.469 -31.299 -2.601 5.485 0.936 -1.549 H11 A1BJL 36 A1BJL H12 H16 H 0 1 N N N N N N -43.765 -29.453 -1.136 4.369 2.497 -0.024 H12 A1BJL 37 A1BJL H13 H17 H 0 1 N N N N N N -45.506 -29.008 -1.132 4.592 1.164 1.190 H13 A1BJL 38 A1BJL H2 H18 H 0 1 N N N N N N -42.763 -30.026 6.318 -2.082 -3.787 -0.818 H2 A1BJL 39 A1BJL H3 H19 H 0 1 N N N N N N -43.252 -29.257 7.673 -3.739 -3.534 -0.934 H3 A1BJL 40 A1BJL H21 H20 H 0 1 N N N N N N -48.352 -29.106 7.969 -5.439 1.183 0.015 H21 A1BJL 41 A1BJL H16 H21 H 0 1 N N N N N N -42.819 -31.993 4.157 3.699 -3.310 1.144 H16 A1BJL 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJL C7 C8 SING N N 1 A1BJL C7 C6 SING N N 2 A1BJL C8 C5 SING N N 3 A1BJL C6 C5 SING N N 4 A1BJL C5 C4 SING N N 5 A1BJL C5 C9 SING N N 6 A1BJL C4 C3 SING N N 7 A1BJL C9 C11 SING N N 8 A1BJL C9 C10 SING N N 9 A1BJL C3 N3 SING N N 10 A1BJL C11 N3 SING N N 11 A1BJL C10 O1 SING N N 12 A1BJL N3 C2 SING N N 13 A1BJL C2 N2 DOUB Y N 14 A1BJL C2 C12 SING Y N 15 A1BJL C13 C12 SING Y N 16 A1BJL C13 C14 DOUB Y N 17 A1BJL N2 C1 SING Y N 18 A1BJL C12 C15 DOUB Y N 19 A1BJL C14 N4 SING Y N 20 A1BJL C1 N1 SING N N 21 A1BJL C1 N5 DOUB Y N 22 A1BJL C15 N4 SING Y N 23 A1BJL C15 N5 SING Y N 24 A1BJL C3 H5 SING N N 25 A1BJL C3 H4 SING N N 26 A1BJL C6 H9 SING N N 27 A1BJL C6 H8 SING N N 28 A1BJL C9 H1 SING N N 29 A1BJL C14 H20 SING N N 30 A1BJL C10 H14 SING N N 31 A1BJL C10 H15 SING N N 32 A1BJL C11 H18 SING N N 33 A1BJL C11 H17 SING N N 34 A1BJL C13 H19 SING N N 35 A1BJL C4 H6 SING N N 36 A1BJL C4 H7 SING N N 37 A1BJL C7 H10 SING N N 38 A1BJL C7 H11 SING N N 39 A1BJL C8 H12 SING N N 40 A1BJL C8 H13 SING N N 41 A1BJL N1 H2 SING N N 42 A1BJL N1 H3 SING N N 43 A1BJL N4 H21 SING N N 44 A1BJL O1 H16 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJL SMILES ACDLabs 14.52 "Nc1nc2[NH]ccc2c(n1)N1CCC2(CCC2)C(C1)CO" A1BJL InChI InChI 1.06 "InChI=1S/C15H21N5O/c16-14-18-12-11(2-6-17-12)13(19-14)20-7-5-15(3-1-4-15)10(8-20)9-21/h2,6,10,21H,1,3-5,7-9H2,(H3,16,17,18,19)/t10-/m0/s1" A1BJL InChIKey InChI 1.06 SQOLCBZCYMVTKG-JTQLQIEISA-N A1BJL SMILES_CANONICAL CACTVS 3.385 "Nc1nc2[nH]ccc2c(n1)N3CCC4(CCC4)[C@H](CO)C3" A1BJL SMILES CACTVS 3.385 "Nc1nc2[nH]ccc2c(n1)N3CCC4(CCC4)[CH](CO)C3" A1BJL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(nc(n2)N)N3CCC4(CCC4)[C@@H](C3)CO" A1BJL SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(nc(n2)N)N3CCC4(CCC4)C(C3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJL "SYSTEMATIC NAME" ACDLabs 14.52 "[(5S)-7-(2-amino-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-7-azaspiro[3.5]nonan-5-yl]methanol" A1BJL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(9~{S})-7-(2-azanyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-7-azaspiro[3.5]nonan-9-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJL "Create component" 2024-12-09 RCSB A1BJL "Initial release" 2025-08-20 RCSB #