data_A1BJO # _chem_comp.id A1BJO _chem_comp.name "(3S)-3-[(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)amino]piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H12 F N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 313.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BJO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BJO N2 N1 N 0 1 Y N N N N N -44.085 -29.415 4.978 -0.739 -2.195 0.368 N2 A1BJO 1 A1BJO C3 C1 C 0 1 N N N N N N -44.592 -30.745 0.889 -2.937 1.313 1.245 C3 A1BJO 2 A1BJO C6 C2 C 0 1 Y N N N N N -44.234 -29.416 6.343 -0.006 -3.289 0.280 C6 A1BJO 3 A1BJO C9 C3 C 0 1 Y N N N N N -47.969 -29.166 4.465 2.178 0.198 0.077 C9 A1BJO 4 A1BJO C12 C4 C 0 1 Y N N N N N -50.814 -28.991 4.888 4.435 1.789 -0.150 C12 A1BJO 5 A1BJO C14 C5 C 0 1 Y N N N N N -48.635 -29.132 5.726 3.443 -0.395 -0.063 C14 A1BJO 6 A1BJO C1 C6 C 0 1 N N N N N N -46.071 -28.874 -0.091 -4.995 1.025 -0.101 C1 A1BJO 7 A1BJO C10 C7 C 0 1 Y N N N N N -48.868 -29.103 3.386 2.059 1.586 0.102 C10 A1BJO 8 A1BJO C11 C8 C 0 1 Y N N N N N -50.255 -29.014 3.581 3.183 2.374 -0.011 C11 A1BJO 9 A1BJO C13 C9 C 0 1 Y N N N N N -49.994 -29.051 6.010 4.568 0.415 -0.176 C13 A1BJO 10 A1BJO C15 C10 C 0 1 N N N N N N -43.845 -28.428 0.944 -3.042 -0.091 -0.792 C15 A1BJO 11 A1BJO C2 C11 C 0 1 N N N N N N -45.992 -30.340 0.402 -4.467 1.229 1.294 C2 A1BJO 12 A1BJO C4 C12 C 0 1 N N S N N N -44.081 -29.676 1.848 -2.401 0.049 0.564 C4 A1BJO 13 A1BJO C5 C13 C 0 1 Y N N N N N -45.219 -29.347 4.188 -0.177 -0.990 0.318 C5 A1BJO 14 A1BJO C7 C14 C 0 1 Y N N N N N -46.453 -29.271 6.181 1.954 -2.096 0.082 C7 A1BJO 15 A1BJO C8 C15 C 0 1 Y N N N N N -46.527 -29.259 4.770 1.213 -0.907 0.171 C8 A1BJO 16 A1BJO F1 F1 F 0 1 N N N N N N -52.120 -28.912 5.067 5.532 2.571 -0.260 F1 A1BJO 17 A1BJO N1 N2 N 0 1 N N N N N N -45.120 -29.323 2.800 -0.948 0.155 0.410 N1 A1BJO 18 A1BJO N3 N3 N 0 1 Y N N N N N -45.394 -29.351 7.010 1.302 -3.257 0.141 N3 A1BJO 19 A1BJO N4 N4 N 0 1 Y N N N N N -47.701 -29.199 6.742 3.281 -1.770 -0.057 N4 A1BJO 20 A1BJO N5 N5 N 0 1 N N N N N N -44.970 -27.985 0.187 -4.271 0.389 -1.034 N5 A1BJO 21 A1BJO O1 O1 O 0 1 N N N N N N -47.035 -28.469 -0.737 -6.096 1.444 -0.387 O1 A1BJO 22 A1BJO O2 O2 O 0 1 N N N N N N -42.772 -27.840 0.907 -2.435 -0.648 -1.681 O2 A1BJO 23 A1BJO H5 H1 H 0 1 N N N N N N -44.646 -31.713 1.408 -2.637 2.192 0.675 H5 A1BJO 24 A1BJO H4 H2 H 0 1 N N N N N N -43.911 -30.828 0.030 -2.539 1.380 2.258 H4 A1BJO 25 A1BJO H7 H3 H 0 1 N N N N N N -43.332 -29.475 6.934 -0.500 -4.249 0.324 H7 A1BJO 26 A1BJO H8 H4 H 0 1 N N N N N N -48.480 -29.124 2.378 1.086 2.044 0.209 H8 A1BJO 27 A1BJO H9 H5 H 0 1 N N N N N N -50.909 -28.962 2.723 3.091 3.450 0.008 H9 A1BJO 28 A1BJO H10 H6 H 0 1 N N N N N N -50.381 -29.036 7.018 5.545 -0.031 -0.284 H10 A1BJO 29 A1BJO H2 H7 H 0 1 N N N N N N -46.701 -30.467 1.234 -4.766 0.391 1.923 H2 A1BJO 30 A1BJO H3 H8 H 0 1 N N N N N N -46.278 -31.003 -0.428 -4.869 2.156 1.704 H3 A1BJO 31 A1BJO H1 H9 H 0 1 N N N N N N -43.147 -29.989 2.339 -2.641 -0.823 1.172 H1 A1BJO 32 A1BJO H6 H10 H 0 1 N N N N N N -45.310 -28.366 2.579 -0.527 1.028 0.372 H6 A1BJO 33 A1BJO H11 H11 H 0 1 N N N N N N -47.902 -29.196 7.722 4.003 -2.413 -0.140 H11 A1BJO 34 A1BJO H12 H12 H 0 1 N N N N N N -44.996 -27.046 -0.155 -4.651 0.271 -1.919 H12 A1BJO 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BJO O1 C1 DOUB N N 1 A1BJO C1 N5 SING N N 2 A1BJO C1 C2 SING N N 3 A1BJO N5 C15 SING N N 4 A1BJO C2 C3 SING N N 5 A1BJO C3 C4 SING N N 6 A1BJO O2 C15 DOUB N N 7 A1BJO C15 C4 SING N N 8 A1BJO C4 N1 SING N N 9 A1BJO N1 C5 SING N N 10 A1BJO C10 C11 DOUB Y N 11 A1BJO C10 C9 SING Y N 12 A1BJO C11 C12 SING Y N 13 A1BJO C5 C8 DOUB Y N 14 A1BJO C5 N2 SING Y N 15 A1BJO C9 C8 SING Y N 16 A1BJO C9 C14 DOUB Y N 17 A1BJO C8 C7 SING Y N 18 A1BJO C12 F1 SING N N 19 A1BJO C12 C13 DOUB Y N 20 A1BJO N2 C6 DOUB Y N 21 A1BJO C14 C13 SING Y N 22 A1BJO C14 N4 SING Y N 23 A1BJO C7 N4 SING Y N 24 A1BJO C7 N3 DOUB Y N 25 A1BJO C6 N3 SING Y N 26 A1BJO C3 H5 SING N N 27 A1BJO C3 H4 SING N N 28 A1BJO C6 H7 SING N N 29 A1BJO C10 H8 SING N N 30 A1BJO C11 H9 SING N N 31 A1BJO C13 H10 SING N N 32 A1BJO C2 H2 SING N N 33 A1BJO C2 H3 SING N N 34 A1BJO C4 H1 SING N N 35 A1BJO N1 H6 SING N N 36 A1BJO N4 H11 SING N N 37 A1BJO N5 H12 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BJO SMILES ACDLabs 14.52 "O=C1NC(=O)CCC1Nc1ncnc2[NH]c3cc(F)ccc3c12" A1BJO InChI InChI 1.06 "InChI=1S/C15H12FN5O2/c16-7-1-2-8-10(5-7)20-14-12(8)13(17-6-18-14)19-9-3-4-11(22)21-15(9)23/h1-2,5-6,9H,3-4H2,(H,21,22,23)(H2,17,18,19,20)/t9-/m0/s1" A1BJO InChIKey InChI 1.06 ZCLGDCWRIWCLGU-VIFPVBQESA-N A1BJO SMILES_CANONICAL CACTVS 3.385 "Fc1ccc2c([nH]c3ncnc(N[C@H]4CCC(=O)NC4=O)c23)c1" A1BJO SMILES CACTVS 3.385 "Fc1ccc2c([nH]c3ncnc(N[CH]4CCC(=O)NC4=O)c23)c1" A1BJO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N[C@H]4CCC(=O)NC4=O" A1BJO SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1F)[nH]c3c2c(ncn3)NC4CCC(=O)NC4=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BJO "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-3-[(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)amino]piperidine-2,6-dione" A1BJO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-3-[(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)amino]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BJO "Create component" 2024-12-09 RCSB A1BJO "Initial release" 2025-08-20 RCSB #