data_A1BKB # _chem_comp.id A1BKB _chem_comp.name "1-{[(7-bromo-9H-pyrimido[4,5-b]indol-4-yl)amino]methyl}cyclopropane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H14 Br N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 360.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BKB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BKB C9 C1 C 0 1 Y N N N N N -43.914 -29.299 5.915 2.137 3.803 0.097 C9 A1BKB 1 A1BKB C14 C2 C 0 1 Y N N N N N -49.678 -29.094 6.506 -3.027 0.943 0.057 C14 A1BKB 2 A1BKB C17 C3 C 0 1 Y N N N N N -50.158 -29.308 4.138 -1.995 -1.214 -0.179 C17 A1BKB 3 A1BKB C19 C4 C 0 1 Y N N N N N -47.867 -29.219 4.869 -0.625 0.750 -0.061 C19 A1BKB 4 A1BKB C11 C5 C 0 1 Y N N N N N -46.092 -29.118 6.315 -0.008 2.964 0.112 C11 A1BKB 5 A1BKB C13 C6 C 0 1 Y N N N N N -48.325 -29.107 6.196 -1.774 1.548 0.059 C13 A1BKB 6 A1BKB C15 C7 C 0 1 Y N N N N N -50.572 -29.200 5.457 -3.132 -0.427 -0.062 C15 A1BKB 7 A1BKB C18 C8 C 0 1 Y N N N N N -48.804 -29.319 3.844 -0.746 -0.633 -0.180 C18 A1BKB 8 A1BKB C2 C9 C 0 1 N N N N N N -45.121 -32.205 1.355 3.712 -2.211 0.795 C2 A1BKB 9 A1BKB C20 C10 C 0 1 Y N N N N N -46.415 -29.227 4.938 0.521 1.672 -0.027 C20 A1BKB 10 A1BKB C21 C11 C 0 1 N N N N N N -42.840 -31.767 2.445 5.684 -1.748 -0.830 C21 A1BKB 11 A1BKB C22 C12 C 0 1 N N N N N N -42.680 -31.522 0.968 4.448 -2.025 -1.688 C22 A1BKB 12 A1BKB C4 C13 C 0 1 N N N N N N -43.995 -31.214 1.644 4.294 -1.371 -0.313 C4 A1BKB 13 A1BKB C5 C14 C 0 1 N N N N N N -44.340 -29.742 1.851 3.933 0.115 -0.273 C5 A1BKB 14 A1BKB C7 C15 C 0 1 Y N N N N N -45.297 -29.389 4.081 1.910 1.518 -0.110 C7 A1BKB 15 A1BKB N1 N1 N 0 1 N N N N N N -46.256 -31.715 0.879 3.661 -1.727 2.052 N1 A1BKB 16 A1BKB N10 N2 N 0 1 Y N N N N N -44.861 -29.144 6.844 0.837 3.993 0.169 N10 A1BKB 17 A1BKB N12 N3 N 0 1 Y N N N N N -47.239 -29.046 7.052 -1.377 2.870 0.161 N12 A1BKB 18 A1BKB N6 N4 N 0 1 N N N N N N -45.450 -29.518 2.752 2.476 0.263 -0.253 N6 A1BKB 19 A1BKB N8 N5 N 0 1 Y N N N N N -44.053 -29.420 4.591 2.674 2.605 -0.039 N8 A1BKB 20 A1BKB O3 O1 O 0 1 N N N N N N -44.962 -33.407 1.559 3.290 -3.322 0.556 O3 A1BKB 21 A1BKB BR16 BR1 BR 0 0 N N N N N N -52.431 -29.267 5.845 -4.840 -1.240 -0.065 BR16 A1BKB 22 A1BKB H9 H1 H 0 1 N N N N N N -42.899 -29.331 6.283 2.791 4.661 0.147 H9 A1BKB 23 A1BKB H14 H2 H 0 1 N N N N N N -50.019 -29.005 7.527 -3.917 1.546 0.150 H14 A1BKB 24 A1BKB H17 H3 H 0 1 N N N N N N -50.887 -29.383 3.344 -2.090 -2.286 -0.272 H17 A1BKB 25 A1BKB H18 H4 H 0 1 N N N N N N -48.475 -29.405 2.819 0.137 -1.247 -0.272 H18 A1BKB 26 A1BKB H21B H5 H 0 0 N N N N N N -42.881 -32.797 2.830 6.178 -2.603 -0.368 H21B A1BKB 27 A1BKB H21A H6 H 0 0 N N N N N N -42.316 -31.125 3.169 6.342 -0.937 -1.141 H21A A1BKB 28 A1BKB H22B H7 H 0 0 N N N N N N -42.604 -32.373 0.275 4.293 -1.396 -2.565 H22B A1BKB 29 A1BKB H22A H8 H 0 0 N N N N N N -42.039 -30.702 0.613 4.129 -3.062 -1.791 H22A A1BKB 30 A1BKB H5B H9 H 0 1 N N N N N N -43.455 -29.234 2.260 4.357 0.568 0.623 H5B A1BKB 31 A1BKB H5A H10 H 0 1 N N N N N N -44.594 -29.306 0.874 4.336 0.610 -1.157 H5A A1BKB 32 A1BKB H1B H11 H 0 1 N N N N N N -47.018 -32.329 0.674 3.354 -2.292 2.778 H1B A1BKB 33 A1BKB H1A H12 H 0 1 N N N N N N -46.350 -30.731 0.725 3.932 -0.813 2.231 H1A A1BKB 34 A1BKB H12 H13 H 0 1 N N N N N N -47.287 -28.963 8.047 -1.981 3.624 0.255 H12 A1BKB 35 A1BKB H6 H14 H 0 1 N N N N N N -45.891 -28.676 2.442 1.907 -0.518 -0.339 H6 A1BKB 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BKB N1 C2 SING N N 1 A1BKB C22 C4 SING N N 2 A1BKB C22 C21 SING N N 3 A1BKB C2 O3 DOUB N N 4 A1BKB C2 C4 SING N N 5 A1BKB C4 C5 SING N N 6 A1BKB C4 C21 SING N N 7 A1BKB C5 N6 SING N N 8 A1BKB N6 C7 SING N N 9 A1BKB C18 C17 DOUB Y N 10 A1BKB C18 C19 SING Y N 11 A1BKB C7 N8 DOUB Y N 12 A1BKB C7 C20 SING Y N 13 A1BKB C17 C15 SING Y N 14 A1BKB N8 C9 SING Y N 15 A1BKB C19 C20 SING Y N 16 A1BKB C19 C13 DOUB Y N 17 A1BKB C20 C11 DOUB Y N 18 A1BKB C15 BR16 SING N N 19 A1BKB C15 C14 DOUB Y N 20 A1BKB C9 N10 DOUB Y N 21 A1BKB C13 C14 SING Y N 22 A1BKB C13 N12 SING Y N 23 A1BKB C11 N10 SING Y N 24 A1BKB C11 N12 SING Y N 25 A1BKB C9 H9 SING N N 26 A1BKB C14 H14 SING N N 27 A1BKB C17 H17 SING N N 28 A1BKB C18 H18 SING N N 29 A1BKB C21 H21B SING N N 30 A1BKB C21 H21A SING N N 31 A1BKB C22 H22B SING N N 32 A1BKB C22 H22A SING N N 33 A1BKB C5 H5B SING N N 34 A1BKB C5 H5A SING N N 35 A1BKB N1 H1B SING N N 36 A1BKB N1 H1A SING N N 37 A1BKB N12 H12 SING N N 38 A1BKB N6 H6 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BKB SMILES ACDLabs 14.52 "NC(=O)C1(CC1)CNc1ncnc2[NH]c3cc(Br)ccc3c12" A1BKB InChI InChI 1.06 "InChI=1S/C15H14BrN5O/c16-8-1-2-9-10(5-8)21-13-11(9)12(19-7-20-13)18-6-15(3-4-15)14(17)22/h1-2,5,7H,3-4,6H2,(H2,17,22)(H2,18,19,20,21)" A1BKB InChIKey InChI 1.06 YLNJPEGUTGFJHW-UHFFFAOYSA-N A1BKB SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1(CC1)CNc2ncnc3[nH]c4cc(Br)ccc4c23" A1BKB SMILES CACTVS 3.385 "NC(=O)C1(CC1)CNc2ncnc3[nH]c4cc(Br)ccc4c23" A1BKB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1Br)[nH]c3c2c(ncn3)NCC4(CC4)C(=O)N" A1BKB SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1Br)[nH]c3c2c(ncn3)NCC4(CC4)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BKB "SYSTEMATIC NAME" ACDLabs 14.52 "1-{[(7-bromo-9H-pyrimido[4,5-b]indol-4-yl)amino]methyl}cyclopropane-1-carboxamide" A1BKB "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[[(7-bromanyl-9~{H}-pyrimido[4,5-b]indol-4-yl)amino]methyl]cyclopropane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BKB "Create component" 2024-12-09 RCSB A1BKB "Initial release" 2025-08-20 RCSB #