data_A1BKC # _chem_comp.id A1BKC _chem_comp.name "(1S,6R)-10-(6-chloro-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-3,10-diazabicyclo[4.3.1]decan-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 Cl N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.763 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BKC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BKC C6 C1 C 0 1 N N N N N N -46.312 -29.060 0.940 1.849 2.318 0.555 C6 A1BKC 1 A1BKC C9 C2 C 0 1 N N R N N N -43.761 -29.701 2.271 2.157 -0.500 1.183 C9 A1BKC 2 A1BKC C17 C3 C 0 1 Y N N N N N -47.871 -29.556 4.719 -2.165 0.796 0.340 C17 A1BKC 3 A1BKC C11 C4 C 0 1 Y N N N N N -45.209 -29.574 4.280 -0.088 -0.829 0.585 C11 A1BKC 4 A1BKC C13 C5 C 0 1 Y N N N N N -44.104 -29.370 6.266 -0.628 -3.003 0.033 C13 A1BKC 5 A1BKC C15 C6 C 0 1 Y N N N N N -46.328 -29.358 6.360 -2.315 -1.447 -0.121 C15 A1BKC 6 A1BKC C16 C7 C 0 1 Y N N N N N -46.458 -29.499 4.973 -1.411 -0.456 0.305 C16 A1BKC 7 A1BKC C18 C8 C 0 1 Y N N N N N -48.501 -29.450 5.921 -3.419 0.506 -0.047 C18 A1BKC 8 A1BKC C2 C9 C 0 1 N N N N N N -44.050 -32.188 2.643 3.259 -0.165 -1.007 C2 A1BKC 9 A1BKC C21 C10 C 0 1 N N N N N N -43.293 -31.106 1.916 2.600 -1.189 -0.110 C21 A1BKC 10 A1BKC C4 C11 C 0 1 N N N N N N -46.181 -31.500 1.547 1.069 0.850 -1.324 C4 A1BKC 11 A1BKC C5 C12 C 0 1 N N S N N N -46.248 -30.075 2.067 0.826 1.276 0.125 C5 A1BKC 12 A1BKC C7 C13 C 0 1 N N N N N N -44.993 -29.047 0.176 3.239 1.678 0.618 C7 A1BKC 13 A1BKC C8 C14 C 0 1 N N N N N N -43.805 -28.742 1.086 3.195 0.524 1.624 C8 A1BKC 14 A1BKC N10 N1 N 0 1 N N N N N N -45.087 -29.745 2.915 0.838 0.108 1.007 N10 A1BKC 15 A1BKC N12 N2 N 0 1 Y N N N N N -44.041 -29.506 4.941 0.254 -2.105 0.436 N12 A1BKC 16 A1BKC N14 N3 N 0 1 Y N N N N N -45.181 -29.287 7.046 -1.878 -2.699 -0.241 N14 A1BKC 17 A1BKC N20 N4 N 0 1 Y N N N N N -47.579 -29.329 6.912 -3.521 -0.833 -0.325 N20 A1BKC 18 A1BKC N3 N5 N 0 1 N N N N N N -45.326 -32.391 2.318 2.516 0.798 -1.572 N3 A1BKC 19 A1BKC O1 O1 O 0 1 N N N N N N -43.508 -32.863 3.514 4.452 -0.215 -1.214 O1 A1BKC 20 A1BKC CL19 CL1 CL 0 0 N N N N N N -50.188 -29.445 6.264 -4.715 1.654 -0.174 CL19 A1BKC 21 A1BKC H6B H1 H 0 1 N N N N N N -46.500 -28.061 1.360 1.859 3.136 -0.165 H6B A1BKC 22 A1BKC H6A H2 H 0 1 N N N N N N -47.128 -29.329 0.253 1.583 2.704 1.539 H6A A1BKC 23 A1BKC H9 H3 H 0 1 N N N N N N -43.045 -29.291 2.998 2.083 -1.256 1.965 H9 A1BKC 24 A1BKC H17 H4 H 0 1 N N N N N N -48.345 -29.663 3.754 -1.787 1.766 0.627 H17 A1BKC 25 A1BKC H13 H5 H 0 1 N N N N N N -43.153 -29.320 6.776 -0.308 -4.029 -0.075 H13 A1BKC 26 A1BKC H21B H6 H 0 0 N N N N N N -43.424 -31.255 0.834 3.311 -1.981 0.124 H21B A1BKC 27 A1BKC H21A H7 H 0 0 N N N N N N -42.227 -31.194 2.172 1.732 -1.612 -0.614 H21A A1BKC 28 A1BKC H4B H8 H 0 1 N N N N N N -47.200 -31.914 1.552 0.634 -0.135 -1.493 H4B A1BKC 29 A1BKC H4A H9 H 0 1 N N N N N N -45.802 -31.470 0.515 0.609 1.573 -1.998 H4A A1BKC 30 A1BKC H5 H10 H 0 1 N N N N N N -47.163 -29.974 2.669 -0.165 1.726 0.186 H5 A1BKC 31 A1BKC H7B H11 H 0 1 N N N N N N -44.841 -30.033 -0.287 3.512 1.296 -0.366 H7B A1BKC 32 A1BKC H7A H12 H 0 1 N N N N N N -45.045 -28.278 -0.609 3.971 2.418 0.940 H7A A1BKC 33 A1BKC H8A H13 H 0 1 N N N N N N -42.875 -28.842 0.508 2.928 0.910 2.608 H8A A1BKC 34 A1BKC H8B H14 H 0 1 N N N N N N -43.895 -27.712 1.461 4.175 0.049 1.675 H8B A1BKC 35 A1BKC H20 H15 H 0 1 N N N N N N -47.782 -29.234 7.887 -4.329 -1.279 -0.624 H20 A1BKC 36 A1BKC H3 H16 H 0 1 N N N N N N -45.739 -33.244 2.637 2.935 1.460 -2.145 H3 A1BKC 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BKC C7 C6 SING N N 1 A1BKC C7 C8 SING N N 2 A1BKC C6 C5 SING N N 3 A1BKC C8 C9 SING N N 4 A1BKC C4 C5 SING N N 5 A1BKC C4 N3 SING N N 6 A1BKC C21 C9 SING N N 7 A1BKC C21 C2 SING N N 8 A1BKC C5 N10 SING N N 9 A1BKC C9 N10 SING N N 10 A1BKC N3 C2 SING N N 11 A1BKC C2 O1 DOUB N N 12 A1BKC N10 C11 SING N N 13 A1BKC C11 N12 DOUB Y N 14 A1BKC C11 C16 SING Y N 15 A1BKC C17 C16 SING Y N 16 A1BKC C17 C18 DOUB Y N 17 A1BKC N12 C13 SING Y N 18 A1BKC C16 C15 DOUB Y N 19 A1BKC C18 CL19 SING N N 20 A1BKC C18 N20 SING Y N 21 A1BKC C13 N14 DOUB Y N 22 A1BKC C15 N20 SING Y N 23 A1BKC C15 N14 SING Y N 24 A1BKC C6 H6B SING N N 25 A1BKC C6 H6A SING N N 26 A1BKC C9 H9 SING N N 27 A1BKC C17 H17 SING N N 28 A1BKC C13 H13 SING N N 29 A1BKC C21 H21B SING N N 30 A1BKC C21 H21A SING N N 31 A1BKC C4 H4B SING N N 32 A1BKC C4 H4A SING N N 33 A1BKC C5 H5 SING N N 34 A1BKC C7 H7B SING N N 35 A1BKC C7 H7A SING N N 36 A1BKC C8 H8A SING N N 37 A1BKC C8 H8B SING N N 38 A1BKC N20 H20 SING N N 39 A1BKC N3 H3 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BKC SMILES ACDLabs 14.52 "Clc1cc2c([NH]1)ncnc2N1C2CCCC1CNC(=O)C2" A1BKC InChI InChI 1.06 "InChI=1S/C14H16ClN5O/c15-11-5-10-13(19-11)17-7-18-14(10)20-8-2-1-3-9(20)6-16-12(21)4-8/h5,7-9H,1-4,6H2,(H,16,21)(H,17,18,19)/t8-,9+/m1/s1" A1BKC InChIKey InChI 1.06 YQNFICZZYFQQBS-BDAKNGLRSA-N A1BKC SMILES_CANONICAL CACTVS 3.385 "Clc1[nH]c2ncnc(N3[C@H]4CCC[C@@H]3CC(=O)NC4)c2c1" A1BKC SMILES CACTVS 3.385 "Clc1[nH]c2ncnc(N3[CH]4CCC[CH]3CC(=O)NC4)c2c1" A1BKC SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c2c([nH]c1Cl)ncnc2N3[C@@H]4CCC[C@H]3CNC(=O)C4" A1BKC SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c2c([nH]c1Cl)ncnc2N3C4CCCC3CNC(=O)C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BKC "SYSTEMATIC NAME" ACDLabs 14.52 "(1S,6R)-10-(6-chloro-7H-pyrrolo[2,3-d]pyrimidin-4-yl)-3,10-diazabicyclo[4.3.1]decan-4-one" A1BKC "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{S},6~{R})-10-(6-chloranyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-3,10-diazabicyclo[4.3.1]decan-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BKC "Create component" 2024-12-09 RCSB A1BKC "Initial release" 2025-08-20 RCSB #