data_A1BKD # _chem_comp.id A1BKD _chem_comp.name "4-[(2,4,6-trifluorophenyl)sulfanyl]-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H5 F3 N4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.266 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BKD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BKD N2 N1 N 0 1 Y N N N N N -48.194 -28.890 7.145 4.364 -1.339 0.014 N2 A1BKD 1 A1BKD C3 C1 C 0 1 Y N N N N N -49.283 -28.743 6.304 4.611 -0.002 0.006 C3 A1BKD 2 A1BKD C6 C2 C 0 1 Y N N N N N -46.372 -29.175 4.084 0.965 -0.302 0.001 C6 A1BKD 3 A1BKD C9 C3 C 0 1 Y N N N N N -42.776 -29.266 0.979 -3.521 -0.069 -1.200 C9 A1BKD 4 A1BKD C12 C4 C 0 1 Y N N N N N -45.034 -30.938 0.946 -2.221 0.412 1.201 C12 A1BKD 5 A1BKD C1 C5 C 0 1 N N N N N N -49.724 -28.681 3.817 3.261 2.103 -0.012 C1 A1BKD 6 A1BKD C10 C6 C 0 1 Y N N N N N -42.718 -30.540 0.386 -4.174 -0.290 0.000 C10 A1BKD 7 A1BKD C11 C7 C 0 1 Y N N N N N -43.833 -31.392 0.359 -3.525 -0.050 1.200 C11 A1BKD 8 A1BKD C13 C8 C 0 1 Y N N N N N -47.441 -29.016 4.994 2.366 -0.333 0.001 C13 A1BKD 9 A1BKD C2 C9 C 0 1 Y N N N N N -48.881 -28.800 4.968 3.431 0.681 -0.002 C2 A1BKD 10 A1BKD C4 C10 C 0 1 Y N N N N N -47.051 -29.068 6.366 3.014 -1.579 0.005 C4 A1BKD 11 A1BKD C5 C11 C 0 1 Y N N N N N -44.838 -29.396 5.829 0.956 -2.609 0.010 C5 A1BKD 12 A1BKD C7 C12 C 0 1 Y N N N N N -45.146 -29.666 1.542 -1.564 0.641 -0.003 C7 A1BKD 13 A1BKD C8 C13 C 0 1 Y N N N N N -43.989 -28.854 1.555 -2.217 0.394 -1.205 C8 A1BKD 14 A1BKD F1 F1 F 0 1 N N N N N N -44.041 -27.637 2.115 -1.579 0.604 -2.377 F1 A1BKD 15 A1BKD F2 F2 F 0 1 N N N N N N -41.584 -30.940 -0.153 -5.447 -0.742 0.002 F2 A1BKD 16 A1BKD F3 F3 F 0 1 N N N N N N -46.099 -31.739 0.922 -1.590 0.652 2.372 F3 A1BKD 17 A1BKD N1 N2 N 0 1 N N N N N N -50.399 -28.587 2.878 3.127 3.231 -0.020 N1 A1BKD 18 A1BKD N3 N3 N 0 1 Y N N N N N -45.761 -29.265 6.801 2.270 -2.684 0.010 N3 A1BKD 19 A1BKD N4 N4 N 0 1 Y N N N N N -45.097 -29.369 4.473 0.307 -1.459 0.006 N4 A1BKD 20 A1BKD S1 S1 S 0 1 N N N N N N -46.655 -29.122 2.299 0.096 1.231 -0.005 S1 A1BKD 21 A1BKD H2 H1 H 0 1 N N N N N N -48.222 -28.872 8.144 5.047 -2.028 0.020 H2 A1BKD 22 A1BKD H1 H2 H 0 1 N N N N N N -50.302 -28.604 6.635 5.591 0.451 0.006 H1 A1BKD 23 A1BKD H4 H3 H 0 1 N N N N N N -41.910 -28.621 0.991 -4.028 -0.261 -2.134 H4 A1BKD 24 A1BKD H5 H4 H 0 1 N N N N N N -43.774 -32.369 -0.098 -4.037 -0.223 2.135 H5 A1BKD 25 A1BKD H3 H5 H 0 1 N N N N N N -43.811 -29.533 6.135 0.385 -3.526 0.013 H3 A1BKD 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BKD F2 C10 SING N N 1 A1BKD C11 C10 DOUB Y N 2 A1BKD C11 C12 SING Y N 3 A1BKD C10 C9 SING Y N 4 A1BKD F3 C12 SING N N 5 A1BKD C12 C7 DOUB Y N 6 A1BKD C9 C8 DOUB Y N 7 A1BKD C7 C8 SING Y N 8 A1BKD C7 S1 SING N N 9 A1BKD C8 F1 SING N N 10 A1BKD S1 C6 SING N N 11 A1BKD N1 C1 TRIP N N 12 A1BKD C1 C2 SING N N 13 A1BKD C6 N4 DOUB Y N 14 A1BKD C6 C13 SING Y N 15 A1BKD N4 C5 SING Y N 16 A1BKD C2 C13 SING Y N 17 A1BKD C2 C3 DOUB Y N 18 A1BKD C13 C4 DOUB Y N 19 A1BKD C5 N3 DOUB Y N 20 A1BKD C3 N2 SING Y N 21 A1BKD C4 N3 SING Y N 22 A1BKD C4 N2 SING Y N 23 A1BKD N2 H2 SING N N 24 A1BKD C3 H1 SING N N 25 A1BKD C9 H4 SING N N 26 A1BKD C11 H5 SING N N 27 A1BKD C5 H3 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BKD SMILES ACDLabs 14.52 "Fc1cc(F)cc(F)c1Sc1ncnc2[NH]cc(C#N)c21" A1BKD InChI InChI 1.06 "InChI=1S/C13H5F3N4S/c14-7-1-8(15)11(9(16)2-7)21-13-10-6(3-17)4-18-12(10)19-5-20-13/h1-2,4-5H,(H,18,19,20)" A1BKD InChIKey InChI 1.06 TTYZGNACOPHKDR-UHFFFAOYSA-N A1BKD SMILES_CANONICAL CACTVS 3.385 "Fc1cc(F)c(Sc2ncnc3[nH]cc(C#N)c23)c(F)c1" A1BKD SMILES CACTVS 3.385 "Fc1cc(F)c(Sc2ncnc3[nH]cc(C#N)c23)c(F)c1" A1BKD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c(cc(c(c1F)Sc2c3c(c[nH]c3ncn2)C#N)F)F" A1BKD SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c(cc(c(c1F)Sc2c3c(c[nH]c3ncn2)C#N)F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BKD "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(2,4,6-trifluorophenyl)sulfanyl]-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" A1BKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[2,4,6-tris(fluoranyl)phenyl]sulfanyl-7~{H}-pyrrolo[2,3-d]pyrimidine-5-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BKD "Create component" 2024-12-09 RCSB A1BKD "Initial release" 2025-08-20 RCSB #