data_A1BKI # _chem_comp.id A1BKI _chem_comp.name "3-{(3R)-3-[(5-bromo-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]butyl}-1,3-oxazolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 Br N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.202 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BKI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HQ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BKI C6 C1 C 0 1 Y N N N N N -47.666 -29.189 4.614 2.566 1.130 0.154 C6 A1BKI 1 A1BKI N11 N1 N 0 1 Y N N N N N -45.139 -29.381 7.102 3.997 -2.022 0.962 N11 A1BKI 2 A1BKI C12 C2 C 0 1 Y N N N N N -44.041 -29.549 6.359 3.088 -2.917 0.643 C12 A1BKI 3 A1BKI C14 C3 C 0 1 N N N N N N -43.979 -30.280 0.834 -2.022 -1.452 -0.917 C14 A1BKI 4 A1BKI C17 C4 C 0 1 N N N N N N -46.535 -32.238 0.909 -4.951 -1.234 0.785 C17 A1BKI 5 A1BKI C1 C5 C 0 1 N N N N N N -43.115 -28.290 2.097 -0.312 -2.575 -2.352 C1 A1BKI 6 A1BKI C10 C6 C 0 1 Y N N N N N -46.250 -29.292 6.358 3.767 -0.723 0.778 C10 A1BKI 7 A1BKI C15 C7 C 0 1 N N N N N N -43.985 -31.801 0.806 -2.363 -1.025 0.512 C15 A1BKI 8 A1BKI C18 C8 C 0 1 N N N N N N -47.370 -32.714 2.079 -6.063 -0.170 0.711 C18 A1BKI 9 A1BKI C2 C9 C 0 1 N N R N N N -43.737 -29.674 2.214 -0.607 -2.033 -0.952 C2 A1BKI 10 A1BKI C20 C10 C 0 1 N N N N N N -45.172 -32.791 2.728 -4.036 0.820 0.361 C20 A1BKI 11 A1BKI C4 C11 C 0 1 Y N N N N N -45.066 -29.542 4.311 1.591 -1.320 -0.087 C4 A1BKI 12 A1BKI C5 C12 C 0 1 Y N N N N N -46.295 -29.369 4.974 2.530 -0.329 0.237 C5 A1BKI 13 A1BKI C8 C13 C 0 1 Y N N N N N -48.391 -29.013 5.770 3.763 1.516 0.625 C8 A1BKI 14 A1BKI N13 N2 N 0 1 Y N N N N N -43.931 -29.638 5.029 1.913 -2.592 0.133 N13 A1BKI 15 A1BKI N16 N3 N 0 1 N N N N N N -45.187 -32.288 1.484 -3.718 -0.469 0.545 N16 A1BKI 16 A1BKI N3 N4 N 0 1 N N N N N N -44.992 -29.603 2.964 0.360 -0.983 -0.621 N3 A1BKI 17 A1BKI N9 N5 N 0 1 Y N N N N N -47.515 -29.078 6.838 4.491 0.415 1.002 N9 A1BKI 18 A1BKI O19 O1 O 0 1 N N N N N N -46.425 -33.110 3.106 -5.348 1.070 0.440 O19 A1BKI 19 A1BKI O21 O2 O 0 1 N N N N N N -44.221 -32.945 3.457 -3.209 1.683 0.142 O21 A1BKI 20 A1BKI BR7 BR1 BR 0 0 N N N N N N -48.391 -29.189 2.878 1.195 2.256 -0.500 BR7 A1BKI 21 A1BKI H12 H1 H 0 1 N N N N N N -43.114 -29.623 6.909 3.309 -3.962 0.806 H12 A1BKI 22 A1BKI H14B H2 H 0 0 N N N N N N -43.185 -29.927 0.160 -2.733 -2.209 -1.249 H14B A1BKI 23 A1BKI H14A H3 H 0 0 N N N N N N -44.954 -29.926 0.469 -2.076 -0.587 -1.578 H14A A1BKI 24 A1BKI H17A H4 H 0 0 N N N N N N -46.808 -31.216 0.608 -4.928 -1.696 1.772 H17A A1BKI 25 A1BKI H17B H5 H 0 0 N N N N N N -46.630 -32.912 0.045 -5.090 -1.988 0.011 H17B A1BKI 26 A1BKI H1B H6 H 0 1 N N N N N N -42.951 -27.875 3.102 -0.391 -1.766 -3.078 H1B A1BKI 27 A1BKI H1A H7 H 0 1 N N N N N N -42.153 -28.364 1.569 0.696 -2.988 -2.377 H1A A1BKI 28 A1BKI H1C H8 H 0 1 N N N N N N -43.792 -27.630 1.534 -1.031 -3.356 -2.598 H1C A1BKI 29 A1BKI H15B H9 H 0 0 N N N N N N -43.984 -32.150 -0.237 -2.309 -1.890 1.173 H15B A1BKI 30 A1BKI H15A H10 H 0 0 N N N N N N -43.091 -32.182 1.322 -1.652 -0.268 0.844 H15A A1BKI 31 A1BKI H18A H11 H 0 0 N N N N N N -48.015 -31.901 2.445 -6.756 -0.397 -0.099 H18A A1BKI 32 A1BKI H18B H12 H 0 0 N N N N N N -47.993 -33.570 1.781 -6.594 -0.105 1.661 H18B A1BKI 33 A1BKI H2 H13 H 0 1 N N N N N N -43.033 -30.323 2.755 -0.528 -2.842 -0.225 H2 A1BKI 34 A1BKI H8 H14 H 0 1 N N N N N N -49.457 -28.852 5.832 4.102 2.539 0.697 H8 A1BKI 35 A1BKI H3 H15 H 0 1 N N N N N N -45.461 -28.786 2.630 0.137 -0.052 -0.775 H3 A1BKI 36 A1BKI H9 H16 H 0 1 N N N N N N -47.764 -28.984 7.802 5.387 0.441 1.373 H9 A1BKI 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BKI C15 C14 SING N N 1 A1BKI C15 N16 SING N N 2 A1BKI C14 C2 SING N N 3 A1BKI C17 N16 SING N N 4 A1BKI C17 C18 SING N N 5 A1BKI N16 C20 SING N N 6 A1BKI C18 O19 SING N N 7 A1BKI C1 C2 SING N N 8 A1BKI C2 N3 SING N N 9 A1BKI C20 O19 SING N N 10 A1BKI C20 O21 DOUB N N 11 A1BKI BR7 C6 SING N N 12 A1BKI N3 C4 SING N N 13 A1BKI C4 C5 DOUB Y N 14 A1BKI C4 N13 SING Y N 15 A1BKI C6 C5 SING Y N 16 A1BKI C6 C8 DOUB Y N 17 A1BKI C5 C10 SING Y N 18 A1BKI N13 C12 DOUB Y N 19 A1BKI C8 N9 SING Y N 20 A1BKI C10 N9 SING Y N 21 A1BKI C10 N11 DOUB Y N 22 A1BKI C12 N11 SING Y N 23 A1BKI C12 H12 SING N N 24 A1BKI C14 H14B SING N N 25 A1BKI C14 H14A SING N N 26 A1BKI C17 H17A SING N N 27 A1BKI C17 H17B SING N N 28 A1BKI C1 H1B SING N N 29 A1BKI C1 H1A SING N N 30 A1BKI C1 H1C SING N N 31 A1BKI C15 H15B SING N N 32 A1BKI C15 H15A SING N N 33 A1BKI C18 H18A SING N N 34 A1BKI C18 H18B SING N N 35 A1BKI C2 H2 SING N N 36 A1BKI C8 H8 SING N N 37 A1BKI N3 H3 SING N N 38 A1BKI N9 H9 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BKI SMILES ACDLabs 14.52 "Brc1c[NH]c2ncnc(NC(C)CCN3CCOC3=O)c12" A1BKI InChI InChI 1.06 "InChI=1S/C13H16BrN5O2/c1-8(2-3-19-4-5-21-13(19)20)18-12-10-9(14)6-15-11(10)16-7-17-12/h6-8H,2-5H2,1H3,(H2,15,16,17,18)/t8-/m1/s1" A1BKI InChIKey InChI 1.06 AFIGFQHYOWWULG-MRVPVSSYSA-N A1BKI SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCN1CCOC1=O)Nc2ncnc3[nH]cc(Br)c23" A1BKI SMILES CACTVS 3.385 "C[CH](CCN1CCOC1=O)Nc2ncnc3[nH]cc(Br)c23" A1BKI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](CCN1CCOC1=O)Nc2c3c(c[nH]c3ncn2)Br" A1BKI SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(CCN1CCOC1=O)Nc2c3c(c[nH]c3ncn2)Br" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BKI "SYSTEMATIC NAME" ACDLabs 14.52 "3-{(3R)-3-[(5-bromo-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]butyl}-1,3-oxazolidin-2-one" A1BKI "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[(3~{R})-3-[(5-bromanyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)amino]butyl]-1,3-oxazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BKI "Create component" 2024-12-09 RCSB A1BKI "Initial release" 2025-08-20 RCSB #