data_A1BKN # _chem_comp.id A1BKN _chem_comp.name "6-cyclopropyl-N-{[(3S)-3-hydroxy-1-(1H-pyrrolo[2,3-b]pyridine-5-carbonyl)pyrrolidin-3-yl]methyl}pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-09 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BKN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HPZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BKN N2 N1 N 0 1 N N N N N N -43.394 -28.675 2.375 -1.743 0.326 -0.438 N2 A1BKN 1 A1BKN C3 C1 C 0 1 N N S N N N -42.899 -27.908 0.160 0.038 1.705 0.379 C3 A1BKN 2 A1BKN C6 C2 C 0 1 N N N N N N -43.798 -29.579 3.366 -2.412 -0.819 -0.677 C6 A1BKN 3 A1BKN C9 C3 C 0 1 Y N N N N N -46.651 -28.947 6.409 -6.560 -1.139 0.033 C9 A1BKN 4 A1BKN C12 C4 C 0 1 Y N N N N N -47.107 -28.946 5.059 -5.952 0.128 0.142 C12 A1BKN 5 A1BKN C14 C5 C 0 1 N N N N N N -42.403 -28.857 1.314 -0.284 0.508 -0.550 C14 A1BKN 6 A1BKN C17 C6 C 0 1 Y N N N N N -45.612 -34.703 -0.471 7.173 0.477 -0.383 C17 A1BKN 7 A1BKN C19 C7 C 0 1 Y N N N N N -44.198 -34.022 -2.281 5.609 -1.161 0.389 C19 A1BKN 8 A1BKN C1 C8 C 0 1 N N N N N N -44.820 -30.968 -0.265 3.695 1.883 -0.272 C1 A1BKN 9 A1BKN C10 C9 C 0 1 Y N N N N N -48.884 -28.588 6.425 -8.152 0.347 0.586 C10 A1BKN 10 A1BKN C11 C10 C 0 1 Y N N N N N -48.522 -28.712 5.098 -7.020 1.064 0.502 C11 A1BKN 11 A1BKN C13 C11 C 0 1 Y N N N N N -46.162 -29.152 4.049 -4.584 0.257 -0.088 C13 A1BKN 12 A1BKN C15 C12 C 0 1 Y N N N N N -44.872 -32.430 -0.702 4.835 0.944 -0.154 C15 A1BKN 13 A1BKN C16 C13 C 0 1 Y N N N N N -45.604 -33.391 0.002 6.116 1.367 -0.498 C16 A1BKN 14 A1BKN C18 C14 C 0 1 Y N N N N N -44.911 -35.042 -1.620 6.910 -0.806 0.069 C18 A1BKN 15 A1BKN C2 C15 C 0 1 N N N N N N -44.093 -28.560 -0.647 1.325 2.408 -0.057 C2 A1BKN 16 A1BKN C20 C16 C 0 1 N N N N N N -43.426 -34.302 -3.522 5.316 -2.557 0.874 C20 A1BKN 17 A1BKN C21 C17 C 0 1 N N N N N N -44.078 -34.336 -4.871 5.098 -3.641 -0.183 C21 A1BKN 18 A1BKN C22 C18 C 0 1 N N N N N N -43.001 -33.291 -4.538 6.387 -3.624 0.642 C22 A1BKN 19 A1BKN C4 C19 C 0 1 N N N N N N -43.341 -26.700 0.999 -1.198 2.617 0.151 C4 A1BKN 20 A1BKN C5 C20 C 0 1 N N N N N N -43.987 -27.309 2.259 -2.347 1.602 -0.029 C5 A1BKN 21 A1BKN C7 C21 C 0 1 Y N N N N N -44.838 -29.342 4.409 -3.865 -0.893 -0.421 C7 A1BKN 22 A1BKN C8 C22 C 0 1 Y N N N N N -44.487 -29.330 5.784 -4.540 -2.116 -0.510 C8 A1BKN 23 A1BKN N1 N2 N 0 1 N N N N N N -44.147 -29.987 -1.025 2.453 1.480 0.060 N1 A1BKN 24 A1BKN N3 N3 N 0 1 Y N N N N N -45.344 -29.139 6.797 -5.831 -2.203 -0.287 N3 A1BKN 25 A1BKN N4 N4 N 0 1 Y N N N N N -47.746 -28.725 7.232 -7.892 -0.969 0.313 N4 A1BKN 26 A1BKN N5 N5 N 0 1 Y N N N N N -44.183 -32.731 -1.836 4.625 -0.296 0.270 N5 A1BKN 27 A1BKN O1 O1 O 0 1 N N N N N N -45.404 -30.671 0.767 3.880 3.017 -0.668 O1 A1BKN 28 A1BKN O2 O2 O 0 1 N N N N N N -41.887 -27.602 -0.739 0.122 1.287 1.743 O2 A1BKN 29 A1BKN O3 O3 O 0 1 N N N N N N -43.255 -30.677 3.367 -1.820 -1.792 -1.103 O3 A1BKN 30 A1BKN H15 H1 H 0 1 N N N N N N -42.380 -29.904 0.976 0.237 -0.387 -0.210 H15 A1BKN 31 A1BKN H14 H2 H 0 1 N N N N N N -41.402 -28.561 1.660 -0.009 0.741 -1.578 H14 A1BKN 32 A1BKN H17 H3 H 0 1 N N N N N N -46.168 -35.461 0.061 8.178 0.776 -0.642 H17 A1BKN 33 A1BKN H11 H4 H 0 1 N N N N N N -49.887 -28.413 6.785 -9.122 0.749 0.837 H11 A1BKN 34 A1BKN H12 H5 H 0 1 N N N N N N -49.183 -28.645 4.246 -6.917 2.126 0.669 H12 A1BKN 35 A1BKN H13 H6 H 0 1 N N N N N N -46.458 -29.163 3.010 -4.095 1.217 -0.011 H13 A1BKN 36 A1BKN H16 H7 H 0 1 N N N N N N -46.152 -33.123 0.893 6.285 2.374 -0.850 H16 A1BKN 37 A1BKN H18 H8 H 0 1 N N N N N N -44.912 -36.055 -1.995 7.711 -1.524 0.170 H18 A1BKN 38 A1BKN H2 H9 H 0 1 N N N N N N -44.159 -27.998 -1.590 1.229 2.734 -1.093 H2 A1BKN 39 A1BKN H3 H10 H 0 1 N N N N N N -44.996 -28.375 -0.047 1.500 3.274 0.581 H3 A1BKN 40 A1BKN H19 H11 H 0 1 N N N N N N -42.687 -35.106 -3.390 4.731 -2.623 1.792 H19 A1BKN 41 A1BKN H21 H12 H 0 1 N N N N N N -45.128 -34.030 -4.985 4.369 -4.421 0.039 H21 A1BKN 42 A1BKN H20 H13 H 0 1 N N N N N N -43.856 -35.154 -5.572 5.165 -3.345 -1.229 H20 A1BKN 43 A1BKN H23 H14 H 0 1 N N N N N N -42.005 -33.358 -5.000 7.303 -3.317 0.137 H23 A1BKN 44 A1BKN H22 H15 H 0 1 N N N N N N -43.277 -32.234 -4.414 6.507 -4.393 1.405 H22 A1BKN 45 A1BKN H5 H16 H 0 1 N N N N N N -42.475 -26.079 1.270 -1.376 3.250 1.020 H5 A1BKN 46 A1BKN H6 H17 H 0 1 N N N N N N -44.071 -26.090 0.446 -1.073 3.220 -0.748 H6 A1BKN 47 A1BKN H8 H18 H 0 1 N N N N N N -43.746 -26.706 3.147 -3.034 1.953 -0.799 H8 A1BKN 48 A1BKN H7 H19 H 0 1 N N N N N N -45.079 -27.370 2.143 -2.879 1.473 0.914 H7 A1BKN 49 A1BKN H9 H20 H 0 1 N N N N N N -43.448 -29.487 6.034 -3.987 -3.008 -0.768 H9 A1BKN 50 A1BKN H1 H21 H 0 1 N N N N N N -43.683 -30.273 -1.863 2.305 0.575 0.376 H1 A1BKN 51 A1BKN H10 H22 H 0 1 N N N N N N -47.727 -28.672 8.230 -8.554 -1.678 0.317 H10 A1BKN 52 A1BKN H4 H23 H 0 1 N N N N N N -41.158 -27.208 -0.274 0.879 0.716 1.933 H4 A1BKN 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BKN C21 C22 SING N N 1 A1BKN C21 C20 SING N N 2 A1BKN C22 C20 SING N N 3 A1BKN C20 C19 SING N N 4 A1BKN C19 N5 DOUB Y N 5 A1BKN C19 C18 SING Y N 6 A1BKN N5 C15 SING Y N 7 A1BKN C18 C17 DOUB Y N 8 A1BKN N1 C2 SING N N 9 A1BKN N1 C1 SING N N 10 A1BKN O2 C3 SING N N 11 A1BKN C15 C1 SING N N 12 A1BKN C15 C16 DOUB Y N 13 A1BKN C2 C3 SING N N 14 A1BKN C17 C16 SING Y N 15 A1BKN C1 O1 DOUB N N 16 A1BKN C3 C4 SING N N 17 A1BKN C3 C14 SING N N 18 A1BKN C4 C5 SING N N 19 A1BKN C14 N2 SING N N 20 A1BKN C5 N2 SING N N 21 A1BKN N2 C6 SING N N 22 A1BKN C6 O3 DOUB N N 23 A1BKN C6 C7 SING N N 24 A1BKN C13 C7 DOUB Y N 25 A1BKN C13 C12 SING Y N 26 A1BKN C7 C8 SING Y N 27 A1BKN C12 C11 SING Y N 28 A1BKN C12 C9 DOUB Y N 29 A1BKN C11 C10 DOUB Y N 30 A1BKN C8 N3 DOUB Y N 31 A1BKN C9 N3 SING Y N 32 A1BKN C9 N4 SING Y N 33 A1BKN C10 N4 SING Y N 34 A1BKN C14 H15 SING N N 35 A1BKN C14 H14 SING N N 36 A1BKN C17 H17 SING N N 37 A1BKN C10 H11 SING N N 38 A1BKN C11 H12 SING N N 39 A1BKN C13 H13 SING N N 40 A1BKN C16 H16 SING N N 41 A1BKN C18 H18 SING N N 42 A1BKN C2 H2 SING N N 43 A1BKN C2 H3 SING N N 44 A1BKN C20 H19 SING N N 45 A1BKN C21 H21 SING N N 46 A1BKN C21 H20 SING N N 47 A1BKN C22 H23 SING N N 48 A1BKN C22 H22 SING N N 49 A1BKN C4 H5 SING N N 50 A1BKN C4 H6 SING N N 51 A1BKN C5 H8 SING N N 52 A1BKN C5 H7 SING N N 53 A1BKN C8 H9 SING N N 54 A1BKN N1 H1 SING N N 55 A1BKN N4 H10 SING N N 56 A1BKN O2 H4 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BKN SMILES ACDLabs 14.52 "OC1(CNC(=O)c2cccc(n2)C2CC2)CCN(C1)C(=O)c1cc2cc[NH]c2nc1" A1BKN InChI InChI 1.06 "InChI=1S/C22H23N5O3/c28-20(18-3-1-2-17(26-18)14-4-5-14)25-12-22(30)7-9-27(13-22)21(29)16-10-15-6-8-23-19(15)24-11-16/h1-3,6,8,10-11,14,30H,4-5,7,9,12-13H2,(H,23,24)(H,25,28)/t22-/m0/s1" A1BKN InChIKey InChI 1.06 VAZWTOOMLWLRPN-QFIPXVFZSA-N A1BKN SMILES_CANONICAL CACTVS 3.385 "O[C@@]1(CCN(C1)C(=O)c2cnc3[nH]ccc3c2)CNC(=O)c4cccc(n4)C5CC5" A1BKN SMILES CACTVS 3.385 "O[C]1(CCN(C1)C(=O)c2cnc3[nH]ccc3c2)CNC(=O)c4cccc(n4)C5CC5" A1BKN SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(nc(c1)C(=O)NC[C@]2(CCN(C2)C(=O)c3cc4cc[nH]c4nc3)O)C5CC5" A1BKN SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(nc(c1)C(=O)NCC2(CCN(C2)C(=O)c3cc4cc[nH]c4nc3)O)C5CC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BKN "SYSTEMATIC NAME" ACDLabs 14.52 "6-cyclopropyl-N-{[(3S)-3-hydroxy-1-(1H-pyrrolo[2,3-b]pyridine-5-carbonyl)pyrrolidin-3-yl]methyl}pyridine-2-carboxamide" A1BKN "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "6-cyclopropyl-~{N}-[[(3~{S})-3-oxidanyl-1-(1~{H}-pyrrolo[2,3-b]pyridin-5-ylcarbonyl)pyrrolidin-3-yl]methyl]pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BKN "Create component" 2024-12-09 RCSB A1BKN "Initial release" 2025-08-20 RCSB #