data_A1BKV # _chem_comp.id A1BKV _chem_comp.name "N-[(2S)-1-{2-(dichloroacetyl)-2-[(2-oxo-1,2-dihydropyridin-3-yl)methyl]hydrazin-1-yl}-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 Cl2 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-10 _chem_comp.pdbx_modified_date 2025-09-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 536.408 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BKV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MDQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BKV N1 N1 N 0 1 N N N N N N -20.475 25.564 0.264 1.458 -0.151 -0.187 N1 A1BKV 1 A1BKV N3 N2 N 0 1 N N N N N N -20.116 27.873 4.369 -3.253 0.035 0.723 N3 A1BKV 2 A1BKV C4 C1 C 0 1 N N N N N N -19.312 27.823 -1.417 1.043 -0.976 -2.987 C4 A1BKV 3 A1BKV C5 C2 C 0 1 N N N N N N -17.999 28.491 -1.019 0.954 -2.167 -3.944 C5 A1BKV 4 A1BKV C6 C3 C 0 1 N N N N N N -19.847 28.435 -2.676 0.786 0.319 -3.760 C6 A1BKV 5 A1BKV C7 C4 C 0 1 N N N N N N -20.578 27.103 2.159 -0.943 -0.084 0.160 C7 A1BKV 6 A1BKV C8 C5 C 0 1 N N N N N N -19.613 26.977 5.434 -3.465 1.220 1.558 C8 A1BKV 7 A1BKV C10 C6 C 0 1 N N N N N N -21.912 25.754 5.580 -5.826 1.982 1.333 C10 A1BKV 8 A1BKV C13 C7 C 0 1 N N N N N N -20.028 24.948 6.803 -4.186 3.022 -0.060 C13 A1BKV 9 A1BKV C15 C8 C 0 1 N N N N N N -21.079 30.165 3.651 -3.871 -2.239 -0.030 C15 A1BKV 10 A1BKV C17 C9 C 0 1 Y N N N N N -21.560 23.009 -0.961 5.055 0.688 -0.539 C17 A1BKV 11 A1BKV C20 C10 C 0 1 Y N N N N N -22.506 19.442 -1.800 8.163 0.079 1.532 C20 A1BKV 12 A1BKV C21 C11 C 0 1 N N N N N N -23.976 20.714 -3.860 9.484 1.395 -0.424 C21 A1BKV 13 A1BKV C22 C12 C 0 1 Y N N N N N -21.040 21.002 -0.060 5.414 -0.352 1.446 C22 A1BKV 14 A1BKV C24 C13 C 0 1 Y N N N N N -21.774 18.870 -0.755 7.525 -0.601 2.559 C24 A1BKV 15 A1BKV C1 C14 C 0 1 N N N N N N -20.159 24.373 0.794 2.570 0.361 -0.749 C1 A1BKV 16 A1BKV C11 C15 C 0 1 N N N N N N -22.703 24.708 6.055 -6.795 2.803 0.739 C11 A1BKV 17 A1BKV C12 C16 C 0 1 N N N N N N -22.168 23.817 6.907 -6.435 3.687 -0.221 C12 A1BKV 18 A1BKV C14 C17 C 0 1 N N N N N N -20.839 29.058 4.669 -4.045 -1.045 0.874 C14 A1BKV 19 A1BKV C16 C18 C 0 1 Y N N N N N -20.752 23.205 0.135 3.868 0.216 -0.074 C16 A1BKV 20 A1BKV C18 C19 C 0 1 Y N N N N N -21.766 21.624 -1.091 6.054 0.340 0.400 C18 A1BKV 21 A1BKV C19 C20 C 0 1 Y N N N N N -22.508 20.809 -1.973 7.442 0.552 0.454 C19 A1BKV 22 A1BKV C2 C21 C 0 1 N N S N N N -19.987 26.786 0.791 0.164 -0.006 -0.859 C2 A1BKV 23 A1BKV C23 C22 C 0 1 Y N N N N N -21.039 19.629 0.113 6.165 -0.817 2.522 C23 A1BKV 24 A1BKV C3 C23 C 0 1 N N N N N N -20.262 27.898 -0.221 -0.006 -1.129 -1.884 C3 A1BKV 25 A1BKV C9 C24 C 0 1 N N N N N N -20.560 25.875 5.918 -4.526 2.090 0.936 C9 A1BKV 26 A1BKV N2 N3 N 0 1 N N N N N N -19.700 27.481 3.107 -2.228 0.025 -0.232 N2 A1BKV 27 A1BKV O1 O1 O 0 1 N N N N N N -19.421 24.283 1.781 2.501 0.944 -1.815 O1 A1BKV 28 A1BKV O2 O2 O 0 1 N N N N N N -21.769 26.931 2.395 -0.678 -0.244 1.332 O2 A1BKV 29 A1BKV O3 O3 O 0 1 N N N N N N -18.849 24.948 7.157 -3.027 3.126 -0.428 O3 A1BKV 30 A1BKV N4 N4 N 0 1 N N N N N N -20.862 23.946 7.275 -5.141 3.790 -0.619 N4 A1BKV 31 A1BKV N5 N5 N 0 1 Y N N N N N -20.429 21.990 0.666 4.076 -0.422 1.135 N5 A1BKV 32 A1BKV O4 O4 O 0 1 N N N N N N -21.159 29.314 5.831 -4.897 -1.057 1.737 O4 A1BKV 33 A1BKV O5 O5 O 0 1 N N N N N N -23.186 21.493 -2.936 8.071 1.219 -0.548 O5 A1BKV 34 A1BKV H1 H1 H 0 1 N N N N N N -21.078 25.591 -0.533 1.514 -0.619 0.661 H1 A1BKV 35 A1BKV H5 H2 H 0 1 N N N N N N -19.103 26.761 -1.614 2.037 -0.942 -2.541 H5 A1BKV 36 A1BKV H8 H3 H 0 1 N N N N N N -17.296 28.451 -1.864 1.702 -2.058 -4.730 H8 A1BKV 37 A1BKV H7 H4 H 0 1 N N N N N N -18.189 29.541 -0.750 1.137 -3.090 -3.394 H7 A1BKV 38 A1BKV H6 H5 H 0 1 N N N N N N -17.566 27.963 -0.156 -0.040 -2.201 -4.390 H6 A1BKV 39 A1BKV H11 H6 H 0 1 N N N N N N -19.101 28.336 -3.478 -0.208 0.285 -4.206 H11 A1BKV 40 A1BKV H10 H7 H 0 1 N N N N N N -20.773 27.918 -2.970 0.849 1.167 -3.078 H10 A1BKV 41 A1BKV H9 H8 H 0 1 N N N N N N -20.061 29.500 -2.504 1.533 0.428 -4.546 H9 A1BKV 42 A1BKV H14 H9 H 0 1 N N N N N N -18.702 26.490 5.056 -3.786 0.911 2.553 H14 A1BKV 43 A1BKV H13 H10 H 0 1 N N N N N N -19.360 27.603 6.303 -2.533 1.781 1.635 H13 A1BKV 44 A1BKV H15 H11 H 0 1 N N N N N N -22.357 26.494 4.931 -6.106 1.275 2.100 H15 A1BKV 45 A1BKV H29 H14 H 0 1 N N N N N N -21.360 30.134 2.588 -3.542 -1.904 -1.014 H29 A1BKV 46 A1BKV H21 H15 H 0 1 N N N N N N -21.962 23.778 -1.604 5.209 1.226 -1.462 H21 A1BKV 47 A1BKV H22 H16 H 0 1 N N N N N N -23.070 18.812 -2.472 9.230 0.240 1.577 H22 A1BKV 48 A1BKV H25 H17 H 0 1 N N N N N N -24.467 21.385 -4.580 9.701 1.959 0.484 H25 A1BKV 49 A1BKV H24 H18 H 0 1 N N N N N N -23.323 20.013 -4.400 9.968 0.420 -0.371 H24 A1BKV 50 A1BKV H23 H19 H 0 1 N N N N N N -24.740 20.150 -3.304 9.859 1.941 -1.289 H23 A1BKV 51 A1BKV H28 H20 H 0 1 N N N N N N -21.790 17.797 -0.630 8.100 -0.966 3.397 H28 A1BKV 52 A1BKV H16 H21 H 0 1 N N N N N N -23.732 24.615 5.742 -7.828 2.730 1.047 H16 A1BKV 53 A1BKV H17 H22 H 0 1 N N N N N N -22.767 23.007 7.296 -7.186 4.317 -0.675 H17 A1BKV 54 A1BKV H2 H23 H 0 1 N N N N N N -18.896 26.711 0.911 0.124 0.958 -1.367 H2 A1BKV 55 A1BKV H27 H24 H 0 1 N N N N N N -20.474 19.170 0.911 5.680 -1.349 3.328 H27 A1BKV 56 A1BKV H4 H25 H 0 1 N N N N N N -21.297 27.804 -0.582 -1.003 -1.074 -2.321 H4 A1BKV 57 A1BKV H3 H26 H 0 1 N N N N N N -20.134 28.871 0.275 0.122 -2.093 -1.392 H3 A1BKV 58 A1BKV H12 H27 H 0 1 N N N N N N -18.723 27.479 2.895 -2.443 0.096 -1.175 H12 A1BKV 59 A1BKV H18 H28 H 0 1 N N N N N N -20.485 23.282 7.921 -4.900 4.431 -1.305 H18 A1BKV 60 A1BKV H26 H29 H 0 1 N N N N N N -19.839 21.844 1.460 3.392 -0.847 1.675 H26 A1BKV 61 A1BKV CL1 CL1 CL 0 0 N Y N N N N -20.099 31.583 4.400 -2.636 -3.349 0.671 CL1 A1BKV 62 A1BKV CL2 CL2 CL 0 0 N Y N N N N ? ? ? -5.442 -3.109 -0.185 CL2 A1BKV 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BKV O1 C1 DOUB N N 1 A1BKV C1 N1 SING N N 2 A1BKV N1 C2 SING N N 3 A1BKV C2 C3 SING N N 4 A1BKV C3 C4 SING N N 5 A1BKV C4 C5 SING N N 6 A1BKV C4 C6 SING N N 7 A1BKV C2 C7 SING N N 8 A1BKV C7 O2 DOUB N N 9 A1BKV C7 N2 SING N N 10 A1BKV N2 N3 SING N N 11 A1BKV N3 C8 SING N N 12 A1BKV C8 C9 SING N N 13 A1BKV C9 C10 DOUB N N 14 A1BKV C10 C11 SING N N 15 A1BKV C11 C12 DOUB N N 16 A1BKV C9 C13 SING N N 17 A1BKV C13 O3 DOUB N N 18 A1BKV C13 N4 SING N N 19 A1BKV N3 C14 SING N N 20 A1BKV C14 O4 DOUB N N 21 A1BKV C14 C15 SING N N 22 A1BKV C1 C16 SING N N 23 A1BKV C16 C17 DOUB Y N 24 A1BKV C17 C18 SING Y N 25 A1BKV C18 C19 DOUB Y N 26 A1BKV C19 C20 SING Y N 27 A1BKV C19 O5 SING N N 28 A1BKV O5 C21 SING N N 29 A1BKV C16 N5 SING Y N 30 A1BKV N5 C22 SING Y N 31 A1BKV C22 C23 DOUB Y N 32 A1BKV C23 C24 SING Y N 33 A1BKV C12 N4 SING N N 34 A1BKV C18 C22 SING Y N 35 A1BKV C20 C24 DOUB Y N 36 A1BKV N1 H1 SING N N 37 A1BKV C4 H5 SING N N 38 A1BKV C5 H8 SING N N 39 A1BKV C5 H7 SING N N 40 A1BKV C5 H6 SING N N 41 A1BKV C6 H11 SING N N 42 A1BKV C6 H10 SING N N 43 A1BKV C6 H9 SING N N 44 A1BKV C8 H14 SING N N 45 A1BKV C8 H13 SING N N 46 A1BKV C10 H15 SING N N 47 A1BKV C15 H29 SING N N 48 A1BKV C17 H21 SING N N 49 A1BKV C20 H22 SING N N 50 A1BKV C21 H25 SING N N 51 A1BKV C21 H24 SING N N 52 A1BKV C21 H23 SING N N 53 A1BKV C24 H28 SING N N 54 A1BKV C11 H16 SING N N 55 A1BKV C12 H17 SING N N 56 A1BKV C2 H2 SING N N 57 A1BKV C23 H27 SING N N 58 A1BKV C3 H4 SING N N 59 A1BKV C3 H3 SING N N 60 A1BKV N2 H12 SING N N 61 A1BKV N4 H18 SING N N 62 A1BKV N5 H26 SING N N 63 A1BKV C15 CL1 SING N N 64 A1BKV C15 CL2 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BKV SMILES ACDLabs 14.52 "O=C1NC=CC=C1CN(NC(=O)C(CC(C)C)NC(=O)c1cc2c(OC)cccc2[NH]1)C(=O)C(Cl)Cl" A1BKV InChI InChI 1.06 "InChI=1S/C24H27Cl2N5O5/c1-13(2)10-17(29-22(33)18-11-15-16(28-18)7-4-8-19(15)36-3)23(34)30-31(24(35)20(25)26)12-14-6-5-9-27-21(14)32/h4-9,11,13,17,20,28H,10,12H2,1-3H3,(H,27,32)(H,29,33)(H,30,34)/t17-/m0/s1" A1BKV InChIKey InChI 1.06 XAQBZJZQCBKCJV-KRWDZBQOSA-N A1BKV SMILES_CANONICAL CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)NN(CC3=CC=CNC3=O)C(=O)C(Cl)Cl" A1BKV SMILES CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)NN(CC3=CC=CNC3=O)C(=O)C(Cl)Cl" A1BKV SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)C[C@@H](C(=O)NN(CC1=CC=CNC1=O)C(=O)C(Cl)Cl)NC(=O)c2cc3c([nH]2)cccc3OC" A1BKV SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)CC(C(=O)NN(CC1=CC=CNC1=O)C(=O)C(Cl)Cl)NC(=O)c2cc3c([nH]2)cccc3OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BKV "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(2S)-1-{2-(dichloroacetyl)-2-[(2-oxo-1,2-dihydropyridin-3-yl)methyl]hydrazin-1-yl}-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide (non-preferred name)" A1BKV "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(2~{S})-1-[2-[2,2-bis(chloranyl)ethanoyl]-2-[(2-oxidanylidene-1~{H}-pyridin-3-yl)methyl]hydrazinyl]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BKV "Create component" 2024-12-10 RCSB A1BKV "Initial release" 2025-09-24 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BKV _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #