data_A1BLE # _chem_comp.id A1BLE _chem_comp.name "(1S,2R,3S,4S,5S)-5-(hexylamino)-4-(hexyloxy)cyclohexane-1,2,3-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H37 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-15 _chem_comp.pdbx_modified_date 2026-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.491 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BLE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ELC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BLE C21 C21 C 0 1 N N N N N N -43.072 42.093 -2.101 -5.012 -1.123 -0.039 C21 A1BLE 1 A1BLE C23 C23 C 0 1 N N N N N N -43.497 44.537 -2.337 -7.149 -2.415 0.052 C23 A1BLE 2 A1BLE C22 C22 C 0 1 N N N N N N -43.828 43.289 -1.564 -5.623 -2.524 0.041 C22 A1BLE 3 A1BLE C17 C17 C 0 1 N N N N N N -44.376 42.972 -6.662 2.407 -0.312 -0.754 C17 A1BLE 4 A1BLE C19 C19 C 0 1 N N N N N N -44.510 40.744 -3.878 -2.875 0.168 -0.129 C19 A1BLE 5 A1BLE C06 C6 C 0 1 N N S N N N -42.197 41.929 -6.705 0.606 1.267 -0.835 C06 A1BLE 6 A1BLE C02 C2 C 0 1 N N R N N N -39.988 40.457 -6.647 1.372 3.240 0.493 C02 A1BLE 7 A1BLE C03 C3 C 0 1 N N S N N N -40.272 40.050 -5.198 -0.022 3.364 1.113 C03 A1BLE 8 A1BLE C04 C4 C 0 1 N N N N N N -41.114 41.115 -4.438 -0.670 1.981 1.192 C04 A1BLE 9 A1BLE C05 C5 C 0 1 N N S N N N -42.402 41.549 -5.199 -0.788 1.392 -0.215 C05 A1BLE 10 A1BLE C01 C1 C 0 1 N N S N N N -41.286 40.890 -7.421 1.254 2.651 -0.914 C01 A1BLE 11 A1BLE C20 C20 C 0 1 N N N N N N -43.904 40.818 -2.438 -3.486 -1.233 -0.050 C20 A1BLE 12 A1BLE N07 N1 N 0 1 N N N N N N -43.456 40.414 -4.974 -1.410 0.063 -0.140 N07 A1BLE 13 A1BLE O09 O9 O 0 1 N N N N N N -39.079 39.845 -4.486 -0.828 4.222 0.303 O09 A1BLE 14 A1BLE O10 O10 O 0 1 N N N N N N -39.485 39.312 -7.290 2.178 2.382 1.303 O10 A1BLE 15 A1BLE O11 O11 O 0 1 N N N N N N -40.901 41.552 -8.575 0.448 3.509 -1.723 O11 A1BLE 16 A1BLE O12 O12 O 0 1 N N N N N N -43.458 42.097 -7.332 1.412 0.409 -0.025 O12 A1BLE 17 A1BLE H21A H21A H 0 0 N N N N N N -42.322 41.810 -1.348 -5.348 -0.632 -0.952 H21A A1BLE 18 A1BLE H21B H21B H 0 0 N N N N N N -42.563 42.410 -3.023 -5.329 -0.539 0.826 H21B A1BLE 19 A1BLE H23B H23B H 0 0 N N N N N N -44.015 44.740 -3.286 -7.466 -1.831 0.916 H23B A1BLE 20 A1BLE H24A H24A H 0 0 N N N N N N -43.733 44.405 -3.372 -8.847 -3.737 0.139 H24A A1BLE 21 A1BLE H23A H23A H 0 0 N N N N N N -43.335 45.482 -1.798 -7.485 -1.923 -0.862 H23A A1BLE 22 A1BLE H22B H22B H 0 0 N N N N N N -43.558 43.439 -0.508 -5.307 -3.108 -0.824 H22B A1BLE 23 A1BLE H22A H22A H 0 0 N N N N N N -44.908 43.095 -1.642 -5.288 -3.015 0.954 H22A A1BLE 24 A1BLE H16A H16A H 0 0 N N N N N N -45.289 43.025 -7.218 2.533 -1.897 0.700 H16A A1BLE 25 A1BLE H17B H17B H 0 0 N N N N N N -44.202 44.050 -6.531 1.924 -0.938 -1.505 H17B A1BLE 26 A1BLE H17A H17A H 0 0 N N N N N N -45.450 42.758 -6.554 3.079 0.391 -1.246 H17A A1BLE 27 A1BLE H19A H19A H 0 0 N N N N N N -44.967 41.716 -4.115 -3.211 0.659 -1.042 H19A A1BLE 28 A1BLE H19B H19B H 0 0 N N N N N N -45.284 39.962 -3.891 -3.192 0.752 0.735 H19B A1BLE 29 A1BLE H06 H6 H 0 1 N N N N N N -41.663 42.891 -6.722 0.522 0.848 -1.837 H06 A1BLE 30 A1BLE H02 H2 H 0 1 N N N N N N -39.262 41.284 -6.666 1.833 4.226 0.437 H02 A1BLE 31 A1BLE H03 H3 H 0 1 N N N N N N -40.855 39.117 -5.217 0.062 3.784 2.115 H03 A1BLE 32 A1BLE H04 H4 H 0 1 N N N N N N -40.487 42.005 -4.279 -0.055 1.326 1.809 H04 A1BLE 33 A1BLE H04B H4B H 0 0 N Y N N N N -41.409 40.695 -3.465 -1.663 2.069 1.633 H04B A1BLE 34 A1BLE H05 H5 H 0 1 N N N N N N -42.787 42.447 -4.693 -1.403 2.046 -0.833 H05 A1BLE 35 A1BLE H01 H1 H 0 1 N N N N N N -41.878 39.992 -7.651 2.247 2.563 -1.355 H01 A1BLE 36 A1BLE H20A H20A H 0 0 N N N N N N -44.737 40.762 -1.721 -3.151 -1.724 0.863 H20A A1BLE 37 A1BLE H20B H20B H 0 0 N N N N N N -43.248 39.945 -2.306 -3.170 -1.817 -0.914 H20B A1BLE 38 A1BLE H07 H7 H 0 1 N N N N N N -43.937 40.255 -5.836 -1.095 -0.527 -0.895 H07 A1BLE 39 A1BLE H09 H9 H 0 1 N N N N N N -39.282 39.594 -3.593 -0.477 5.119 0.209 H09 A1BLE 40 A1BLE H10 H10 H 0 1 N N N N N N -38.697 39.020 -6.847 2.296 2.694 2.211 H10 A1BLE 41 A1BLE H11 H11 H 0 1 N N N N N N -40.333 40.990 -9.088 0.799 4.405 -1.818 H11 A1BLE 42 A1BLE C24 C24 C 0 1 N N N N N N ? ? ? -7.760 -3.815 0.131 C24 A1BLE 43 A1BLE C16 C16 C 0 1 N N N N N N ? ? ? 3.205 -1.194 0.208 C16 A1BLE 44 A1BLE C15 C15 C 0 1 N N N N N N ? ? ? 4.270 -1.967 -0.573 C15 A1BLE 45 A1BLE C14 C14 C 0 1 N N N N N N ? ? ? 5.069 -2.848 0.389 C14 A1BLE 46 A1BLE C13 C13 C 0 1 N N N N N N ? ? ? 6.134 -3.621 -0.391 C13 A1BLE 47 A1BLE C12 C12 C 0 1 N N N N N N ? ? ? 6.933 -4.502 0.571 C12 A1BLE 48 A1BLE H24B H24B H 0 0 N N N N N N ? ? ? -7.444 -4.399 -0.733 H24B A1BLE 49 A1BLE H24C H24C H 0 0 N N N N N N ? ? ? -7.425 -4.307 1.044 H24C A1BLE 50 A1BLE H16B H16B H 0 0 N N N N N N ? ? ? 3.688 -0.568 0.959 H16B A1BLE 51 A1BLE H15A H15A H 0 0 N N N N N N ? ? ? 3.788 -2.593 -1.323 H15A A1BLE 52 A1BLE H15B H15B H 0 0 N N N N N N ? ? ? 4.942 -1.263 -1.064 H15B A1BLE 53 A1BLE H14B H14B H 0 0 N N N N N N ? ? ? 5.552 -2.222 1.140 H14B A1BLE 54 A1BLE H14A H14A H 0 0 N N N N N N ? ? ? 4.397 -3.551 0.881 H14A A1BLE 55 A1BLE H13A H13A H 0 0 N N N N N N ? ? ? 5.651 -4.247 -1.142 H13A A1BLE 56 A1BLE H13B H13B H 0 0 N N N N N N ? ? ? 6.806 -2.917 -0.883 H13B A1BLE 57 A1BLE H12C H12C H 0 0 N N N N N N ? ? ? 6.261 -5.206 1.062 H12C A1BLE 58 A1BLE H12A H12A H 0 0 N N N N N N ? ? ? 7.691 -5.053 0.014 H12A A1BLE 59 A1BLE H12B H12B H 0 0 N N N N N N ? ? ? 7.415 -3.876 1.321 H12B A1BLE 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BLE O11 C01 SING N N 1 A1BLE C01 C06 SING N N 2 A1BLE C01 C02 SING N N 3 A1BLE O12 C06 SING N N 4 A1BLE O12 C17 SING N N 5 A1BLE O10 C02 SING N N 6 A1BLE C06 C05 SING N N 7 A1BLE C02 C03 SING N N 8 A1BLE C05 N07 SING N N 9 A1BLE C05 C04 SING N N 10 A1BLE C03 O09 SING N N 11 A1BLE C03 C04 SING N N 12 A1BLE N07 C19 SING N N 13 A1BLE C19 C20 SING N N 14 A1BLE C20 C21 SING N N 15 A1BLE C23 C22 SING N N 16 A1BLE C21 C22 SING N N 17 A1BLE C21 H21A SING N N 18 A1BLE C21 H21B SING N N 19 A1BLE C23 H23B SING N N 20 A1BLE C23 H23A SING N N 21 A1BLE C22 H22B SING N N 22 A1BLE C22 H22A SING N N 23 A1BLE C17 H17B SING N N 24 A1BLE C17 H17A SING N N 25 A1BLE C19 H19A SING N N 26 A1BLE C19 H19B SING N N 27 A1BLE C06 H06 SING N N 28 A1BLE C02 H02 SING N N 29 A1BLE C03 H03 SING N N 30 A1BLE C04 H04 SING N N 31 A1BLE C04 H04B SING N N 32 A1BLE C05 H05 SING N N 33 A1BLE C01 H01 SING N N 34 A1BLE C20 H20A SING N N 35 A1BLE C20 H20B SING N N 36 A1BLE N07 H07 SING N N 37 A1BLE O09 H09 SING N N 38 A1BLE O10 H10 SING N N 39 A1BLE O11 H11 SING N N 40 A1BLE C23 C24 SING N N 41 A1BLE C17 C16 SING N N 42 A1BLE C16 C15 SING N N 43 A1BLE C15 C14 SING N N 44 A1BLE C14 C13 SING N N 45 A1BLE C13 C12 SING N N 46 A1BLE C24 H24A SING N N 47 A1BLE C24 H24B SING N N 48 A1BLE C24 H24C SING N N 49 A1BLE C16 H16A SING N N 50 A1BLE C16 H16B SING N N 51 A1BLE C15 H15A SING N N 52 A1BLE C15 H15B SING N N 53 A1BLE C14 H14B SING N N 54 A1BLE C14 H14A SING N N 55 A1BLE C13 H13A SING N N 56 A1BLE C13 H13B SING N N 57 A1BLE C12 H12C SING N N 58 A1BLE C12 H12A SING N N 59 A1BLE C12 H12B SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BLE SMILES ACDLabs 14.52 "OC1CC(NCCCCCC)C(OCCCCCC)C(O)C1O" A1BLE InChI InChI 1.06 "InChI=1S/C18H37NO4/c1-3-5-7-9-11-19-14-13-15(20)16(21)17(22)18(14)23-12-10-8-6-4-2/h14-22H,3-13H2,1-2H3/t14-,15-,16+,17-,18-/m0/s1" A1BLE InChIKey InChI 1.06 YXVZGHDVIUUBBR-JCECYMMASA-N A1BLE SMILES_CANONICAL CACTVS 3.385 "CCCCCCN[C@H]1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1OCCCCCC" A1BLE SMILES CACTVS 3.385 "CCCCCCN[CH]1C[CH](O)[CH](O)[CH](O)[CH]1OCCCCCC" A1BLE SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCCCCN[C@H]1C[C@@H]([C@H]([C@@H]([C@H]1OCCCCCC)O)O)O" A1BLE SMILES "OpenEye OEToolkits" 3.1.0.0 "CCCCCCNC1CC(C(C(C1OCCCCCC)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BLE "SYSTEMATIC NAME" ACDLabs 14.52 "(1S,2R,3S,4S,5S)-5-(hexylamino)-4-(hexyloxy)cyclohexane-1,2,3-triol" A1BLE "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{S},2~{R},3~{S},4~{S},5~{S})-4-hexoxy-5-(hexylamino)cyclohexane-1,2,3-triol" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BLE _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C04 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BLE "Create component" 2024-12-16 RCSB A1BLE "Modify PCM" 2024-12-18 RCSB A1BLE "Initial release" 2026-07-08 RCSB #