data_A1BLM # _chem_comp.id A1BLM _chem_comp.name pemrametostat _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "GSK3326595; 6-[(1-acetylpiperidin-4-yl)amino]-N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]pyrimidine-4-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-16 _chem_comp.pdbx_modified_date 2025-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.549 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BLM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MGL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BLM C1 C1 C 0 1 N N N N N N 31.049 -49.871 -10.430 8.656 1.872 0.682 C1 A1BLM 1 A1BLM C2 C2 C 0 1 N N N N N N 28.643 -50.275 -9.773 7.622 0.518 -1.077 C2 A1BLM 2 A1BLM C3 C3 C 0 1 N N N N N N 27.637 -51.422 -9.875 7.012 -0.864 -0.827 C3 A1BLM 3 A1BLM C4 C4 C 0 1 N N N N N N 27.174 -51.617 -11.306 5.596 -0.699 -0.269 C4 A1BLM 4 A1BLM C5 C5 C 0 1 N N N N N N 28.304 -51.341 -12.286 5.655 0.052 1.063 C5 A1BLM 5 A1BLM C9 C6 C 0 1 Y N N N N N 22.547 -49.972 -11.015 1.414 -1.257 -0.273 C9 A1BLM 6 A1BLM C10 C7 C 0 1 Y N N N N N 23.292 -51.451 -9.473 1.755 -3.502 0.122 C10 A1BLM 7 A1BLM C8 C8 C 0 1 Y N N N N N 23.802 -49.953 -11.627 2.791 -1.057 -0.275 C8 A1BLM 8 A1BLM C7 C9 C 0 1 Y N N N N N 24.768 -50.772 -11.051 3.620 -2.164 -0.068 C7 A1BLM 9 A1BLM C6 C10 C 0 1 N N N N N N 29.649 -51.539 -11.613 6.250 1.445 0.834 C6 A1BLM 10 A1BLM O2 O1 O 0 1 N N N N N N 18.757 -45.410 -10.572 -3.406 -0.681 -1.668 O2 A1BLM 11 A1BLM O1 O2 O 0 1 N N N N N N 21.456 -48.824 -12.781 0.928 0.999 -0.669 O1 A1BLM 12 A1BLM N1 N1 N 0 1 N N N N N N 26.006 -50.808 -11.653 4.997 -2.019 -0.060 N1 A1BLM 13 A1BLM C12 C11 C 0 1 N N N N N N 19.609 -47.616 -11.145 -1.761 0.799 -0.697 C12 A1BLM 14 A1BLM C13 C12 C 0 1 N N S N N N 19.895 -46.282 -10.467 -3.205 0.297 -0.646 C13 A1BLM 15 A1BLM C14 C13 C 0 1 N N N N N N 21.133 -45.569 -10.999 -4.161 1.471 -0.868 C14 A1BLM 16 A1BLM C15 C14 C 0 1 N N N N N N 22.629 -43.707 -10.750 -6.501 2.053 -1.114 C15 A1BLM 17 A1BLM N2 N2 N 0 1 Y N N N N N 22.283 -50.722 -9.945 0.941 -2.487 -0.070 N2 A1BLM 18 A1BLM C16 C15 C 0 1 N N N N N N 22.828 -42.326 -10.161 -7.880 1.413 -1.270 C16 A1BLM 19 A1BLM C17 C16 C 0 1 Y N N N N N 22.875 -42.456 -8.664 -8.218 0.612 -0.039 C17 A1BLM 20 A1BLM C18 C17 C 0 1 Y N N N N N 23.655 -41.592 -7.905 -9.540 0.250 0.172 C18 A1BLM 21 A1BLM N3 N3 N 0 1 Y N N N N N 24.541 -51.529 -9.958 3.066 -3.356 0.122 N3 A1BLM 22 A1BLM C19 C18 C 0 1 Y N N N N N 23.832 -41.809 -6.554 -9.892 -0.486 1.286 C19 A1BLM 23 A1BLM C20 C19 C 0 1 Y N N N N N 23.216 -42.877 -5.942 -8.922 -0.864 2.195 C20 A1BLM 24 A1BLM C22 C20 C 0 1 Y N N N N N 22.223 -43.531 -8.040 -7.250 0.237 0.869 C22 A1BLM 25 A1BLM C23 C21 C 0 1 N N N N N N 21.359 -44.474 -8.853 -5.803 0.611 0.687 C23 A1BLM 26 A1BLM N N4 N 0 1 N N N N N N 29.854 -50.523 -10.578 7.550 1.299 0.165 N A1BLM 27 A1BLM C C22 C 0 1 N N N N N N 31.154 -48.791 -9.375 8.547 2.768 1.888 C A1BLM 28 A1BLM O O3 O 0 1 N N N N N N 32.001 -50.139 -11.153 9.739 1.662 0.178 O A1BLM 29 A1BLM C11 C23 C 0 1 N N N N N N 21.467 -49.113 -11.595 0.487 -0.119 -0.489 C11 A1BLM 30 A1BLM C21 C24 C 0 1 Y N N N N N 22.405 -43.727 -6.674 -7.606 -0.503 1.986 C21 A1BLM 31 A1BLM N4 N5 N 0 1 N N N N N N 20.604 -48.585 -10.725 -0.845 -0.325 -0.485 N4 A1BLM 32 A1BLM N5 N6 N 0 1 N N N N N N 21.361 -44.294 -10.308 -5.547 1.012 -0.700 N5 A1BLM 33 A1BLM H5 H1 H 0 1 N N N N N N 28.936 -50.154 -8.720 8.664 0.409 -1.380 H5 A1BLM 34 A1BLM H4 H2 H 0 1 N N N N N N 28.164 -49.351 -10.129 7.065 1.027 -1.864 H4 A1BLM 35 A1BLM H7 H3 H 0 1 N N N N N N 28.112 -52.349 -9.522 6.972 -1.419 -1.764 H7 A1BLM 36 A1BLM H6 H4 H 0 1 N N N N N N 26.766 -51.193 -9.244 7.625 -1.407 -0.107 H6 A1BLM 37 A1BLM H8 H5 H 0 1 N N N N N N 26.898 -52.676 -11.418 4.991 -0.134 -0.978 H8 A1BLM 38 A1BLM H9 H6 H 0 1 N N N N N N 28.221 -52.031 -13.139 4.649 0.149 1.470 H9 A1BLM 39 A1BLM H10 H7 H 0 1 N N N N N N 28.227 -50.304 -12.644 6.280 -0.500 1.765 H10 A1BLM 40 A1BLM H15 H8 H 0 1 N N N N N N 23.081 -52.049 -8.599 1.338 -4.485 0.284 H15 A1BLM 41 A1BLM H14 H9 H 0 1 N N N N N N 24.010 -49.341 -12.493 3.208 -0.073 -0.433 H14 A1BLM 42 A1BLM H12 H10 H 0 1 N N N N N N 29.681 -52.538 -11.153 5.579 2.030 0.205 H12 A1BLM 43 A1BLM H11 H11 H 0 1 N N N N N N 30.447 -51.457 -12.366 6.383 1.947 1.792 H11 A1BLM 44 A1BLM H19 H12 H 0 1 N N N N N N 18.950 -44.584 -10.145 -3.250 -0.352 -2.564 H19 A1BLM 45 A1BLM H13 H13 H 0 1 N N N N N N 26.334 -49.864 -11.605 5.565 -2.792 0.085 H13 A1BLM 46 A1BLM H17 H14 H 0 1 N N N N N N 19.654 -47.491 -12.237 -1.566 1.247 -1.672 H17 A1BLM 47 A1BLM H18 H15 H 0 1 N N N N N N 18.607 -47.968 -10.857 -1.607 1.545 0.082 H18 A1BLM 48 A1BLM H H16 H 0 1 N N N N N N 20.073 -46.490 -9.402 -3.399 -0.150 0.329 H A1BLM 49 A1BLM H21 H17 H 0 1 N N N N N N 22.009 -46.217 -10.851 -3.947 2.256 -0.142 H21 A1BLM 50 A1BLM H20 H18 H 0 1 N N N N N N 20.999 -45.374 -12.073 -4.028 1.862 -1.877 H20 A1BLM 51 A1BLM H22 H19 H 0 1 N N N N N N 23.456 -44.357 -10.429 -6.186 2.481 -2.066 H22 A1BLM 52 A1BLM H23 H20 H 0 1 N N N N N N 22.626 -43.632 -11.847 -6.544 2.836 -0.357 H23 A1BLM 53 A1BLM H25 H21 H 0 1 N N N N N N 23.773 -41.898 -10.527 -8.628 2.194 -1.411 H25 A1BLM 54 A1BLM H24 H22 H 0 1 N N N N N N 21.992 -41.673 -10.452 -7.878 0.756 -2.140 H24 A1BLM 55 A1BLM H26 H23 H 0 1 N N N N N N 24.127 -40.743 -8.377 -10.297 0.545 -0.539 H26 A1BLM 56 A1BLM H27 H24 H 0 1 N N N N N N 24.454 -41.141 -5.977 -10.922 -0.766 1.446 H27 A1BLM 57 A1BLM H28 H25 H 0 1 N N N N N N 23.366 -43.052 -4.887 -9.193 -1.440 3.068 H28 A1BLM 58 A1BLM H30 H26 H 0 1 N N N N N N 21.701 -45.499 -8.645 -5.558 1.439 1.352 H30 A1BLM 59 A1BLM H31 H27 H 0 1 N N N N N N 20.322 -44.356 -8.506 -5.175 -0.244 0.936 H31 A1BLM 60 A1BLM H1 H28 H 0 1 N N N N N N 32.162 -48.350 -9.400 7.519 2.764 2.252 H1 A1BLM 61 A1BLM H2 H29 H 0 1 N N N N N N 30.407 -48.009 -9.576 9.211 2.404 2.672 H2 A1BLM 62 A1BLM H3 H30 H 0 1 N N N N N N 30.969 -49.229 -8.383 8.831 3.784 1.614 H3 A1BLM 63 A1BLM H29 H31 H 0 1 N N N N N N 21.909 -44.550 -6.181 -6.848 -0.799 2.697 H29 A1BLM 64 A1BLM H16 H32 H 0 1 N N N N N N 20.644 -48.862 -9.765 -1.197 -1.217 -0.341 H16 A1BLM 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BLM C C1 SING N N 1 A1BLM O C1 DOUB N N 2 A1BLM C1 N SING N N 3 A1BLM N C2 SING N N 4 A1BLM C2 C3 SING N N 5 A1BLM C3 C4 SING N N 6 A1BLM C5 C4 SING N N 7 A1BLM C6 C5 SING N N 8 A1BLM N C6 SING N N 9 A1BLM C4 N1 SING N N 10 A1BLM N1 C7 SING N N 11 A1BLM C7 C8 DOUB Y N 12 A1BLM C8 C9 SING Y N 13 A1BLM N2 C9 DOUB Y N 14 A1BLM C10 N2 SING Y N 15 A1BLM N3 C10 DOUB Y N 16 A1BLM C7 N3 SING Y N 17 A1BLM C9 C11 SING N N 18 A1BLM C11 O1 DOUB N N 19 A1BLM N4 C11 SING N N 20 A1BLM C12 N4 SING N N 21 A1BLM C13 C12 SING N N 22 A1BLM O2 C13 SING N N 23 A1BLM C14 C13 SING N N 24 A1BLM N5 C14 SING N N 25 A1BLM N5 C15 SING N N 26 A1BLM C15 C16 SING N N 27 A1BLM C16 C17 SING N N 28 A1BLM C17 C18 DOUB Y N 29 A1BLM C18 C19 SING Y N 30 A1BLM C19 C20 DOUB Y N 31 A1BLM C20 C21 SING Y N 32 A1BLM C21 C22 DOUB Y N 33 A1BLM C17 C22 SING Y N 34 A1BLM C22 C23 SING N N 35 A1BLM C23 N5 SING N N 36 A1BLM C2 H5 SING N N 37 A1BLM C2 H4 SING N N 38 A1BLM C3 H7 SING N N 39 A1BLM C3 H6 SING N N 40 A1BLM C4 H8 SING N N 41 A1BLM C5 H9 SING N N 42 A1BLM C5 H10 SING N N 43 A1BLM C10 H15 SING N N 44 A1BLM C8 H14 SING N N 45 A1BLM C6 H12 SING N N 46 A1BLM C6 H11 SING N N 47 A1BLM O2 H19 SING N N 48 A1BLM N1 H13 SING N N 49 A1BLM C12 H17 SING N N 50 A1BLM C12 H18 SING N N 51 A1BLM C13 H SING N N 52 A1BLM C14 H21 SING N N 53 A1BLM C14 H20 SING N N 54 A1BLM C15 H22 SING N N 55 A1BLM C15 H23 SING N N 56 A1BLM C16 H25 SING N N 57 A1BLM C16 H24 SING N N 58 A1BLM C18 H26 SING N N 59 A1BLM C19 H27 SING N N 60 A1BLM C20 H28 SING N N 61 A1BLM C23 H30 SING N N 62 A1BLM C23 H31 SING N N 63 A1BLM C H1 SING N N 64 A1BLM C H2 SING N N 65 A1BLM C H3 SING N N 66 A1BLM C21 H29 SING N N 67 A1BLM N4 H16 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BLM SMILES ACDLabs 14.52 "CC(=O)N1CCC(CC1)Nc1cc(ncn1)C(=O)NCC(O)CN1Cc2ccccc2CC1" A1BLM InChI InChI 1.06 "InChI=1S/C24H32N6O3/c1-17(31)30-10-7-20(8-11-30)28-23-12-22(26-16-27-23)24(33)25-13-21(32)15-29-9-6-18-4-2-3-5-19(18)14-29/h2-5,12,16,20-21,32H,6-11,13-15H2,1H3,(H,25,33)(H,26,27,28)/t21-/m0/s1" A1BLM InChIKey InChI 1.06 JLCCNYVTIWRPIZ-NRFANRHFSA-N A1BLM SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCC(CC1)Nc2cc(ncn2)C(=O)NC[C@H](O)CN3CCc4ccccc4C3" A1BLM SMILES CACTVS 3.385 "CC(=O)N1CCC(CC1)Nc2cc(ncn2)C(=O)NC[CH](O)CN3CCc4ccccc4C3" A1BLM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(=O)N1CCC(CC1)Nc2cc(ncn2)C(=O)NC[C@@H](CN3CCc4ccccc4C3)O" A1BLM SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(=O)N1CCC(CC1)Nc2cc(ncn2)C(=O)NCC(CN3CCc4ccccc4C3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BLM "SYSTEMATIC NAME" ACDLabs 14.52 "6-[(1-acetylpiperidin-4-yl)amino]-N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]pyrimidine-4-carboxamide" A1BLM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]-6-[(1-ethanoylpiperidin-4-yl)amino]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1BLM GSK3326595 AUTHOR ? 2 A1BLM "6-[(1-acetylpiperidin-4-yl)amino]-N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]pyrimidine-4-carboxamide" PDB "systematic name" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BLM "Create component" 2024-12-16 RCSB A1BLM "Initial release" 2025-03-05 RCSB #