data_A1BLT # _chem_comp.id A1BLT _chem_comp.name "(3S)-3-[(2-amino-5-{[2-methoxy-5-({[(3S)-oxolan-3-yl]amino}methyl)phenyl]methyl}-5H-pyrimido[5,4-b]indol-4-yl)amino]hexan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-16 _chem_comp.pdbx_modified_date 2025-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.650 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BLT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MHW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BLT N1 N1 N 0 1 Y N N N N N 16.127 -29.827 -1.749 -3.679 1.247 1.991 N1 A1BLT 1 A1BLT C7 C1 C 0 1 Y N N N N N 19.325 -34.590 -1.553 0.896 -1.019 -0.239 C7 A1BLT 2 A1BLT C8 C2 C 0 1 Y N N N N N 15.613 -32.217 -1.070 -3.825 -1.182 1.121 C8 A1BLT 3 A1BLT N2 N2 N 0 1 Y N N N N N 18.362 -29.087 -1.279 -2.119 2.595 0.934 N2 A1BLT 4 A1BLT C9 C3 C 0 1 Y N N N N N 20.225 -35.207 -2.414 2.026 -1.633 0.270 C9 A1BLT 5 A1BLT O1 O1 O 0 1 N N N N N N 18.048 -33.924 -7.819 7.064 1.349 1.215 O1 A1BLT 6 A1BLT C1 C4 C 0 1 Y N N N N N 13.789 -33.779 -0.991 -5.002 -3.241 1.478 C1 A1BLT 7 A1BLT C5 C5 C 0 1 Y N N N N N 15.922 -34.410 -0.061 -3.315 -3.119 -0.226 C5 A1BLT 8 A1BLT C6 C6 C 0 1 Y N N N N N 22.009 -34.618 -0.896 1.320 -3.722 -0.663 C6 A1BLT 9 A1BLT N3 N3 N 0 1 Y N N N N N 17.660 -32.608 -0.160 -2.208 -0.844 -0.420 N3 A1BLT 10 A1BLT C4 C7 C 0 1 Y N N N N N 21.568 -35.223 -2.060 2.237 -2.982 0.058 C4 A1BLT 11 A1BLT C3 C8 C 0 1 Y N N N N N 14.294 -32.544 -1.372 -4.786 -1.921 1.809 C3 A1BLT 12 A1BLT O3 O2 O 0 1 N N N N N N 21.425 -33.312 1.082 -0.716 -3.833 -1.888 O3 A1BLT 13 A1BLT C2 C9 C 0 1 Y N N N N N 14.593 -34.701 -0.337 -4.267 -3.836 0.463 C2 A1BLT 14 A1BLT N4 N4 N 0 1 N N N N N N 16.830 -27.707 -2.285 -3.428 3.467 2.664 N4 A1BLT 15 A1BLT C10 C10 C 0 1 Y N N N N N 19.737 -33.968 -0.379 -0.024 -1.754 -0.961 C10 A1BLT 16 A1BLT C11 C11 C 0 1 Y N N N N N 16.437 -31.032 -1.254 -3.356 0.209 1.218 C11 A1BLT 17 A1BLT C12 C12 C 0 1 Y N N N N N 16.401 -33.145 -0.374 -3.081 -1.784 0.093 C12 A1BLT 18 A1BLT C13 C13 C 0 1 Y N N N N N 17.683 -31.312 -0.682 -2.361 0.361 0.246 C13 A1BLT 19 A1BLT C14 C14 C 0 1 Y N N N N N 21.095 -33.981 -0.065 0.188 -3.108 -1.179 C14 A1BLT 20 A1BLT C15 C15 C 0 1 Y N N N N N 18.674 -30.278 -0.732 -1.740 1.611 0.126 C15 A1BLT 21 A1BLT C16 C16 C 0 1 Y N N N N N 17.112 -28.905 -1.760 -3.067 2.409 1.844 C16 A1BLT 22 A1BLT C17 C17 C 0 1 N N N N N N 17.764 -35.701 -6.311 6.739 -1.022 1.046 C17 A1BLT 23 A1BLT C18 C18 C 0 1 N N N N N N 17.042 -34.629 -7.107 7.776 0.117 1.011 C18 A1BLT 24 A1BLT C19 C19 C 0 1 N N N N N N 19.152 -33.806 -6.907 5.714 1.138 0.750 C19 A1BLT 25 A1BLT C20 C20 C 0 1 N N S N N N 19.141 -35.071 -6.040 5.385 -0.297 1.236 C20 A1BLT 26 A1BLT C21 C21 C 0 1 N N N N N N 20.546 -28.566 3.682 3.529 2.314 -1.448 C21 A1BLT 27 A1BLT C22 C22 C 0 1 N N N N N N 22.812 -33.121 1.372 -0.383 -5.194 -2.165 C22 A1BLT 28 A1BLT C23 C23 C 0 1 N N N N N N 18.743 -33.295 0.538 -1.259 -1.086 -1.509 C23 A1BLT 29 A1BLT C24 C24 C 0 1 N N N N N N 19.748 -35.784 -3.728 3.029 -0.828 1.056 C24 A1BLT 30 A1BLT C25 C25 C 0 1 N N N N N N 20.950 -29.340 2.436 2.157 2.381 -0.775 C25 A1BLT 31 A1BLT C26 C26 C 0 1 N N N N N N 20.692 -28.549 1.152 1.159 3.059 -1.716 C26 A1BLT 32 A1BLT C27 C27 C 0 1 N N N N N N 22.323 -29.910 -0.270 -1.159 3.972 -1.906 C27 A1BLT 33 A1BLT C28 C28 C 0 1 N N N N N N 22.534 -30.717 -1.533 -2.453 4.243 -1.136 C28 A1BLT 34 A1BLT C29 C29 C 0 1 N N S N N N 20.904 -29.361 -0.124 -0.203 3.162 -1.027 C29 A1BLT 35 A1BLT N5 N5 N 0 1 N N N N N N 19.919 -30.435 -0.212 -0.749 1.819 -0.821 N5 A1BLT 36 A1BLT N6 N6 N 0 1 N N N N N N 19.340 -34.691 -4.626 4.341 -0.906 0.400 N6 A1BLT 37 A1BLT O2 O3 O 0 1 N N N N N N 23.894 -31.110 -1.659 -3.346 4.999 -1.957 O2 A1BLT 38 A1BLT H1 H1 H 0 1 N N N N N N 18.274 -34.594 -1.803 0.731 0.034 -0.069 H1 A1BLT 39 A1BLT H2 H2 H 0 1 N N N N N N 12.760 -34.025 -1.206 -5.746 -3.814 2.011 H2 A1BLT 40 A1BLT H3 H3 H 0 1 N N N N N N 16.568 -35.150 0.387 -2.748 -3.592 -1.015 H3 A1BLT 41 A1BLT H4 H4 H 0 1 N N N N N N 23.057 -34.641 -0.635 1.487 -4.775 -0.832 H4 A1BLT 42 A1BLT H5 H5 H 0 1 N N N N N N 22.281 -35.716 -2.704 3.121 -3.459 0.456 H5 A1BLT 43 A1BLT H6 H6 H 0 1 N N N N N N 13.667 -31.840 -1.900 -5.359 -1.461 2.600 H6 A1BLT 44 A1BLT H7 H7 H 0 1 N N N N N N 14.181 -35.654 -0.040 -4.444 -4.872 0.212 H7 A1BLT 45 A1BLT H8 H8 H 0 1 N N N N N N 15.881 -27.695 -2.600 -4.119 3.348 3.333 H8 A1BLT 46 A1BLT H9 H9 H 0 1 N N N N N N 16.959 -27.000 -1.590 -2.988 4.327 2.568 H9 A1BLT 47 A1BLT H10 H10 H 0 1 N N N N N N 17.237 -35.916 -5.370 6.747 -1.574 0.106 H10 A1BLT 48 A1BLT H11 H11 H 0 1 N N N N N N 17.862 -36.627 -6.896 6.934 -1.692 1.883 H11 A1BLT 49 A1BLT H12 H12 H 0 1 N N N N N N 16.504 -33.948 -6.431 8.275 0.134 0.042 H12 A1BLT 50 A1BLT H13 H13 H 0 1 N N N N N N 16.329 -35.088 -7.808 8.509 -0.023 1.806 H13 A1BLT 51 A1BLT H14 H14 H 0 1 N N N N N N 20.098 -33.735 -7.464 5.035 1.861 1.202 H14 A1BLT 52 A1BLT H15 H15 H 0 1 N N N N N N 19.030 -32.913 -6.277 5.668 1.195 -0.337 H15 A1BLT 53 A1BLT H16 H16 H 0 1 N N N N N N 19.935 -35.757 -6.371 5.089 -0.294 2.285 H16 A1BLT 54 A1BLT H17 H17 H 0 1 N N N N N N 20.750 -29.175 4.575 3.908 3.324 -1.602 H17 A1BLT 55 A1BLT H18 H18 H 0 1 N N N N N N 21.123 -27.631 3.736 4.219 1.760 -0.812 H18 A1BLT 56 A1BLT H19 H19 H 0 1 N N N N N N 19.472 -28.332 3.636 3.437 1.810 -2.411 H19 A1BLT 57 A1BLT H20 H20 H 0 1 N N N N N N 22.917 -32.571 2.319 0.583 -5.237 -2.668 H20 A1BLT 58 A1BLT H21 H21 H 0 1 N N N N N N 23.306 -34.100 1.460 -0.330 -5.753 -1.230 H21 A1BLT 59 A1BLT H22 H22 H 0 1 N N N N N N 23.280 -32.545 0.560 -1.146 -5.633 -2.807 H22 A1BLT 60 A1BLT H23 H23 H 0 1 N N N N N N 18.301 -34.062 1.192 -1.720 -1.732 -2.256 H23 A1BLT 61 A1BLT H24 H24 H 0 1 N N N N N N 19.282 -32.557 1.151 -0.985 -0.137 -1.970 H24 A1BLT 62 A1BLT H25 H25 H 0 1 N N N N N N 18.890 -36.449 -3.547 2.707 0.212 1.100 H25 A1BLT 63 A1BLT H26 H26 H 0 1 N N N N N N 20.563 -36.356 -4.194 3.104 -1.229 2.067 H26 A1BLT 64 A1BLT H27 H27 H 0 1 N N N N N N 20.372 -30.275 2.398 1.814 1.371 -0.548 H27 A1BLT 65 A1BLT H28 H28 H 0 1 N N N N N N 22.023 -29.574 2.498 2.233 2.955 0.149 H28 A1BLT 66 A1BLT H29 H29 H 0 1 N N N N N N 21.375 -27.687 1.132 1.517 4.058 -1.966 H29 A1BLT 67 A1BLT H30 H30 H 0 1 N N N N N N 19.652 -28.192 1.167 1.062 2.470 -2.628 H30 A1BLT 68 A1BLT H31 H31 H 0 1 N N N N N N 22.537 -30.555 0.595 -1.385 3.409 -2.811 H31 A1BLT 69 A1BLT H32 H32 H 0 1 N N N N N N 23.025 -29.063 -0.278 -0.691 4.919 -2.175 H32 A1BLT 70 A1BLT H33 H33 H 0 1 N N N N N N 22.253 -30.105 -2.403 -2.921 3.296 -0.867 H33 A1BLT 71 A1BLT H34 H34 H 0 1 N N N N N N 21.901 -31.616 -1.497 -2.227 4.806 -0.231 H34 A1BLT 72 A1BLT H35 H35 H 0 1 N N N N N N 20.735 -28.679 -0.971 -0.086 3.659 -0.064 H35 A1BLT 73 A1BLT H36 H36 H 0 1 N N N N N N 19.784 -30.757 0.725 -0.417 1.074 -1.346 H36 A1BLT 74 A1BLT H37 H37 H 0 1 N N N N N N 20.047 -33.985 -4.593 4.315 -0.480 -0.514 H37 A1BLT 75 A1BLT H39 H39 H 0 1 N N N N N N 24.006 -31.614 -2.456 -4.189 5.207 -1.532 H39 A1BLT 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BLT O1 C18 SING N N 1 A1BLT O1 C19 SING N N 2 A1BLT C18 C17 SING N N 3 A1BLT C19 C20 SING N N 4 A1BLT C17 C20 SING N N 5 A1BLT C20 N6 SING N N 6 A1BLT N6 C24 SING N N 7 A1BLT C24 C9 SING N N 8 A1BLT C9 C4 DOUB Y N 9 A1BLT C9 C7 SING Y N 10 A1BLT N4 C16 SING N N 11 A1BLT C4 C6 SING Y N 12 A1BLT C16 N1 DOUB Y N 13 A1BLT C16 N2 SING Y N 14 A1BLT N1 C11 SING Y N 15 A1BLT O2 C28 SING N N 16 A1BLT C7 C10 DOUB Y N 17 A1BLT C28 C27 SING N N 18 A1BLT C3 C8 DOUB Y N 19 A1BLT C3 C1 SING Y N 20 A1BLT N2 C15 DOUB Y N 21 A1BLT C11 C8 SING Y N 22 A1BLT C11 C13 DOUB Y N 23 A1BLT C8 C12 SING Y N 24 A1BLT C1 C2 DOUB Y N 25 A1BLT C6 C14 DOUB Y N 26 A1BLT C15 C13 SING Y N 27 A1BLT C15 N5 SING N N 28 A1BLT C13 N3 SING Y N 29 A1BLT C10 C14 SING Y N 30 A1BLT C10 C23 SING N N 31 A1BLT C12 N3 SING Y N 32 A1BLT C12 C5 DOUB Y N 33 A1BLT C2 C5 SING Y N 34 A1BLT C27 C29 SING N N 35 A1BLT N5 C29 SING N N 36 A1BLT N3 C23 SING N N 37 A1BLT C29 C26 SING N N 38 A1BLT C14 O3 SING N N 39 A1BLT O3 C22 SING N N 40 A1BLT C26 C25 SING N N 41 A1BLT C25 C21 SING N N 42 A1BLT C7 H1 SING N N 43 A1BLT C1 H2 SING N N 44 A1BLT C5 H3 SING N N 45 A1BLT C6 H4 SING N N 46 A1BLT C4 H5 SING N N 47 A1BLT C3 H6 SING N N 48 A1BLT C2 H7 SING N N 49 A1BLT N4 H8 SING N N 50 A1BLT N4 H9 SING N N 51 A1BLT C17 H10 SING N N 52 A1BLT C17 H11 SING N N 53 A1BLT C18 H12 SING N N 54 A1BLT C18 H13 SING N N 55 A1BLT C19 H14 SING N N 56 A1BLT C19 H15 SING N N 57 A1BLT C20 H16 SING N N 58 A1BLT C21 H17 SING N N 59 A1BLT C21 H18 SING N N 60 A1BLT C21 H19 SING N N 61 A1BLT C22 H20 SING N N 62 A1BLT C22 H21 SING N N 63 A1BLT C22 H22 SING N N 64 A1BLT C23 H23 SING N N 65 A1BLT C23 H24 SING N N 66 A1BLT C24 H25 SING N N 67 A1BLT C24 H26 SING N N 68 A1BLT C25 H27 SING N N 69 A1BLT C25 H28 SING N N 70 A1BLT C26 H29 SING N N 71 A1BLT C26 H30 SING N N 72 A1BLT C27 H31 SING N N 73 A1BLT C27 H32 SING N N 74 A1BLT C28 H33 SING N N 75 A1BLT C28 H34 SING N N 76 A1BLT C29 H35 SING N N 77 A1BLT N5 H36 SING N N 78 A1BLT N6 H37 SING N N 79 A1BLT O2 H39 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BLT SMILES ACDLabs 14.52 "CCCC(CCO)Nc1nc(N)nc2c3ccccc3n(Cc3cc(CNC4CCOC4)ccc3OC)c21" A1BLT InChI InChI 1.06 "InChI=1S/C29H38N6O3/c1-3-6-21(11-13-36)32-28-27-26(33-29(30)34-28)23-7-4-5-8-24(23)35(27)17-20-15-19(9-10-25(20)37-2)16-31-22-12-14-38-18-22/h4-5,7-10,15,21-22,31,36H,3,6,11-14,16-18H2,1-2H3,(H3,30,32,33,34)/t21-,22-/m0/s1" A1BLT InChIKey InChI 1.06 IIFCCEWBZBDLAS-VXKWHMMOSA-N A1BLT SMILES_CANONICAL CACTVS 3.385 "CCC[C@@H](CCO)Nc1nc(N)nc2c3ccccc3n(Cc4cc(CN[C@H]5CCOC5)ccc4OC)c12" A1BLT SMILES CACTVS 3.385 "CCC[CH](CCO)Nc1nc(N)nc2c3ccccc3n(Cc4cc(CN[CH]5CCOC5)ccc4OC)c12" A1BLT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC[C@@H](CCO)Nc1c2c(c3ccccc3n2Cc4cc(ccc4OC)CN[C@H]5CCOC5)nc(n1)N" A1BLT SMILES "OpenEye OEToolkits" 3.1.0.0 "CCCC(CCO)Nc1c2c(c3ccccc3n2Cc4cc(ccc4OC)CNC5CCOC5)nc(n1)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BLT "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-3-[(2-amino-5-{[2-methoxy-5-({[(3S)-oxolan-3-yl]amino}methyl)phenyl]methyl}-5H-pyrimido[5,4-b]indol-4-yl)amino]hexan-1-ol" A1BLT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-3-[[2-azanyl-5-[[2-methoxy-5-[[[(3~{S})-oxolan-3-yl]amino]methyl]phenyl]methyl]pyrimido[5,4-b]indol-4-yl]amino]hexan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BLT "Create component" 2024-12-16 RCSB A1BLT "Initial release" 2025-03-05 RCSB #