data_A1BME # _chem_comp.id A1BME _chem_comp.name "6-({(1R)-1-[2-methyl-3-(trifluoromethyl)phenyl]ethyl}amino)-8-(oxan-4-yl)-1,3,4,8-tetrahydropyrido[3,4-c][1,6]naphthyridin-9(2H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 F3 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-19 _chem_comp.pdbx_modified_date 2025-03-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.529 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BME _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MJL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BME N1 N1 N 0 1 N N N N N N 3.486 33.604 -42.085 0.086 2.370 0.286 N1 A1BME 1 A1BME N3 N2 N 0 1 N N N N N N 6.601 31.543 -44.078 2.669 5.354 -0.884 N3 A1BME 2 A1BME C4 C1 C 0 1 N N N N N N 1.777 32.251 -43.115 1.735 0.651 0.146 C4 A1BME 3 A1BME C5 C2 C 0 1 N N N N N N 2.243 33.247 -42.169 0.358 1.083 0.363 C5 A1BME 4 A1BME C6 C3 C 0 1 N N N N N N 2.367 30.700 -44.842 4.053 1.311 -0.356 C6 A1BME 5 A1BME C7 C4 C 0 1 N N N N N N 0.943 30.291 -44.988 4.365 -0.045 -0.283 C7 A1BME 6 A1BME C8 C5 C 0 1 N N N N N N 0.496 31.913 -43.215 2.141 -0.666 0.197 C8 A1BME 7 A1BME C10 C6 C 0 1 N N N N N N 6.871 32.949 -43.737 1.637 5.727 0.098 C10 A1BME 8 A1BME C13 C7 C 0 1 N N N N N N -1.700 29.515 -43.100 4.441 -2.795 -1.304 C13 A1BME 9 A1BME C15 C8 C 0 1 N N N N N N -3.821 31.204 -44.103 5.369 -4.018 1.138 C15 A1BME 10 A1BME C17 C9 C 0 1 N N R N N N 1.589 34.796 -40.303 -2.010 0.620 0.859 C17 A1BME 11 A1BME C20 C10 C 0 1 Y N N N N N 2.133 37.203 -41.023 -4.264 -0.217 0.162 C20 A1BME 12 A1BME C21 C11 C 0 1 Y N N N N N 1.700 38.504 -41.413 -5.137 -1.246 -0.138 C21 A1BME 13 A1BME C22 C12 C 0 1 Y N N N N N 0.319 38.783 -41.505 -4.713 -2.559 -0.056 C22 A1BME 14 A1BME C24 C13 C 0 1 Y N N N N N -0.212 36.506 -40.829 -2.540 -1.815 0.620 C24 A1BME 15 A1BME C26 C14 C 0 1 N N N N N N 2.716 39.604 -41.735 -6.552 -0.936 -0.554 C26 A1BME 16 A1BME C1 C15 C 0 1 N N N N N N 4.487 32.983 -42.865 0.986 3.320 0.023 C1 A1BME 17 A1BME C2 C16 C 0 1 N N N N N N 4.155 32.022 -43.786 2.296 3.038 -0.191 C2 A1BME 18 A1BME C3 C17 C 0 1 N N N N N N 2.747 31.635 -43.937 2.729 1.696 -0.144 C3 A1BME 19 A1BME N2 N3 N 0 1 N N N N N N 0.058 30.939 -44.135 3.432 -0.973 -0.018 N2 A1BME 20 A1BME C9 C18 C 0 1 N N N N N N 5.921 33.414 -42.630 0.476 4.743 -0.030 C9 A1BME 21 A1BME C11 C19 C 0 1 N N N N N N 5.244 31.343 -44.620 3.319 4.106 -0.473 C11 A1BME 22 A1BME C12 C20 C 0 1 N N N N N N -1.380 30.578 -44.159 3.839 -2.379 0.041 C12 A1BME 23 A1BME C14 C21 C 0 1 N N N N N N -3.167 29.082 -43.226 4.935 -4.241 -1.210 C14 A1BME 24 A1BME O1 O1 O 0 1 N N N N N N -4.020 30.214 -43.095 5.889 -4.348 -0.151 O1 A1BME 25 A1BME C16 C22 C 0 1 N N N N N N -2.385 31.741 -44.031 4.892 -2.562 1.138 C16 A1BME 26 A1BME N4 N4 N 0 1 N N N N N N 1.272 33.799 -41.328 -0.634 0.167 0.643 N4 A1BME 27 A1BME C18 C23 C 0 1 Y N N N N N 1.163 36.202 -40.728 -2.964 -0.502 0.538 C18 A1BME 28 A1BME C19 C24 C 0 1 N N N N N N 0.961 34.442 -38.940 -2.187 1.038 2.320 C19 A1BME 29 A1BME C23 C25 C 0 1 Y N N N N N -0.629 37.788 -41.215 -3.415 -2.843 0.325 C23 A1BME 30 A1BME C25 C26 C 0 1 N N N N N N 3.625 36.880 -40.931 -4.726 1.214 0.073 C25 A1BME 31 A1BME O2 O2 O 0 1 N N N N N N 0.563 29.435 -45.791 5.520 -0.399 -0.467 O2 A1BME 32 A1BME F1 F1 F 0 1 N N N N N N 2.113 40.729 -42.122 -6.536 -0.156 -1.715 F1 A1BME 33 A1BME F2 F2 F 0 1 N N N N N N 3.441 39.907 -40.658 -7.237 -2.129 -0.803 F2 A1BME 34 A1BME F3 F3 F 0 1 N N N N N N 3.534 39.239 -42.724 -7.196 -0.233 0.471 F3 A1BME 35 A1BME H32 H1 H 0 1 N N N N N N 6.701 30.988 -43.252 3.346 6.094 -0.996 H32 A1BME 36 A1BME HC6 H3 H 0 1 N N N N N N 3.115 30.241 -45.472 4.816 2.044 -0.571 HC6 A1BME 37 A1BME HC8 H5 H 0 1 N N N N N N -0.228 32.397 -42.576 1.425 -1.447 0.408 HC8 A1BME 38 A1BME H102 H7 H 0 0 N N N N N N 7.910 33.046 -43.389 2.052 5.677 1.104 H102 A1BME 39 A1BME H101 H8 H 0 0 N N N N N N 6.723 33.575 -44.630 1.285 6.738 -0.105 H101 A1BME 40 A1BME H131 H9 H 0 0 N N N N N N -1.047 28.642 -43.250 3.681 -2.720 -2.082 H131 A1BME 41 A1BME H132 H10 H 0 0 N N N N N N -1.528 29.934 -42.098 5.277 -2.140 -1.548 H132 A1BME 42 A1BME H152 H11 H 0 0 N N N N N N -4.528 32.032 -43.946 4.531 -4.675 1.372 H152 A1BME 43 A1BME H151 H12 H 0 0 N N N N N N -3.994 30.757 -45.093 6.150 -4.145 1.888 H151 A1BME 44 A1BME HC17 H13 H 0 0 N N N N N N 2.680 34.811 -40.165 -2.218 1.471 0.210 HC17 A1BME 45 A1BME HC22 H14 H 0 0 N N N N N N -0.011 39.768 -41.800 -5.396 -3.362 -0.290 HC22 A1BME 46 A1BME HC24 H15 H 0 0 N N N N N N -0.947 35.746 -40.608 -1.525 -2.037 0.914 HC24 A1BME 47 A1BME H92 H16 H 0 1 N N N N N N 6.263 32.991 -41.674 -0.226 4.905 0.789 H92 A1BME 48 A1BME H91 H17 H 0 1 N N N N N N 5.953 34.512 -42.578 -0.035 4.909 -0.978 H91 A1BME 49 A1BME H112 H18 H 0 0 N N N N N N 5.211 31.754 -45.640 3.981 3.767 -1.270 H112 A1BME 50 A1BME H111 H19 H 0 0 N N N N N N 5.037 30.263 -44.653 3.906 4.287 0.427 H111 A1BME 51 A1BME HC12 H20 H 0 0 N N N N N N -1.575 30.110 -45.135 2.971 -3.000 0.260 HC12 A1BME 52 A1BME H141 H21 H 0 0 N N N N N N -3.327 28.617 -44.210 4.091 -4.901 -1.007 H141 A1BME 53 A1BME H142 H22 H 0 0 N N N N N N -3.402 28.355 -42.435 5.403 -4.528 -2.151 H142 A1BME 54 A1BME H161 H23 H 0 0 N N N N N N -2.234 32.249 -43.067 4.455 -2.322 2.107 H161 A1BME 55 A1BME H162 H24 H 0 0 N N N N N N -2.222 32.456 -44.851 5.738 -1.902 0.945 H162 A1BME 56 A1BME HN4 H25 H 0 1 N N N N N N 0.323 33.501 -41.430 -0.420 -0.778 0.698 HN4 A1BME 57 A1BME H192 H26 H 0 0 N N N N N N 1.224 35.215 -38.203 -1.978 0.187 2.969 H192 A1BME 58 A1BME H191 H27 H 0 0 N N N N N N -0.133 34.390 -39.043 -1.496 1.849 2.552 H191 A1BME 59 A1BME H193 H28 H 0 0 N N N N N N 1.344 33.468 -38.602 -3.211 1.375 2.481 H193 A1BME 60 A1BME HC23 H29 H 0 0 N N N N N N -1.683 38.011 -41.290 -3.084 -3.869 0.390 HC23 A1BME 61 A1BME H251 H30 H 0 0 N N N N N N 3.986 37.098 -39.915 -4.545 1.593 -0.933 H251 A1BME 62 A1BME H253 H31 H 0 0 N N N N N N 3.784 35.815 -41.156 -5.792 1.266 0.294 H253 A1BME 63 A1BME H252 H32 H 0 0 N N N N N N 4.179 37.495 -41.656 -4.175 1.820 0.793 H252 A1BME 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BME O2 C7 DOUB N N 1 A1BME C7 C6 SING N N 2 A1BME C7 N2 SING N N 3 A1BME C6 C3 DOUB N N 4 A1BME C11 N3 SING N N 5 A1BME C11 C2 SING N N 6 A1BME C12 N2 SING N N 7 A1BME C12 C16 SING N N 8 A1BME C12 C13 SING N N 9 A1BME N2 C8 SING N N 10 A1BME C15 C16 SING N N 11 A1BME C15 O1 SING N N 12 A1BME N3 C10 SING N N 13 A1BME C3 C2 SING N N 14 A1BME C3 C4 SING N N 15 A1BME C2 C1 DOUB N N 16 A1BME C10 C9 SING N N 17 A1BME C14 C13 SING N N 18 A1BME C14 O1 SING N N 19 A1BME C8 C4 DOUB N N 20 A1BME C4 C5 SING N N 21 A1BME C1 C9 SING N N 22 A1BME C1 N1 SING N N 23 A1BME F3 C26 SING N N 24 A1BME C5 N1 DOUB N N 25 A1BME C5 N4 SING N N 26 A1BME F1 C26 SING N N 27 A1BME C26 C21 SING N N 28 A1BME C26 F2 SING N N 29 A1BME C22 C21 DOUB Y N 30 A1BME C22 C23 SING Y N 31 A1BME C21 C20 SING Y N 32 A1BME N4 C17 SING N N 33 A1BME C23 C24 DOUB Y N 34 A1BME C20 C25 SING N N 35 A1BME C20 C18 DOUB Y N 36 A1BME C24 C18 SING Y N 37 A1BME C18 C17 SING N N 38 A1BME C17 C19 SING N N 39 A1BME N3 H32 SING N N 40 A1BME C6 HC6 SING N N 41 A1BME C8 HC8 SING N N 42 A1BME C10 H102 SING N N 43 A1BME C10 H101 SING N N 44 A1BME C13 H131 SING N N 45 A1BME C13 H132 SING N N 46 A1BME C15 H152 SING N N 47 A1BME C15 H151 SING N N 48 A1BME C17 HC17 SING N N 49 A1BME C22 HC22 SING N N 50 A1BME C24 HC24 SING N N 51 A1BME C9 H92 SING N N 52 A1BME C9 H91 SING N N 53 A1BME C11 H112 SING N N 54 A1BME C11 H111 SING N N 55 A1BME C12 HC12 SING N N 56 A1BME C14 H141 SING N N 57 A1BME C14 H142 SING N N 58 A1BME C16 H161 SING N N 59 A1BME C16 H162 SING N N 60 A1BME N4 HN4 SING N N 61 A1BME C19 H192 SING N N 62 A1BME C19 H191 SING N N 63 A1BME C19 H193 SING N N 64 A1BME C23 HC23 SING N N 65 A1BME C25 H251 SING N N 66 A1BME C25 H253 SING N N 67 A1BME C25 H252 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BME SMILES ACDLabs 14.52 "FC(F)(F)c1cccc(c1C)C(C)NC1=NC=2CCNCC=2C2=CC(=O)N(C=C12)C1CCOCC1" A1BME InChI InChI 1.06 "InChI=1S/C26H29F3N4O2/c1-15-18(4-3-5-22(15)26(27,28)29)16(2)31-25-21-14-33(17-7-10-35-11-8-17)24(34)12-19(21)20-13-30-9-6-23(20)32-25/h3-5,12,14,16-17,30H,6-11,13H2,1-2H3,(H,31,32)/t16-/m1/s1" A1BME InChIKey InChI 1.06 ALSMRGTYWDRDTI-MRXNPFEDSA-N A1BME SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC1=NC2=C(CNCC2)C3=CC(=O)N(C=C13)C4CCOCC4)c5cccc(c5C)C(F)(F)F" A1BME SMILES CACTVS 3.385 "C[CH](NC1=NC2=C(CNCC2)C3=CC(=O)N(C=C13)C4CCOCC4)c5cccc(c5C)C(F)(F)F" A1BME SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(cccc1C(F)(F)F)[C@@H](C)NC2=NC3=C(CNCC3)C4=CC(=O)N(C=C42)C5CCOCC5" A1BME SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(cccc1C(F)(F)F)C(C)NC2=NC3=C(CNCC3)C4=CC(=O)N(C=C42)C5CCOCC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BME "SYSTEMATIC NAME" ACDLabs 14.52 "6-({(1R)-1-[2-methyl-3-(trifluoromethyl)phenyl]ethyl}amino)-8-(oxan-4-yl)-1,3,4,8-tetrahydropyrido[3,4-c][1,6]naphthyridin-9(2H)-one" A1BME "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "6-[[(1~{R})-1-[2-methyl-3-(trifluoromethyl)phenyl]ethyl]amino]-8-(oxan-4-yl)-1,2,3,4-tetrahydropyrido[4,3-c][2,7]naphthyridin-9-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BME "Create component" 2024-12-19 RCSB A1BME "Initial release" 2025-04-02 RCSB #