data_A1BML # _chem_comp.id A1BML _chem_comp.name "2-(piperazin-1-yl)-4-(trifluoromethyl)pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 F3 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-23 _chem_comp.pdbx_modified_date 2025-08-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.206 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BML _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HQY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BML N1 N1 N 0 1 Y N N N N N -2.646 -29.861 49.605 -0.501 1.854 0.131 N1 A1BML 1 A1BML N3 N2 N 0 1 N N N N N N -0.776 -29.457 50.908 -1.826 -0.004 -0.370 N3 A1BML 2 A1BML C4 C1 C 0 1 Y N N N N N -3.962 -30.084 49.561 0.671 2.425 0.353 C4 A1BML 3 A1BML C5 C2 C 0 1 Y N N N N N -2.139 -29.581 50.824 -0.584 0.560 -0.142 C5 A1BML 4 A1BML C6 C3 C 0 1 N N N N N N 0.101 -29.977 49.852 -2.891 1.003 -0.259 C6 A1BML 5 A1BML C7 C4 C 0 1 N N N N N N 1.365 -29.141 49.734 -4.237 0.358 -0.595 C7 A1BML 6 A1BML C8 C5 C 0 1 N N N N N N 1.356 -29.550 52.141 -3.417 -1.773 0.210 C8 A1BML 7 A1BML C1 C6 C 0 1 N N N N N N -4.922 -29.616 53.161 2.921 -0.576 -0.061 C1 A1BML 8 A1BML C2 C7 C 0 1 Y N N N N N -4.167 -29.719 51.870 1.699 0.303 0.009 C2 A1BML 9 A1BML C3 C8 C 0 1 Y N N N N N -4.764 -30.023 50.667 1.821 1.653 0.298 C3 A1BML 10 A1BML C9 C9 C 0 1 N N N N N N -0.096 -29.103 52.162 -2.070 -1.127 0.546 C9 A1BML 11 A1BML F1 F1 F 0 1 N N N N N N -4.671 -30.625 53.990 4.018 0.184 -0.482 F1 A1BML 12 A1BML F2 F2 F 0 1 N N N N N N -6.240 -29.616 52.961 3.183 -1.112 1.204 F2 A1BML 13 A1BML F3 F3 F 0 1 N N N N N N -4.644 -28.499 53.836 2.697 -1.615 -0.971 F3 A1BML 14 A1BML N2 N3 N 0 1 Y N N N N N -2.839 -29.560 51.986 0.496 -0.206 -0.203 N2 A1BML 15 A1BML N4 N4 N 0 1 N N N N N N 2.094 -29.001 51.000 -4.481 -0.766 0.321 N4 A1BML 16 A1BML H2 H1 H 0 1 N N N N N N -4.413 -30.323 48.609 0.732 3.480 0.575 H2 A1BML 17 A1BML H3 H2 H 0 1 N N N N N N 0.377 -31.015 50.092 -2.918 1.393 0.759 H3 A1BML 18 A1BML H4 H3 H 0 1 N N N N N N -0.437 -29.953 48.893 -2.694 1.818 -0.956 H4 A1BML 19 A1BML H5 H4 H 0 1 N N N N N N 2.031 -29.618 49.000 -5.032 1.096 -0.485 H5 A1BML 20 A1BML H6 H5 H 0 1 N N N N N N 1.087 -28.138 49.379 -4.219 -0.008 -1.622 H6 A1BML 21 A1BML H9 H6 H 0 1 N N N N N N 1.387 -30.648 52.086 -3.390 -2.162 -0.808 H9 A1BML 22 A1BML H8 H7 H 0 1 N N N N N N 1.842 -29.216 53.070 -3.613 -2.588 0.906 H8 A1BML 23 A1BML H1 H8 H 0 1 N N N N N N -5.826 -30.206 50.599 2.791 2.093 0.475 H1 A1BML 24 A1BML H10 H9 H 0 1 N N N N N N -0.611 -29.594 53.001 -1.276 -1.865 0.436 H10 A1BML 25 A1BML H11 H10 H 0 1 N N N N N N -0.134 -28.012 52.296 -2.089 -0.762 1.572 H11 A1BML 26 A1BML H7 H11 H 0 1 N N N N N N 2.967 -29.483 50.922 -4.576 -0.443 1.272 H7 A1BML 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BML F1 C1 SING N N 1 A1BML C1 F2 SING N N 2 A1BML C1 F3 SING N N 3 A1BML C1 C2 SING N N 4 A1BML C2 C3 DOUB Y N 5 A1BML C3 C4 SING Y N 6 A1BML C4 N1 DOUB Y N 7 A1BML N1 C5 SING Y N 8 A1BML C5 N2 DOUB Y N 9 A1BML C5 N3 SING N N 10 A1BML N3 C6 SING N N 11 A1BML C6 C7 SING N N 12 A1BML C7 N4 SING N N 13 A1BML N4 C8 SING N N 14 A1BML C8 C9 SING N N 15 A1BML C2 N2 SING Y N 16 A1BML N3 C9 SING N N 17 A1BML C4 H2 SING N N 18 A1BML C6 H3 SING N N 19 A1BML C6 H4 SING N N 20 A1BML C7 H5 SING N N 21 A1BML C7 H6 SING N N 22 A1BML C8 H9 SING N N 23 A1BML C8 H8 SING N N 24 A1BML C3 H1 SING N N 25 A1BML C9 H10 SING N N 26 A1BML C9 H11 SING N N 27 A1BML N4 H7 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BML SMILES ACDLabs 14.52 "FC(F)(F)c1nc(ncc1)N1CCNCC1" A1BML InChI InChI 1.06 "InChI=1S/C9H11F3N4/c10-9(11,12)7-1-2-14-8(15-7)16-5-3-13-4-6-16/h1-2,13H,3-6H2" A1BML InChIKey InChI 1.06 WBJVPAABGFBMJQ-UHFFFAOYSA-N A1BML SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccnc(n1)N2CCNCC2" A1BML SMILES CACTVS 3.385 "FC(F)(F)c1ccnc(n1)N2CCNCC2" A1BML SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cnc(nc1C(F)(F)F)N2CCNCC2" A1BML SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cnc(nc1C(F)(F)F)N2CCNCC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BML "SYSTEMATIC NAME" ACDLabs 14.52 "2-(piperazin-1-yl)-4-(trifluoromethyl)pyrimidine" A1BML "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-piperazin-1-yl-4-(trifluoromethyl)pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BML "Create component" 2024-12-23 RCSB A1BML "Initial release" 2025-08-13 RCSB #