data_A1BMV # _chem_comp.id A1BMV _chem_comp.name "[(2R)-2-methylpiperidin-1-yl](pyrazin-2-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-23 _chem_comp.pdbx_modified_date 2025-08-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 205.256 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BMV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HT6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BMV N1 N1 N 0 1 N N N N N N 27.157 7.667 39.533 1.034 -0.087 -0.379 N1 A1BMV 1 A1BMV N3 N2 N 0 1 Y N N N N N 24.266 9.173 40.080 -1.668 0.849 -0.612 N3 A1BMV 2 A1BMV C4 C1 C 0 1 N N N N N N 28.396 7.617 37.194 3.166 1.614 0.373 C4 A1BMV 3 A1BMV C5 C2 C 0 1 N N N N N N 29.292 7.187 38.358 1.711 2.078 0.522 C5 A1BMV 4 A1BMV C6 C3 C 0 1 N N N N N N 28.555 7.239 39.692 0.843 1.363 -0.519 C6 A1BMV 5 A1BMV C7 C4 C 0 1 N N N N N N 26.662 8.726 40.186 -0.024 -0.906 -0.219 C7 A1BMV 6 A1BMV C8 C5 C 0 1 Y N N N N N 25.283 8.632 40.763 -1.386 -0.340 -0.086 C8 A1BMV 7 A1BMV C10 C6 C 0 1 Y N N N N N 22.871 8.537 41.879 -3.864 0.640 0.182 C10 A1BMV 8 A1BMV C1 C7 C 0 1 N N N N N N 25.919 5.561 39.062 2.370 -2.122 -0.100 C1 A1BMV 9 A1BMV C11 C8 C 0 1 Y N N N N N 23.061 9.109 40.641 -2.881 1.350 -0.492 C11 A1BMV 10 A1BMV C2 C9 C 0 1 N N R N N N 26.344 6.926 38.537 2.400 -0.627 -0.422 C2 A1BMV 11 A1BMV C3 C10 C 0 1 N N N N N N 27.087 6.817 37.205 3.253 0.106 0.618 C3 A1BMV 12 A1BMV C9 C11 C 0 1 Y N N N N N 25.085 8.076 42.016 -2.376 -1.051 0.590 C9 A1BMV 13 A1BMV N2 N3 N 0 1 Y N N N N N 23.880 8.035 42.588 -3.589 -0.541 0.706 N2 A1BMV 14 A1BMV O1 O1 O 0 1 N N N N N N 27.335 9.733 40.374 0.140 -2.110 -0.184 O1 A1BMV 15 A1BMV H8 H1 H 0 1 N N N N N N 28.923 7.438 36.245 3.516 1.834 -0.635 H8 A1BMV 16 A1BMV H7 H2 H 0 1 N N N N N N 28.167 8.689 37.289 3.790 2.138 1.097 H7 A1BMV 17 A1BMV H10 H3 H 0 1 N N N N N N 29.635 6.157 38.181 1.352 1.836 1.523 H10 A1BMV 18 A1BMV H9 H4 H 0 1 N N N N N N 30.161 7.860 38.405 1.655 3.155 0.366 H9 A1BMV 19 A1BMV H12 H5 H 0 1 N N N N N N 28.570 6.237 40.145 1.142 1.676 -1.520 H12 A1BMV 20 A1BMV H11 H6 H 0 1 N N N N N N 29.071 7.949 40.355 -0.205 1.612 -0.354 H11 A1BMV 21 A1BMV H14 H7 H 0 1 N N N N N N 21.872 8.494 42.288 -4.857 1.054 0.279 H14 A1BMV 22 A1BMV H1 H8 H 0 1 N N N N N N 25.390 5.684 40.018 1.801 -2.286 0.816 H1 A1BMV 23 A1BMV H2 H9 H 0 1 N N N N N N 25.251 5.080 38.333 1.899 -2.662 -0.921 H2 A1BMV 24 A1BMV H3 H10 H 0 1 N N N N N N 26.809 4.933 39.214 3.389 -2.485 0.036 H3 A1BMV 25 A1BMV H15 H11 H 0 1 N N N N N N 22.211 9.516 40.112 -3.111 2.315 -0.918 H15 A1BMV 26 A1BMV H4 H12 H 0 1 N N N N N N 25.428 7.506 38.353 2.822 -0.476 -1.415 H4 A1BMV 27 A1BMV H5 H13 H 0 1 N N N N N N 27.319 5.758 37.016 4.290 -0.218 0.531 H5 A1BMV 28 A1BMV H6 H14 H 0 1 N N N N N N 26.435 7.197 36.405 2.883 -0.122 1.618 H6 A1BMV 29 A1BMV H13 H15 H 0 1 N N N N N N 25.931 7.663 42.546 -2.151 -2.017 1.018 H13 A1BMV 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BMV C1 C2 SING N N 1 A1BMV C2 C3 SING N N 2 A1BMV C3 C4 SING N N 3 A1BMV C4 C5 SING N N 4 A1BMV C5 C6 SING N N 5 A1BMV C6 N1 SING N N 6 A1BMV N1 C7 SING N N 7 A1BMV C7 O1 DOUB N N 8 A1BMV C7 C8 SING N N 9 A1BMV C8 C9 DOUB Y N 10 A1BMV C9 N2 SING Y N 11 A1BMV N2 C10 DOUB Y N 12 A1BMV C10 C11 SING Y N 13 A1BMV C11 N3 DOUB Y N 14 A1BMV C2 N1 SING N N 15 A1BMV C8 N3 SING Y N 16 A1BMV C4 H8 SING N N 17 A1BMV C4 H7 SING N N 18 A1BMV C5 H10 SING N N 19 A1BMV C5 H9 SING N N 20 A1BMV C6 H12 SING N N 21 A1BMV C6 H11 SING N N 22 A1BMV C10 H14 SING N N 23 A1BMV C1 H1 SING N N 24 A1BMV C1 H2 SING N N 25 A1BMV C1 H3 SING N N 26 A1BMV C11 H15 SING N N 27 A1BMV C2 H4 SING N N 28 A1BMV C3 H5 SING N N 29 A1BMV C3 H6 SING N N 30 A1BMV C9 H13 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BMV SMILES ACDLabs 14.52 "CC1CCCCN1C(=O)c1cnccn1" A1BMV InChI InChI 1.06 "InChI=1S/C11H15N3O/c1-9-4-2-3-7-14(9)11(15)10-8-12-5-6-13-10/h5-6,8-9H,2-4,7H2,1H3/t9-/m1/s1" A1BMV InChIKey InChI 1.06 MICBEIYHPVLFTJ-SECBINFHSA-N A1BMV SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CCCCN1C(=O)c2cnccn2" A1BMV SMILES CACTVS 3.385 "C[CH]1CCCCN1C(=O)c2cnccn2" A1BMV SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H]1CCCCN1C(=O)c2cnccn2" A1BMV SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCCCN1C(=O)c2cnccn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BMV "SYSTEMATIC NAME" ACDLabs 14.52 "[(2R)-2-methylpiperidin-1-yl](pyrazin-2-yl)methanone" A1BMV "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(2~{R})-2-methylpiperidin-1-yl]-pyrazin-2-yl-methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BMV "Create component" 2024-12-23 RCSB A1BMV "Initial release" 2025-08-13 RCSB #