data_A1BN0 # _chem_comp.id A1BN0 _chem_comp.name "(3S)-N~1~-(1-methyl-1H-1,3-benzimidazol-4-yl)piperidine-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H19 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-10 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BN0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HYZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BN0 N1 N1 N 0 1 Y N N N N N 27.740 12.150 7.349 2.415 1.762 0.034 N1 A1BN0 1 A1BN0 N3 N2 N 0 1 N N N N N N 25.351 14.129 10.618 -1.934 -1.140 -0.291 N3 A1BN0 2 A1BN0 C4 C1 C 0 1 N N N N N N 25.956 12.957 10.272 -0.619 -1.366 -0.104 C4 A1BN0 3 A1BN0 C5 C2 C 0 1 N N N N N N 24.235 14.737 9.868 -2.907 -2.233 -0.166 C5 A1BN0 4 A1BN0 C6 C3 C 0 1 N N N N N N 22.897 14.501 10.559 -3.990 -1.817 0.835 C6 A1BN0 5 A1BN0 C7 C4 C 0 1 N N N N N N 22.972 14.917 12.028 -4.598 -0.482 0.398 C7 A1BN0 6 A1BN0 C8 C5 C 0 1 N N S N N N 24.124 14.191 12.734 -3.511 0.595 0.387 C8 A1BN0 7 A1BN0 C10 C6 C 0 1 N N N N N N 25.437 14.524 12.025 -2.423 0.207 -0.619 C10 A1BN0 8 A1BN0 C13 C7 C 0 1 Y N N N N N 27.057 8.658 7.878 4.372 -1.179 -0.034 C13 A1BN0 9 A1BN0 O1 O1 O 0 1 N N N N N N 24.694 15.721 14.489 -5.301 1.989 -0.264 O1 A1BN0 10 A1BN0 C9 C8 C 0 1 N N N N N N 24.242 14.615 14.187 -4.117 1.916 -0.013 C9 A1BN0 11 A1BN0 N4 N3 N 0 1 N N N N N N 23.875 13.712 15.084 -3.342 3.016 -0.091 N4 A1BN0 12 A1BN0 O O2 O 0 1 N N N N N N 26.899 12.491 10.899 -0.237 -2.460 0.264 O A1BN0 13 A1BN0 N2 N4 N 0 1 N N N N N N 25.436 12.318 9.213 0.273 -0.379 -0.323 N2 A1BN0 14 A1BN0 C3 C9 C 0 1 Y N N N N N 25.964 11.091 8.804 1.643 -0.641 -0.226 C3 A1BN0 15 A1BN0 C11 C10 C 0 1 Y N N N N N 25.462 9.860 9.238 2.109 -1.941 -0.290 C11 A1BN0 16 A1BN0 C12 C11 C 0 1 Y N N N N N 26.009 8.665 8.788 3.467 -2.206 -0.195 C12 A1BN0 17 A1BN0 C14 C12 C 0 1 Y N N N N N 27.538 9.880 7.442 3.925 0.135 0.033 C14 A1BN0 18 A1BN0 N N5 N 0 1 Y N N N N N 28.525 10.211 6.542 4.553 1.355 0.185 N A1BN0 19 A1BN0 C C13 C 0 1 N N N N N N 29.207 9.290 5.643 5.994 1.579 0.327 C A1BN0 20 A1BN0 C2 C14 C 0 1 Y N N N N N 27.041 11.088 7.906 2.553 0.415 -0.063 C2 A1BN0 21 A1BN0 C1 C15 C 0 1 Y N N N N N 28.608 11.568 6.556 3.585 2.312 0.179 C1 A1BN0 22 A1BN0 H6 H1 H 0 1 N N N N N N 24.408 15.820 9.787 -3.363 -2.430 -1.136 H6 A1BN0 23 A1BN0 H7 H2 H 0 1 N N N N N N 24.199 14.295 8.861 -2.404 -3.131 0.193 H7 A1BN0 24 A1BN0 H8 H3 H 0 1 N N N N N N 22.120 15.093 10.054 -4.769 -2.579 0.866 H8 A1BN0 25 A1BN0 H9 H4 H 0 1 N N N N N N 22.642 13.433 10.498 -3.548 -1.709 1.825 H9 A1BN0 26 A1BN0 H10 H5 H 0 1 N N N N N N 23.137 16.003 12.089 -5.018 -0.585 -0.602 H10 A1BN0 27 A1BN0 H11 H6 H 0 1 N N N N N N 22.025 14.662 12.525 -5.385 -0.197 1.095 H11 A1BN0 28 A1BN0 H H7 H 0 1 N N N N N N 23.951 13.106 12.684 -3.074 0.681 1.381 H A1BN0 29 A1BN0 H14 H8 H 0 1 N N N N N N 25.624 15.606 12.090 -1.600 0.919 -0.561 H14 A1BN0 30 A1BN0 H15 H9 H 0 1 N N N N N N 26.262 13.980 12.508 -2.839 0.209 -1.627 H15 A1BN0 31 A1BN0 H18 H10 H 0 1 N N N N N N 27.482 7.731 7.523 5.427 -1.395 0.041 H18 A1BN0 32 A1BN0 H12 H11 H 0 1 N N N N N N 23.959 13.914 16.060 -2.395 2.958 0.109 H12 A1BN0 33 A1BN0 H13 H12 H 0 1 N N N N N N 23.514 12.829 14.785 -3.732 3.866 -0.348 H13 A1BN0 34 A1BN0 H5 H13 H 0 1 N N N N N N 24.668 12.721 8.715 -0.036 0.513 -0.548 H5 A1BN0 35 A1BN0 H16 H14 H 0 1 N N N N N N 24.636 9.838 9.934 1.411 -2.755 -0.416 H16 A1BN0 36 A1BN0 H17 H15 H 0 1 N N N N N N 25.613 7.728 9.151 3.818 -3.226 -0.246 H17 A1BN0 37 A1BN0 H3 H16 H 0 1 N N N N N N 28.926 8.256 5.894 6.264 1.551 1.383 H3 A1BN0 38 A1BN0 H1 H17 H 0 1 N N N N N N 28.915 9.507 4.605 6.537 0.799 -0.207 H1 A1BN0 39 A1BN0 H2 H18 H 0 1 N N N N N N 30.295 9.411 5.751 6.253 2.552 -0.089 H2 A1BN0 40 A1BN0 H4 H19 H 0 1 N N N N N N 29.326 12.119 5.966 3.762 3.373 0.280 H4 A1BN0 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BN0 C N SING N N 1 A1BN0 N C1 SING Y N 2 A1BN0 C1 N1 DOUB Y N 3 A1BN0 N1 C2 SING Y N 4 A1BN0 C2 C3 DOUB Y N 5 A1BN0 C3 N2 SING N N 6 A1BN0 N2 C4 SING N N 7 A1BN0 O C4 DOUB N N 8 A1BN0 C4 N3 SING N N 9 A1BN0 N3 C5 SING N N 10 A1BN0 C5 C6 SING N N 11 A1BN0 C6 C7 SING N N 12 A1BN0 C7 C8 SING N N 13 A1BN0 C8 C9 SING N N 14 A1BN0 N4 C9 SING N N 15 A1BN0 C9 O1 DOUB N N 16 A1BN0 C10 C8 SING N N 17 A1BN0 N3 C10 SING N N 18 A1BN0 C11 C3 SING Y N 19 A1BN0 C12 C11 DOUB Y N 20 A1BN0 C13 C12 SING Y N 21 A1BN0 C14 C13 DOUB Y N 22 A1BN0 C2 C14 SING Y N 23 A1BN0 N C14 SING Y N 24 A1BN0 C5 H6 SING N N 25 A1BN0 C5 H7 SING N N 26 A1BN0 C6 H8 SING N N 27 A1BN0 C6 H9 SING N N 28 A1BN0 C7 H10 SING N N 29 A1BN0 C7 H11 SING N N 30 A1BN0 C8 H SING N N 31 A1BN0 C10 H14 SING N N 32 A1BN0 C10 H15 SING N N 33 A1BN0 C13 H18 SING N N 34 A1BN0 N4 H12 SING N N 35 A1BN0 N4 H13 SING N N 36 A1BN0 N2 H5 SING N N 37 A1BN0 C11 H16 SING N N 38 A1BN0 C12 H17 SING N N 39 A1BN0 C H3 SING N N 40 A1BN0 C H1 SING N N 41 A1BN0 C H2 SING N N 42 A1BN0 C1 H4 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BN0 SMILES ACDLabs 14.52 "O=C(Nc1cccc2n(C)cnc21)N1CCCC(C1)C(N)=O" A1BN0 InChI InChI 1.06 "InChI=1S/C15H19N5O2/c1-19-9-17-13-11(5-2-6-12(13)19)18-15(22)20-7-3-4-10(8-20)14(16)21/h2,5-6,9-10H,3-4,7-8H2,1H3,(H2,16,21)(H,18,22)/t10-/m0/s1" A1BN0 InChIKey InChI 1.06 NNNNPICOGNGKIS-JTQLQIEISA-N A1BN0 SMILES_CANONICAL CACTVS 3.385 "Cn1cnc2c(NC(=O)N3CCC[C@@H](C3)C(N)=O)cccc12" A1BN0 SMILES CACTVS 3.385 "Cn1cnc2c(NC(=O)N3CCC[CH](C3)C(N)=O)cccc12" A1BN0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cn1cnc2c1cccc2NC(=O)N3CCC[C@@H](C3)C(=O)N" A1BN0 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cn1cnc2c1cccc2NC(=O)N3CCCC(C3)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BN0 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-N~1~-(1-methyl-1H-1,3-benzimidazol-4-yl)piperidine-1,3-dicarboxamide" A1BN0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-~{N}1-(1-methylbenzimidazol-4-yl)piperidine-1,3-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BN0 "Create component" 2025-01-10 RCSB A1BN0 "Initial release" 2025-02-26 RCSB #